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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056868 ID=TCONS_00056868|Name=TCONS_00056868|organism=Clytia hemisphaerica|type=transcript|length=1160bp
AACATTTTCAACAACTTCAAATGAGAACGGAGAAGCACCATCAACTGCTG
TCTCCTCCACTGAGtgtattttgaaatgtaaaacTACTGATTCTTCAACG
ACAGCTTATTTTGTTGAAGAAGTATCGAAATGTTTTTGTCTTGTGAATGA
AACTCAAGATATATTTTCCAATGATATCACGATCAATGGGACGCTGTATA
AGCCAGAACCTAAAATGACATCATGCGGGCAAGTCAAGGACAGATCTCGT
TTCTCAACAAACCCTGAAACAGGTTTCTACACACTTGACAAAGACAATGT
ACCAACTGACGTATTCTGTGATTTCACAAACCAAGGGAAACCTTCTTGTA
AACatctgaaagaattttgtcCAACTTGTGCATCAGGATTTTACactttt
gaaatcgaaaatgaattGAATAAGGTTTATTGTGAAATGGATGTCGATGG
AGGTGGCTGGTTGATGTTTGGAAACTTGGAAATCATCCCAGATGCAACAT
CTTTAGACTCTGCTAACGATGCTGTTCAAAACCCATCATCTATATCTGAA
CTTCAAAATGTGCAATCGGGATCTTTCTACTTGGCACCCACAGAACTCCA
AAAGCTTTACAAATCTTCTGGATACAGTGAAATGCGTATTATGTGTTACA
AAAAATGGCATATGCGGACCCTAGATGTCGTTTTGACTGGCCTCAAATTC
GTTGACTGGATGGTTAGTGGTTTCAAGAAAACTGGATTGTGTGGTGATGT
GCGATTTCTACCAATGGATGATTCATTCACATCTGTTCAAGCTTGTTCTG
GATTGAAATTCGGTGGAATTCATCTTATTTATGAGCCGAACCGATACCAC
GTGGTCCTGGGATATCATGGCACGAAANCcatttttgcccccccccccca
gttgctacggcactgtctAGTGATCGTACCTTGGAAAAACTTATAATCTC
AATTCGCAGAACGCAGTGTTCAACAATAAAAAGTtcattactgcagtgac
gtacaaaatatactaaaaatacgaatcctatgaaataggctaatatTTTA
GGCTATGGTCGCGACCCGTAAACAATTAATCAAGTTGGTCTCGCATAAAG
AGAAACGTGAAATTAATCTAAAGTATATTTAACTATTTAATACCACATGC
ACACATTTTG Run BLAST on NCBI protein sequence of TCONS_00056868-protein >TCONS_00056868-protein ID=TCONS_00056868-protein|Name=TCONS_00056868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
TFSTTSNENGEAPSTAVSSTECILKCKTTDSSTTAYFVEEVSKCFCLVNE
TQDIFSNDITINGTLYKPEPKMTSCGQVKDRSRFSTNPETGFYTLDKDNV
PTDVFCDFTNQGKPSCKHLKEFCPTCASGFYTFEIENELNKVYCEMDVDG
GGWLMFGNLEIIPDATSLDSANDAVQNPSSISELQNVQSGSFYLAPTELQ
KLYKSSGYSEMRIMCYKKWHMRTLDVVLTGLKFVDWMVSGFKKTGLCGDV
RFLPMDDSFTSVQACSGLKFGGIHLIYEPNRYHVVLGYHGTKXIFAPPPQ
LLRHCLVIVPWKNL Run BLAST on NCBI transcript from alignment at scaffold_284:682383..686576+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056868 ID=TCONS_00056868|Name=TCONS_00056868|organism=Clytia hemisphaerica|type=transcript|length=4194bp|location=Sequence derived from alignment at scaffold_284:682383..686576+ (Clytia hemisphaerica)
AACATTTTCAACAACTTCAAATGAGAACGGAGAAGCACCATCAACTGCTG
TCTCCTCCACTGAGtgtattttgaaatgtaaaacTACTGATTCTTCAACG
ACAGCTTATTTTGTTGAAGAAGTATCGAAATGTTTTTGTCTTGTGAATGA
AACTCAAGATATATTTTCCAATGATATCACGATCAATGGGACGCTGTATA
AGCCAGAACCTGTAAGTAAGACGAAAATTATTCACCTATCAACCTTGAAA
GTGCGAggagactgggttcgagttttaggccatgttcagacgttatggtt
ccgttccgttccgaagcaagtgtgaacgtcaaaattcgaaacgtcaaaaa
agaagacgttacaaagcaaaacggtttcgctccacttttttcatcggaac
ggaactgctctgTTTTCTTTCTCCGAAACATTCCAAAACCAATATGAGCA
CACTCGATTTGTAACGAGAATCATACCGGAGCAAAAcagaacagtaacgt
gtgaactaGCCTATCTAtatcccaacacgcgatttttttatcaccggaac
ggtgtcgaggaaaaagccgtggtcgtctggcGTCAAAATGTCTGAAGTCG
TTGCACTAAGACAATGTTCAGatgttactgttccgtttcgctccggtttg
attttttgttacggatcgagagtgttcatattggtttcgaaacgtttcgg
aacaagaaaacggagcagttccgatgaaaaaagtggagcaaaTATGTCTC
CAtttattttgctttgtaacgtcttcttttttgacgttttgaatttttga
tgcTAACAGTCTTATGGCTCCCGAAAcagagacggcccccaaaacggagg
tcgtcattaaaatgaggattctaaCCCGTAGATTTATCAGACGTCTAATT
ctgatttttgcttattttgaaagaatgatgattatacttaaaaatgagca
tgtttttgatggtttgagacggattcaaaataacatatttgtgtctgaag
gaaatatttaaacaccaaaattagataaaaattgcatatacctcattcta
gctccttggatagtgaaaataagttatgaaaatggggtataggaaacttt
ctacacctaatgcaaaaacggcaaattccgtcatttttttacaaaatgta
ggagaaaaatacctttaaagcttattattttcagtttcagttaagctgtt
tttctaaaaatttcatAGCAtcttccatacatgaatggaactattttcaa
aagaaatttgattaaaatgttgttaaatcaaaattctcatttcgaaaatt
tctaaattttcagtttggatcatctttgcatcatcgaaaatcttgaaata
ttttataaaagtcataaattttacatccttCGGCTtataaatttaaggga
aaatataaatatgttcatagtttctccccctattaccactgggcttgata
atttgattttaactacacctacgtNaaaacacaaatatgttcatagtttc
tccccctattaccactgggcttgataatttgattttaactacacctacgt
tttgggggccccaagcctccgttttgacaaccaggaaGTATActctaaaa
attttatcaaacaaactaatgcccaaaaccctctaaatcatatttcaaaa
ctatggtcaaaattttgtattcatatcttaaagatatctcaagaaatcgc
taaaattgcaaacctccgttttgggagCCATtaaaaaaagctacctatct
ttaagcgaatgaaaaatattgctgaaattgaaaattttgaaaaaaaactt
atgggaaataaagtagagatgttaaagtttttcatggagcaaaaattttt
gtaaaacgtctttttcttttgatttgagagaaattttaaattcgatcgac
gttttgggggccacatactgtacacTTGTTTATTCGGAcccgtttcgttt
cggagcaaAATGGAACCGTGACGTCTGAACGTCGATGGTCTGAACATGAC
CTAATTCTCAAAGACAACGAATGTTGACGTCATTACGTAACGTGTACCTT
TGAAAGCTCTCCCACACAGTTAGCGCAGTTTTTAGTTCGTCAGAACATAA
TTATTTTTACTCTCATTGATTATTTGATAAAGAAAACTTAGCCTGTGGAT
CTCAgggttaaaaaattgtttttcgtaCGTATCAAAATAAAAGGCTTGAA
GTTGCTTTTCTGACCAAGTTTTTTTGCGAGCAAGTGAACCAAAAACAACG
TCTGCGTTAGTTTTGTTGCTTAGATTAGTCATCAgacaaaatttccattt
tttatttGTAATGGAACGATATAACTGTTCTTTCTTTAGAAAATGACATC
ATGCGGGCAAGTCAAGGACAGATCTCGTTTCTCAACAAACCCTGAAACAG
GTTTCTACACACTTGACAAAGACAATGTACCAACTGACGTATTCTGTGAT
TTCACAAACCAAGGGAAACCTTCTTGTAAACatctgaaagaattttgtcC
AACTTGTGCATCAGGATTTTACacttttgaaatcgaaaatgaattGAATA
AGGTTTATTGTGAAATGGATGTCGATGGAGGTATGAAGCATATGCATTCT
TATCTTTTAAGCTAAAACACAACGTTGTTGCAAAATTTGTCACACATTCC
CTTAACTCTTTCTAGACGTGTGGGCCAATATTctgagtttttttcttttt
tcaaaaagtgaaattttctctCCCGCGAAGGGTTAATATTGCAATAGATC
AGCCACTCTTCCAACCTCGTTCCCATGTATCTCagactttatttacgtta
ctggtACGCATAGGCCTTTTCAAAAGGTATGTTCCCAAGTTATTATTTTC
AAGATGCTACCTTGGGATTTTCCAGGTATTTTGAGGGTAACCTTTCGGAA
CGGAAAGATTTGGGAGAACAACGGCTggctttcttgtttttttttgtcca
TTGAAGTGCTCAAAAGATCATCCATTTACAGGTTACATTTTTCATTCCCC
CTCTGCGAGGTTTGGCCTCACACAAAAATAAGATGAAAAGTCAAATCAAT
CAAGTCAACTCCTTTATGTACGTTTTGGAAGCAAGGTAGATTGTATCACA
GACCTGTCGCAGGCAAGTGATATcttcacccctgtatcacagacccgctg
aaaccccagccccactggaaaatttggaaacaaTTTCGTCCCGGTTGGGA
GagtaccctggaatttcagccccactaggaAATAGACTTTGATTTCATAC
CCATTCGAAATTCCCTGCTCAAaaactgcactccaaaaccatgctcactg
gatttttcaacaatataatttctatccccattggaattacactaggaatt
tttatcccactaaggaaaaaaagttccaccggggctgtgagacagggtat
CTATAGCGAATACGAATTCAGCTTAGGTTGAAAACTTTATACACAGTAAA
GTAATATCATCATCCATTATTTCGATACTCTTCAAGGTGGCTGGTTGATG
TTTGGAAACTTGGAAATCATCCCAGATGCAACATCTTTAGACTCTGCTAA
CGATGCTGTTCAAAACCCATCATCTATATCTGAACTTCAAAATGTGCAAT
CGGGATCTTTCTACTTGGCACCCACAGAACTCCAAAAGCTTTACAAATCT
TCTGGATACAGTGAAATGCGTATTATGTGTTACAAAAAATGGCATATGCG
GACCCTAGATGTCGTTTTGACTGGCCTCAAATTCGTTGACTGGATGGTTA
GTGGTTTCAAGAAAACTGGATTGTGTGGTGATGTGCGATTTCTACCAATG
GATGATTCATTCACATCTGTTCAAGCTTGTTCTGGATTGAAATTCGGTGG
AATTCATCTTATTTATGAGCCGAACCGATACCACGTGGTCCTGGGATATC
ATGGCACGAAANCcatttttgccccccccccccagttgctacggcactgt
ctAGTGATCGTACCTTGGAAAAACTTATAATCTCAATTCGCAGAACGCAG
TGTTCAACAATAAAAAGTtcattactgcagtgacgtacaaaatatactaa
aaatacgaatcctatgaaataggctaatatTTTAGGCTATGGTCGCGACC
CGTAAACAATTAATCAAGTTGGTCTCGCATAAAGAGAAACGTGAAATTAA
TCTAAAGTATATTTAACTATTTAATACCACATGCACACATTTTG Coding sequence (CDS) from alignment at scaffold_284:682383..686576+ >TCONS_00056868 ID=TCONS_00056868|Name=TCONS_00056868|organism=Clytia hemisphaerica|type=CDS|length=2835bp|location=Sequence derived from alignment at scaffold_284:682383..686576+ (Clytia hemisphaerica)
ACATTTTCAACAACTTCAAATGAGAACGGAGAAGCACCATCAACTGCTGT
CTCCTCCACTGAGtgtattttgaaatgtaaaacTACTGATTCTTCAACGA
CAGCTTATTTTGTTGAAGAAGTATCGAAATGTTTTTGTCTTGTGAATGAA
ACTCAAGATATATTTTCCAATGATATCACGATCAATGGGACGCTGTATAA
GCCAGAACCTAAAATGACATCATGCGGGCAAGTCAAGGACAGATCTCGTT
TCTCAACAAACCCTGAAACAGGTTTCTACACACTTGACAAAGACAATGTA
CCAACTGACGTATTCTGTGATTTCACAAACCAAGGGAAACCTTCTTGTAA
ACatctgaaagaattttgtcCAACTTGTGCATCAGGATTTTACacttttg
aaatcgaaaatgaattGAATAAGGTTTATTGTGAAATGGATGTCGATGGA
GGTGGCTGGTTGATGTTTGGAAACTTGGAAATCATCCCAGATGCAACATC
TTTAGACTCTGCTAACGATGCTGTTCAAAACCCATCATCTATATCTGAAC
TTCAAAATGTGCAATCGGGATCTTTCTACTTGGCACCCACAGAACTCCAA
AAGCTTTACAAATCTTCTGGATACAGTGAAATGCGTATTATGTGTTACAA
AAAATGGCATATGCGGACCCTAGATGTCGTTTTGACTGGCCTCAAATTCG
TTGACTGGATGGTTAGTGGTTTCAAGAAAACTGGATTGTGTGGTGATGTG
CGATTTCTACCAATGGATGATTCATTCACATCTGTTCAAGCTTGTTCTGG
ATTGAAATTCGGTGGAATTCATCTTATTTATGAGCCGAACCGATACCACG
TGGTCCTGGGATATCATGGCACGAAANCcatttttgccccccccccccag
ttgctacggcactgtctAGTGATCGTACCTTGGAAAAACTTATAAACATT
TTCAACAACTTCAAATGAGAACGGAGAAGCACCATCAACTGCTGTCTCCT
CCACTGAGtgtattttgaaatgtaaaacTACTGATTCTTCAACGACAGCT
TATTTTGTTGAAGAAGTATCGAAATGTTTTTGTCTTGTGAATGAAACTCA
AGATATATTTTCCAATGATATCACGATCAATGGGACGCTGTATAAGCCAG
AACCTAAAATGACATCATGCGGGCAAGTCAAGGACAGATCTCGTTTCTCA
ACAAACCCTGAAACAGGTTTCTACACACTTGACAAAGACAATGTACCAAC
TGACGTATTCTGTGATTTCACAAACCAAGGGAAACCTTCTTGTAAACatc
tgaaagaattttgtcCAACTTGTGCATCAGGATTTTACacttttgaaatc
gaaaatgaattGAATAAGGTTTATTGTGAAATGGATGTCGATGGAGGTGG
CTGGTTGATGTTTGGAAACTTGGAAATCATCCCAGATGCAACATCTTTAG
ACTCTGCTAACGATGCTGTTCAAAACCCATCATCTATATCTGAACTTCAA
AATGTGCAATCGGGATCTTTCTACTTGGCACCCACAGAACTCCAAAAGCT
TTACAAATCTTCTGGATACAGTGAAATGCGTATTATGTGTTACAAAAAAT
GGCATATGCGGACCCTAGATGTCGTTTTGACTGGCCTCAAATTCGTTGAC
TGGATGGTTAGTGGTTTCAAGAAAACTGGATTGTGTGGTGATGTGCGATT
TCTACCAATGGATGATTCATTCACATCTGTTCAAGCTTGTTCTGGATTGA
AATTCGGTGGAATTCATCTTATTTATGAGCCGAACCGATACCACGTGGTC
CTGGGATATCATGGCACGAAANCcatttttgccccccccccccagttgct
acggcactgtctAGTGATCGTACCTTGGAAAAACTTATAAACATTTTCAA
CAACTTCAAATGAGAACGGAGAAGCACCATCAACTGCTGTCTCCTCCACT
GAGtgtattttgaaatgtaaaacTACTGATTCTTCAACGACAGCTTATTT
TGTTGAAGAAGTATCGAAATGTTTTTGTCTTGTGAATGAAACTCAAGATA
TATTTTCCAATGATATCACGATCAATGGGACGCTGTATAAGCCAGAACCT
AAAATGACATCATGCGGGCAAGTCAAGGACAGATCTCGTTTCTCAACAAA
CCCTGAAACAGGTTTCTACACACTTGACAAAGACAATGTACCAACTGACG
TATTCTGTGATTTCACAAACCAAGGGAAACCTTCTTGTAAACatctgaaa
gaattttgtcCAACTTGTGCATCAGGATTTTACacttttgaaatcgaaaa
tgaattGAATAAGGTTTATTGTGAAATGGATGTCGATGGAGGTGGCTGGT
TGATGTTTGGAAACTTGGAAATCATCCCAGATGCAACATCTTTAGACTCT
GCTAACGATGCTGTTCAAAACCCATCATCTATATCTGAACTTCAAAATGT
GCAATCGGGATCTTTCTACTTGGCACCCACAGAACTCCAAAAGCTTTACA
AATCTTCTGGATACAGTGAAATGCGTATTATGTGTTACAAAAAATGGCAT
ATGCGGACCCTAGATGTCGTTTTGACTGGCCTCAAATTCGTTGACTGGAT
GGTTAGTGGTTTCAAGAAAACTGGATTGTGTGGTGATGTGCGATTTCTAC
CAATGGATGATTCATTCACATCTGTTCAAGCTTGTTCTGGATTGAAATTC
GGTGGAATTCATCTTATTTATGAGCCGAACCGATACCACGTGGTCCTGGG
ATATCATGGCACGAAANCcatttttgccccccccccccagttgctacggc
actgtctAGTGATCGTACCTTGGAAAAACTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056868-exon-scaffold_284-1491911889:682383..682593 | TCONS_00056868-exon-scaffold_284-1491911889:682383..682593 | Clytia hemisphaerica | exon |
| TCONS_00056868-exon-scaffold_284-1510915933:682383..682593 | TCONS_00056868-exon-scaffold_284-1510915933:682383..682593 | Clytia hemisphaerica | exon |
| TCONS_00056868-exon-scaffold_284-1575043694:682383..682593 | TCONS_00056868-exon-scaffold_284-1575043694:682383..682593 | Clytia hemisphaerica | exon |
| TCONS_00056868-exon-scaffold_284-1491911889:684722..684962 | TCONS_00056868-exon-scaffold_284-1491911889:684722..684962 | Clytia hemisphaerica | exon |
| TCONS_00056868-exon-scaffold_284-1510915933:684722..684962 | TCONS_00056868-exon-scaffold_284-1510915933:684722..684962 | Clytia hemisphaerica | exon |
| TCONS_00056868-exon-scaffold_284-1575043694:684722..684962 | TCONS_00056868-exon-scaffold_284-1575043694:684722..684962 | Clytia hemisphaerica | exon |
| TCONS_00056868-exon-scaffold_284-1491911889:685869..686576 | TCONS_00056868-exon-scaffold_284-1491911889:685869..686576 | Clytia hemisphaerica | exon |
| TCONS_00056868-exon-scaffold_284-1510915933:685869..686576 | TCONS_00056868-exon-scaffold_284-1510915933:685869..686576 | Clytia hemisphaerica | exon |
| TCONS_00056868-exon-scaffold_284-1575043694:685869..686576 | TCONS_00056868-exon-scaffold_284-1575043694:685869..686576 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:682383..686576 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014716 | Fibrinogen_a/b/g_C_1 |
| IPR002181 | Fibrinogen_a/b/g_C_dom |
Blast
The following BLAST results are available for this feature:
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