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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056895 ID=TCONS_00056895|Name=TCONS_00056895|organism=Clytia hemisphaerica|type=transcript|length=1599bp
cattttcaataagTTCTATCCCAAattaaaagatgaaaaatacaatcaat
atttcaacaaatgtatttttttttaacagaacaaaaggaaattgaaaaaa
gaattaaaacaaACTAACACATGATGTCACTTAGATCGAAAAAACGAACA
AGTCAACAAAGTGGCTTGGACAACGAGCAACAACCCGCTgataaaacatc
aaaacaaaataataatgatgaagatgaaaatatgTTTGTTACACCTTGGA
AAGGTAGTGATGGTGTTCTAGTTGTGGAGGACAAAGAAATTCACATTCAT
ACTACAGTTTTATCACTGGCTTCTCCAGTCTTCGAGAAGATGTTTAATGG
CGATTTTGAAGAAGCTCAAACGAAGAGAGTTGTTTTGAAAGATAAAGAAT
ATGATTTGATTGAACACATGCTGAGAATCATTTATCCTGTACAATGCAGA
GTTGAACCAAAAATAAATCTACTCTGTGAAAGTTGCGTAGAGGCTGACTA
CAAGCTCAAGCTTCAACGAAAAATACTTCCGGAAGGAGTTAACAGATTGA
ATATTTGTAATACTGACACCTGTGAAAAATGCGGTCAACGATTTTTCAAA
GACGattcagaTAGGACGaacattttgaatcattttcaaAAGCTATACAA
ATTGTCAGAAGAATACTTCATCGAAGACATTCAACAAAAGATAAAGAGCC
AAGTCTATTTACAAAGTCAGCACATACAGTCAATTGATCATGCTTTCGAC
TTATTGGAAGCAGCTGAAAATACGAACCCAAATACTGAGGGTGTGAAAAA
CAATTGTATGGAATTCCTGGAAAAGAATTTACAAAGCTGGGAAGAGTTAT
CCAATGCATGTGGGTGCAGACCAAATCTTTCGTTCGTACTACAAATGGAG
TTGAAAGGACTTTTGTTAGgtaatttattgaaaagaatgAAGCCAAAGGT
ATTTTCTGAAGAGCAAGATATCAAAGCTGAAGCATTCAACATCGCAGCTT
ATATGCGTCATTTTGGAACCAATACTGAAGTTCTCGATTCTTTTCCTGAT
CAATAACGTTCGAAGACTTGTGCCTTATATAGAGCAACGATGAAAGTCAC
ATACATTAAAGACCTTTCGGTTTGATTAACTTACGTAACTTCCGCAATTA
AGGAAGCAAACATTCGGTTTCGCGTTtacaaattcgaacgtttgattTCA
TAAGGGCGTACTTTCGCTAATTCATTAAACTTTTGCTAAACCTATAAAAC
CTCTACAGTAGATTGAAGTTTTCTACATCGTGTTATCATAATTCATAATT
TTATAAATACACATAAGTCTTTTCTTTTCACCATTTATATTTATATTGGG
TTAATTCTCACGGGCGTGGTTACTTACAATGTTTTCTTGCGTTGATTTTG
GCTGATTCGAAAAAATACAGAATATCattgtttttgaaatatatcTTATG
AAGCTTTTTTATGGAGTAACATATTTTTAAAACCAGGCTAATAGCTTTAG
ATGAGTGTTTCTGTATCGAATGAATATTTATTCTCGATACGCGGATTTTC
AGTACCGTACCGTTTCtgtttttagtaacagagaggggtTAAACGCCGG Run BLAST on NCBI protein sequence of TCONS_00056895-protein >TCONS_00056895-protein ID=TCONS_00056895-protein|Name=TCONS_00056895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MMSLRSKKRTSQQSGLDNEQQPADKTSKQNNNDEDENMFVTPWKGSDGVL
VVEDKEIHIHTTVLSLASPVFEKMFNGDFEEAQTKRVVLKDKEYDLIEHM
LRIIYPVQCRVEPKINLLCESCVEADYKLKLQRKILPEGVNRLNICNTDT
CEKCGQRFFKDDSDRTNILNHFQKLYKLSEEYFIEDIQQKIKSQVYLQSQ
HIQSIDHAFDLLEAAENTNPNTEGVKNNCMEFLEKNLQSWEELSNACGCR
PNLSFVLQMELKGLLLGNLLKRMKPKVFSEEQDIKAEAFNIAAYMRHFGT
NTEVLDSFPDQ Run BLAST on NCBI transcript from alignment at scaffold_284:1165385..1168149+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056895 ID=TCONS_00056895|Name=TCONS_00056895|organism=Clytia hemisphaerica|type=transcript|length=2765bp|location=Sequence derived from alignment at scaffold_284:1165385..1168149+ (Clytia hemisphaerica)
cattttcaataagTTCTATCCCAAattaaaagatgaaaaatacaatcaat
atttcaacaaatgtatttttttttaacagaacaaaaggaaattgaaaaaa
gaattaaaacaaACTAACACATGATGTCACTTAGATCGAAAAAACGAACA
AGTCAACAAAGTGGCTTGGACAACGAGCAACAACCCGCTgataaaacatc
aaaacaaaataataatgatgaagatgaaaatatgTTTGTTACACCTTGGA
AAGGTAGTGATGGTGTTCTAGTTGTGGAGGACAAAGAAATTCACATTCAT
ACTACAGTTTTATCACTGGCTTCTCCAGTCTTCGAGAAGATGTTTAATGG
CGATTTTGAAGAAGCTCAAACGAAGAGAGTTGTTTTGAAAGATAAAGAAT
ATGATTTGATTGAACACATGCTGAGAATCATTTATCCTGTACAATGCAGA
GTTGGTAAGAGGATTCGTTTgtgtctttcattttttttccaagcatTGAG
TTTGGATTGGGATTGTTTATCGTAGAAATAACTAGTTTCAATTGTCACAA
TCTATCTGCAACCTAGATCAGACGGGTTCAGAGAAATAGATAAGCCTTGT
AAAGAAATCGGAATTTTCAAAGAGGCCTATATTCGTCAAGATTGGGTGCT
TTTTTCGACGGTATCTGTGGATGCACTGCACATCTCTTTGTCTGGAATTA
TCCCATGCGACCATGTTTAGACGTTACGGTATACCATCGTTTCGGTATGT
TTATGTTACGGATAGGAATTATTCGTATTGGTCTCAGAACGTATTGGAGC
AAGAAAACAGAGTAGTTCCGTTCTGGTGAAAACAGCGAAGCgtaaccaat
gaagtataagcatGAAGGGCTaagcgaatctttaacctttctcaggcaag
aaaaagtgaagcctagaaatatgcgccgtatttttgacgacggattgaat
ctagcgattcctttgttttgaagtgatatttctttcgaaatttagcagta
aattttagtttcaatctggcaTTTATGTAAAAACTAGGCGGGCCGCGCtg
ggccgcgcaactttggtaggatttattGGCGTCAAATACTACATTATACT
TCATTGGGCGTAACTGTTTCTATCCGTTTGCTTTGTagcgtcttcttttt
tgacgctTTGAAATTTGAGCGTCCACACACactgtttcggaaccgttttg
tTTGGAACTATATTGTGCTGAAAATACTGACTGAGCCGTTGGAGCCTTTT
GCCTCAAAGGGATACTGTAATTATTCTTCTACTTCTACTTCTTGACTTTT
ATTTAGAACCAAAAATAAATCTACTCTGTGAAAGTTGCGTAGAGGCTGAC
TACAAGCTCAAGCTTCAACGAAAAATACTTCCGGAAGGAGTTAACAGATT
GAATATTTGTAATACTGACACCTGTGAAAAATGCGGTCAACGATTTTTCA
AAGACGGTAAGACCATTTGCAgggtcattttagagattttttaataagaa
cgtcCAAAGGTTTTGAAGTCTTCAGATATTCTTCACATTTTGAGtctgaa
gcctaaaaatgttccattttctgagtatttttgtccattttcttttcATA
TGGGTAATTTTGTGTTTTAGAATctgcaaaaccttaaaatggtCTTAGCT
TGTTCGTGACATTTTTGCAATCGATCCCTTATTTTCTTTTATAgtttatt
cttacaaaaaacttGATGTGAGTGCGGCCTTCTGTAGGAAGATACTCGAA
GgcttaatgtttttttttagattcagaTAGGACGaacattttgaatcatt
ttcaaAAGCTATACAAATTGTCAGAAGAATACTTCATCGAAGACATTCAA
CAAAAGATAAAGAGCCAAGTCTATTTACAAAGTCAGCACATACAGTCAAT
TGATCATGCTTTCGACTTATTGGAAGCAGCTGAAAATACGAACCCAAATA
CTGAGGGTGTGAAAAACAATTGTATGGAATTCCTGGAAAAGAATTTACAA
AGCTGGGAAGAGTTATCCAATGCATGTGGGTGCAGACCAAATCTTTCGTT
CGTACTACAAATGGAGTTGAAAGGACTTTTGTTAGgtaatttattgaaaa
gaatgAAGCCAAAGGTATTTTCTGAAGAGCAAGATATCAAAGCTGAAGCA
TTCAACATCGCAGCTTATATGCGTCATTTTGGAACCAATACTGAAGTTCT
CGATTCTTTTCCTGATCAATAACGTTCGAAGACTTGTGCCTTATATAGAG
CAACGATGAAAGTCACATACATTAAAGACCTTTCGGTTTGATTAACTTAC
GTAACTTCCGCAATTAAGGAAGCAAACATTCGGTTTCGCGTTtacaaatt
cgaacgtttgattTCATAAGGGCGTACTTTCGCTAATTCATTAAACTTTT
GCTAAACCTATAAAACCTCTACAGTAGATTGAAGTTTTCTACATCGTGTT
ATCATAATTCATAATTTTATAAATACACATAAGTCTTTTCTTTTCACCAT
TTATATTTATATTGGGTTAATTCTCACGGGCGTGGTTACTTACAATGTTT
TCTTGCGTTGATTTTGGCTGATTCGAAAAAATACAGAATATCattgtttt
tgaaatatatcTTATGAAGCTTTTTTATGGAGTAACATATTTTTAAAACC
AGGCTAATAGCTTTAGATGAGTGTTTCTGTATCGAATGAATATTTATTCT
CGATACGCGGATTTTCAGTACCGTACCGTTTCtgtttttagtaacagaga
ggggtTAAACGCCGG Coding sequence (CDS) from alignment at scaffold_284:1165385..1168149+ >TCONS_00056895 ID=TCONS_00056895|Name=TCONS_00056895|organism=Clytia hemisphaerica|type=CDS|length=2808bp|location=Sequence derived from alignment at scaffold_284:1165385..1168149+ (Clytia hemisphaerica)
ATGATGTCACTTAGATCGAAAAAACGAACAAGTCAACAAAGTGGCTTGGA
CAACGAGCAACAACCCGCTgataaaacatcaaaacaaaataataatgatg
aagatgaaaatatgTTTGTTACACCTTGGAAAGGTAGTGATGGTGTTCTA
GTTGTGGAGGACAAAGAAATTCACATTCATACTACAGTTTTATCACTGGC
TTCTCCAGTCTTCGAGAAGATGTTTAATGGCGATTTTGAAGAAGCTCAAA
CGAAGAGAGTTGTTTTGAAAGATAAAGAATATGATTTGATTGAACACATG
CTGAGAATCATTTATCCTGTACAATGCAGAGTTGAACCAAAAATAAATCT
ACTCTGTGAAAGTTGCGTAGAGGCTGACTACAAGCTCAAGCTTCAACGAA
AAATACTTCCGGAAGGAGTTAACAGATTGAATATTTGTAATACTGACACC
TGTGAAAAATGCGGTCAACGATTTTTCAAAGACGattcagaTAGGACGaa
cattttgaatcattttcaaAAGCTATACAAATTGTCAGAAGAATACTTCA
TCGAAGACATTCAACAAAAGATAAAGAGCCAAGTCTATTTACAAAGTCAG
CACATACAGTCAATTGATCATGCTTTCGACTTATTGGAAGCAGCTGAAAA
TACGAACCCAAATACTGAGGGTGTGAAAAACAATTGTATGGAATTCCTGG
AAAAGAATTTACAAAGCTGGGAAGAGTTATCCAATGCATGTGGGTGCAGA
CCAAATCTTTCGTTCGTACTACAAATGGAGTTGAAAGGACTTTTGTTAGg
taatttattgaaaagaatgAAGCCAAAGGTATTTTCTGAAGAGCAAGATA
TCAAAGCTGAAGCATTCAACATCGCAGCTTATATGCGTCATTTTGGAACC
AATACTGAAGTTCTCGATTCTTTTCCTGATCAATAAATGATGTCACTTAG
ATCGAAAAAACGAACAAGTCAACAAAGTGGCTTGGACAACGAGCAACAAC
CCGCTgataaaacatcaaaacaaaataataatgatgaagatgaaaatatg
TTTGTTACACCTTGGAAAGGTAGTGATGGTGTTCTAGTTGTGGAGGACAA
AGAAATTCACATTCATACTACAGTTTTATCACTGGCTTCTCCAGTCTTCG
AGAAGATGTTTAATGGCGATTTTGAAGAAGCTCAAACGAAGAGAGTTGTT
TTGAAAGATAAAGAATATGATTTGATTGAACACATGCTGAGAATCATTTA
TCCTGTACAATGCAGAGTTGAACCAAAAATAAATCTACTCTGTGAAAGTT
GCGTAGAGGCTGACTACAAGCTCAAGCTTCAACGAAAAATACTTCCGGAA
GGAGTTAACAGATTGAATATTTGTAATACTGACACCTGTGAAAAATGCGG
TCAACGATTTTTCAAAGACGattcagaTAGGACGaacattttgaatcatt
ttcaaAAGCTATACAAATTGTCAGAAGAATACTTCATCGAAGACATTCAA
CAAAAGATAAAGAGCCAAGTCTATTTACAAAGTCAGCACATACAGTCAAT
TGATCATGCTTTCGACTTATTGGAAGCAGCTGAAAATACGAACCCAAATA
CTGAGGGTGTGAAAAACAATTGTATGGAATTCCTGGAAAAGAATTTACAA
AGCTGGGAAGAGTTATCCAATGCATGTGGGTGCAGACCAAATCTTTCGTT
CGTACTACAAATGGAGTTGAAAGGACTTTTGTTAGgtaatttattgaaaa
gaatgAAGCCAAAGGTATTTTCTGAAGAGCAAGATATCAAAGCTGAAGCA
TTCAACATCGCAGCTTATATGCGTCATTTTGGAACCAATACTGAAGTTCT
CGATTCTTTTCCTGATCAATAAATGATGTCACTTAGATCGAAAAAACGAA
CAAGTCAACAAAGTGGCTTGGACAACGAGCAACAACCCGCTgataaaaca
tcaaaacaaaataataatgatgaagatgaaaatatgTTTGTTACACCTTG
GAAAGGTAGTGATGGTGTTCTAGTTGTGGAGGACAAAGAAATTCACATTC
ATACTACAGTTTTATCACTGGCTTCTCCAGTCTTCGAGAAGATGTTTAAT
GGCGATTTTGAAGAAGCTCAAACGAAGAGAGTTGTTTTGAAAGATAAAGA
ATATGATTTGATTGAACACATGCTGAGAATCATTTATCCTGTACAATGCA
GAGTTGAACCAAAAATAAATCTACTCTGTGAAAGTTGCGTAGAGGCTGAC
TACAAGCTCAAGCTTCAACGAAAAATACTTCCGGAAGGAGTTAACAGATT
GAATATTTGTAATACTGACACCTGTGAAAAATGCGGTCAACGATTTTTCA
AAGACGattcagaTAGGACGaacattttgaatcattttcaaAAGCTATAC
AAATTGTCAGAAGAATACTTCATCGAAGACATTCAACAAAAGATAAAGAG
CCAAGTCTATTTACAAAGTCAGCACATACAGTCAATTGATCATGCTTTCG
ACTTATTGGAAGCAGCTGAAAATACGAACCCAAATACTGAGGGTGTGAAA
AACAATTGTATGGAATTCCTGGAAAAGAATTTACAAAGCTGGGAAGAGTT
ATCCAATGCATGTGGGTGCAGACCAAATCTTTCGTTCGTACTACAAATGG
AGTTGAAAGGACTTTTGTTAGgtaatttattgaaaagaatgAAGCCAAAG
GTATTTTCTGAAGAGCAAGATATCAAAGCTGAAGCATTCAACATCGCAGC
TTATATGCGTCATTTTGGAACCAATACTGAAGTTCTCGATTCTTTTCCTG
ATCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056895-exon-scaffold_284-1491911889:1165385..1165838 | TCONS_00056895-exon-scaffold_284-1491911889:1165385..1165838 | Clytia hemisphaerica | exon |
| TCONS_00056895-exon-scaffold_284-1510915933:1165385..1165838 | TCONS_00056895-exon-scaffold_284-1510915933:1165385..1165838 | Clytia hemisphaerica | exon |
| TCONS_00056895-exon-scaffold_284-1575043694:1165385..1165838 | TCONS_00056895-exon-scaffold_284-1575043694:1165385..1165838 | Clytia hemisphaerica | exon |
| TCONS_00056895-exon-scaffold_284-1491911889:1166691..1166840 | TCONS_00056895-exon-scaffold_284-1491911889:1166691..1166840 | Clytia hemisphaerica | exon |
| TCONS_00056895-exon-scaffold_284-1510915933:1166691..1166840 | TCONS_00056895-exon-scaffold_284-1510915933:1166691..1166840 | Clytia hemisphaerica | exon |
| TCONS_00056895-exon-scaffold_284-1575043694:1166691..1166840 | TCONS_00056895-exon-scaffold_284-1575043694:1166691..1166840 | Clytia hemisphaerica | exon |
| TCONS_00056895-exon-scaffold_284-1491911889:1167155..1168149 | TCONS_00056895-exon-scaffold_284-1491911889:1167155..1168149 | Clytia hemisphaerica | exon |
| TCONS_00056895-exon-scaffold_284-1510915933:1167155..1168149 | TCONS_00056895-exon-scaffold_284-1510915933:1167155..1168149 | Clytia hemisphaerica | exon |
| TCONS_00056895-exon-scaffold_284-1575043694:1167155..1168149 | TCONS_00056895-exon-scaffold_284-1575043694:1167155..1168149 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1165385..1168149 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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