|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056871 ID=TCONS_00056871|Name=TCONS_00056871|organism=Clytia hemisphaerica|type=transcript|length=536bp
TTGCTGCAATCTTTTCCCTGGTGATGGTACACCTACAAATAACCATGGAA
GAGAACCCATGGTAATCGTTGGAGAAAAAGaacttgaaattcaaaagaac
CAGCTTTTAAATATTATACCGATTCTAAGTACGGAATGGATATTGACGTT
ATCCGTACGTTTATACGCAAAAGAAACAACGTGGTGTAACATAATACATT
TAACGCAGAACGGTAAAGATGTCGATTACGGGGACCGTACGCCGTTTCTC
GCTAAACGCTCATCGCCGTCAGAATTCCGTATATCTTCTGCTGTTAACGG
ACAAACCAGTCATAATTTTGACATACCAGGAGACGTTGTCGTTAATCAAA
CTTATTATTTTGAAATCCATCAACGTTATATTAGTAATGGGTCCTACAGA
TACTCTTTGGAGCTTGACGGCGTTGAACAATATTCCATTCTAAACAATGA
CGCAAGACAATTTTATGATGTGAAAGTAATGGCAAGCAACAATTGGCAGA
CGAAATGCCCTGGTCTTATTAGTAACtttaaaatta Run BLAST on NCBI protein sequence of TCONS_00056871-protein >TCONS_00056871-protein ID=TCONS_00056871-protein|Name=TCONS_00056871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
CCNLFPGDGTPTNNHGREPMVIVGEKELEIQKNQLLNIIPILSTEWILTL
SVRLYAKETTWCNIIHLTQNGKDVDYGDRTPFLAKRSSPSEFRISSAVNG
QTSHNFDIPGDVVVNQTYYFEIHQRYISNGSYRYSLELDGVEQYSILNND
ARQFYDVKVMASNNWQTKCPGLISNFKI Run BLAST on NCBI transcript from alignment at scaffold_284:731185..732801+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056871 ID=TCONS_00056871|Name=TCONS_00056871|organism=Clytia hemisphaerica|type=transcript|length=1617bp|location=Sequence derived from alignment at scaffold_284:731185..732801+ (Clytia hemisphaerica)
TTGCTGCAATCTTTTCCCTGGTGATGGTACACCTACAAATAACCATGGAA
GAGAACCCATGGTAATCGTTGGAGAAAAAGGTAAATTACCCGGGGTTACG
AGGATGGCAAGCTGAAGGATATGTGCCGCCCTATTTTTGACCCTCCAACT
ATTAGCCGGAACAAATAAAAAGAGGAGAAAATACAGGAATATTTTCCGAC
ACTAAAGCTACCTATGATTCAGACAAAAGTTAACGTTCTTTACCAAAGTT
CTTTTCACAGTATAATaacaatacactcttctcgagatgcataaatttat
tgttgtcctcgttttcaaacagatttcattgctatgaagttatacattta
aaccaatttaaattcccaaaaggcaaacattaactctaaaacaaaagtat
ttgaaattcaaaatgcctcatgaggtgtaaacaacacaattattaTTGTG
ATTATGTAATTTTacagcaatgaaatctgtttgaaaacgagggcaacaat
aaatttatgcatctcgagaagagtgtattgtcAGTAAATTAAGTTTCAAA
CTAGATtgtgattttttctttcatcgttgaaaaattcaaaaaagaagatt
acACATGAATAATGATTCTACtactcccagctggcacacaacgttgtttt
aacgttcaaataacgttatttggacgttatgaatgtcaaatggacgttat
TTTGatgttgtgtgccggctgggctGGTAAAATCATATTATAAGTATTCA
CATCACACGGAATCGTTGACCTAAAACATCacgaaaaattttaagaatca
cTGGAAAAAATATATCTATTTCACAGGGAAGATATAGGAGGTCGCTGATT
TTGAATTCTTCACTTTCAAAACTGGTAAGGAATTCAACCGCAGTTCACTT
TTATCTGTATGGGGACGAGTTCTTATAATATAGTTCGTTTAACAGCTAAT
TGGTGAATTCTTAGCCAGTTGGACTAATTCTTAAATAGCATGGGGACGGG
TTCTTTACCAATTTTTTAGTGTGAAATCTGGTCGGTAAAATAAGCTCCGG
TTGGTTTCTTTGTTTGCTTTGAATAAGATCAGTGACCCCCAAAAACCCCT
GATGCCATTTCGTTCTGTTCGTATTTATTAATAGTAATTGCAGTTATTCA
CTCCTTTTCagaacttgaaattcaaaagaacCAGCTTTTAAATATTATAC
CGATTCTAAGTACGGAATGGATATTGACGTTATCCGTACGTTTATACGCA
AAAGAAACAACGTGGTGTAACATAATACATTTAACGCAGAACGGTAAAGA
TGTCGATTACGGGGACCGTACGCCGTTTCTCGCTAAACGCTCATCGCCGT
CAGAATTCCGTATATCTTCTGCTGTTAACGGACAAACCAGTCATAATTTT
GACATACCAGGAGACGTTGTCGTTAATCAAACTTATTATTTTGAAATCCA
TCAACGTTATATTAGTAATGGGTCCTACAGATACTCTTTGGAGCTTGACG
GCGTTGAACAATATTCCATTCTAAACAATGACGCAAGACAATTTTATGAT
GTGAAAGTAATGGCAAGCAACAATTGGCAGACGAAATGCCCTGGTCTTAT
TAGTAACtttaaaatta Coding sequence (CDS) from alignment at scaffold_284:731185..732801+ >TCONS_00056871 ID=TCONS_00056871|Name=TCONS_00056871|organism=Clytia hemisphaerica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_284:731185..732801+ (Clytia hemisphaerica)
TGCTGCAATCTTTTCCCTGGTGATGGTACACCTACAAATAACCATGGAAG
AGAACCCATGGTAATCGTTGGAGAAAAAGaacttgaaattcaaaagaacC
AGCTTTTAAATATTATACCGATTCTAAGTACGGAATGGATATTGACGTTA
TCCGTACGTTTATACGCAAAAGAAACAACGTGGTGTAACATAATACATTT
AACGCAGAACGGTAAAGATGTCGATTACGGGGACCGTACGCCGTTTCTCG
CTAAACGCTCATCGCCGTCAGAATTCCGTATATCTTCTGCTGTTAACGGA
CAAACCAGTCATAATTTTGACATACCAGGAGACGTTGTCGTTAATCAAAC
TTATTATTTTGAAATCCATCAACGTTATATTAGTAATGGGTCCTACAGAT
ACTCTTTGGAGCTTGACGGCGTTGAACAATATTCCATTCTAAACAATGAC
GCAAGACAATTTTATGATGTGAAAGTAATGGCAAGCAACAATTGGCAGAC
GAAATGCCCTGGTCTTATTAGTAACtttaaaattTGCTGCAATCTTTTCC
CTGGTGATGGTACACCTACAAATAACCATGGAAGAGAACCCATGGTAATC
GTTGGAGAAAAAGaacttgaaattcaaaagaacCAGCTTTTAAATATTAT
ACCGATTCTAAGTACGGAATGGATATTGACGTTATCCGTACGTTTATACG
CAAAAGAAACAACGTGGTGTAACATAATACATTTAACGCAGAACGGTAAA
GATGTCGATTACGGGGACCGTACGCCGTTTCTCGCTAAACGCTCATCGCC
GTCAGAATTCCGTATATCTTCTGCTGTTAACGGACAAACCAGTCATAATT
TTGACATACCAGGAGACGTTGTCGTTAATCAAACTTATTATTTTGAAATC
CATCAACGTTATATTAGTAATGGGTCCTACAGATACTCTTTGGAGCTTGA
CGGCGTTGAACAATATTCCATTCTAAACAATGACGCAAGACAATTTTATG
ATGTGAAAGTAATGGCAAGCAACAATTGGCAGACGAAATGCCCTGGTCTT
ATTAGTAACtttaaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056871-exon-scaffold_284-1491911889:731185..731264 | TCONS_00056871-exon-scaffold_284-1491911889:731185..731264 | Clytia hemisphaerica | exon |
| TCONS_00056871-exon-scaffold_284-1510915933:731185..731264 | TCONS_00056871-exon-scaffold_284-1510915933:731185..731264 | Clytia hemisphaerica | exon |
| TCONS_00056871-exon-scaffold_284-1575043694:731185..731264 | TCONS_00056871-exon-scaffold_284-1575043694:731185..731264 | Clytia hemisphaerica | exon |
| TCONS_00056871-exon-scaffold_284-1491911889:732346..732801 | TCONS_00056871-exon-scaffold_284-1491911889:732346..732801 | Clytia hemisphaerica | exon |
| TCONS_00056871-exon-scaffold_284-1510915933:732346..732801 | TCONS_00056871-exon-scaffold_284-1510915933:732346..732801 | Clytia hemisphaerica | exon |
| TCONS_00056871-exon-scaffold_284-1575043694:732346..732801 | TCONS_00056871-exon-scaffold_284-1575043694:732346..732801 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:731185..732801 + |
Blast
The following BLAST results are available for this feature:
|
