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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056899 ID=TCONS_00056899|Name=TCONS_00056899|organism=Clytia hemisphaerica|type=transcript|length=852bp
TTATAGTAAAAAGTGAATcgaaatttaattgaaaaaaagtgatgGCGTCA
AATTACAACCAGTGGTTCAAAATAAAACTGATAAATAAAAGACCTCATAA
TGAAAACTCTGACGACGAAATACCATCAGAATCAACAAGAACTGGTGACG
CCTCGCCTTTTTCGAAACCTTGGAAGGGCAGCGATGCTGTCTTCATAGTT
GAGGATAAGGAACTTCATGTTCACATACAAACATTATCCTTGGCTTCACC
TGTGTTTGAAAAGATGTTCAATGGCAATTTTGTTGAAGCTCAAACTAAGA
GGGTGTCACTTGAAGGCAAATCGTTCAAAATAGTTGAAGCAATGTTAAAA
TTCATTTATCCGAGTAATGGCTGCAATTTAGGGAATGTCTGCAACTACAG
CATAATTGCCCGAGCAACATTCACATGCGATACTTGCAAACATCACCATA
TTCCTGATGACAAAAATGGCAAAAGAAATATGAATTTGGACGCGTTGCAT
CAGCTGTTTGATTTGTCAAACGAGTATATGATGGATAGATTGAATCAGAA
AGTCATAAAAAAGATTATTCAAGAAAGTGAATGCATCAAAAGTTCACGGA
CTTTTATGGTCATCAACTTGCTGTCTATAGGCAAAAAAATGTCACTTAGG
CAGATTGTTGATAATTGTCTTGCAGAGCTTACTAGAAGATCCCCGGCATA
CACAGTAAGACAAGGAATTATATTGGAAAAGCGCGTACGTATATGCGACT
TCTTTCGAGGAAGAGAAAACGAAGGACGGAATCTCAACGTGAAGGGTgca
tttcttaagaaacatgcTGCAATACTGAAGAAATATAAGCCATACATACG
NN Run BLAST on NCBI protein sequence of TCONS_00056899-protein >TCONS_00056899-protein ID=TCONS_00056899-protein|Name=TCONS_00056899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MASNYNQWFKIKLINKRPHNENSDDEIPSESTRTGDASPFSKPWKGSDAV
FIVEDKELHVHIQTLSLASPVFEKMFNGNFVEAQTKRVSLEGKSFKIVEA
MLKFIYPSNGCNLGNVCNYSIIARATFTCDTCKHHHIPDDKNGKRNMNLD
ALHQLFDLSNEYMMDRLNQKVIKKIIQESECIKSSRTFMVINLLSIGKKM
SLRQIVDNCLAELTRRSPAYTVRQGIILEKRVRICDFFRGRENEGRNLNV
KGAFLKKHAAILKKYKPYIX Run BLAST on NCBI transcript from alignment at scaffold_284:1199851..1202226+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056899 ID=TCONS_00056899|Name=TCONS_00056899|organism=Clytia hemisphaerica|type=transcript|length=2376bp|location=Sequence derived from alignment at scaffold_284:1199851..1202226+ (Clytia hemisphaerica)
TTATAGTAAAAAGTGAATcgaaatttaattgaaaaaaagtgatgGCGTCA
AATTACAACCAGTGGTTCAAAATAAAACTGATAAATAAAAGACCTCATAA
TGAAAACTCTGACGACGAAATACCATCAGAATCAACAAGAACTGGTGACG
CCTCGCCTTTTTCGAAACCTTGGAAGGGCAGCGATGCTGTCTTCATAGTT
GAGGATAAGGAACTTCATGTTCACATACAAACATTATCCTTGGCTTCACC
TGTGTTTGAAAAGATGTTCAATGGCAATTTTGTTGAAGCTCAAACTAAGA
GGGTGTCACTTGAAGGCAAATCGTTCAAAATAGTTGAAGCAATGTTAAAA
TTCATTTATCCGAGTAATGGCTGCAATTTAGGTAATCTTATATCATAATA
TCATTGTCCTATGCAAAAATCTAGAAATCTTGGTCAAACCGTAGTTTAGC
TTTTATTTAATAATTGTTACACTATTCACATGGCGAAGTGGCCGCCCTCT
GCCAACTGAGTCTACCTTGCCCTAAAGGAGTGACGTCACGTCCTATCCTG
GCTATCACAATTCCCTGTTCAACTCGACGATGTAagcccatagatttata
aagcccgaagggctagatggcgtgctttaagcttttccaagcaaaaaaaa
gtgaatattgcaaaaaatgttgctgctattgttttcgaaaacccgcgaag
cttctgatttgtcaagcgctgaaattttattgtaatgccacctgacttag
gtaggatttcctacctaacctcggcacaagcactctatctagcccttcgg
gcttttataAATTTATGTGCAAGCCAAGTGGATAAAATGTTGTTTTCCGT
CTTTCTCTCCTGAAGTTAGGGTTGTAGGTGATTTATTCATATTAATATTG
TGTTTATAgggacaaattttccccaaaactcaCTCGAGGATCAGCCATAA
TTTTACGCCAAACCTATATCTAACGACCGACGCTAGTTTCTTGGCTGTCT
GTCTATTCAACAATGAAGTAAAAACCCGAAAGGctaaaagaaaatcttta
acctttcgcagggaagaaaaaagtgaagccttataGGATATACGCCGTAT
TTTTTACGACGGATTGGTATAAGTGGTATTGTACTTTACAAGTGGTATAA
TCTAgcggaaaattttatttttaatccgGAATTTGTATAAGAACCACAGC
aaaaatacagcatttatgtacgcgtttttagccaatcagattgctcatat
ttttcatgttgacgataaaaactttatactaAAACATATTTTTATGTTGT
TTGCGATCATTATCATTTCACCATTCACAGGGAATGTCTGCAACTACAGC
ATAATTGCCCGAGCAACATTCACATGCGATACTTGCAAACATCACCATAT
TCCTGATGACAAAAGTAAGTTATCGCTCTTTCATACCTTTATTTCTTTCA
GATAGCGTGGTGTTAAGTAAAATAAATCTACTAGTAGTCTTCTGGTGTag
ctgtcggcggagccgggcGTGAGGGGGCCTATCCCCTTTCGTTTTTGCTG
GAGACCAGGGAGACCGAATGCTGAAGTAATGCGCTATACTTGCTGTCAGC
GCCCAGCTACTTAACCTCGCAATCAGATATCCAATCTAAGCTATTCATTT
GCTGAGTTGGTGGTGACCGGGAATCGAACCAACAAGCCTTgataataagc
ggggggggggggggggggaaaaaaaatgcccggggggaaaaaaaattaaa
agggggggaaaaaaacaaaaataagaaaaaaaaaaaaaaaaggggggggg
ggggggggttggaataaaaatgtcctgggtgtaaaaatattgaaaaggag
gctaatacagcagaattacgataaaaattaataagcggggggacggctat
taggtacccaagagtaaaCTAACTAGTCAAAGGATGTTATGTACAGTAAT
AAGGTAATTGTTTTGGGATTTCGTAATATTATCTTTTAGATGGCAAAAGA
AATATGAATTTGGACGCGTTGCATCAGCTGTTTGATTTGTCAAACGAGTA
TATGATGGATAGATTGAATCAGAAAGTCATAAAAAAGATTATTCAAGAAA
GTGAATGCATCAAAAGTTCACGGACTTTTATGGTCATCAACTTGCTGTCT
ATAGGCAAAAAAATGTCACTTAGGCAGATTGTTGATAATTGTCTTGCAGA
GCTTACTAGAAGATCCCCGGCATACACAGTAAGACAAGGAATTATATTGG
AAAAGCGCGTACGTATATGCGACTTCTTTCGAGGAAGAGAAAACGAAGGA
CGGAATCTCAACGTGAAGGGTgcatttcttaagaaacatgcTGCAATACT
GAAGAAATATAAGCCATACATACGNN Coding sequence (CDS) from alignment at scaffold_284:1199851..1202226+ >TCONS_00056899 ID=TCONS_00056899|Name=TCONS_00056899|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_284:1199851..1202226+ (Clytia hemisphaerica)
atgGCGTCAAATTACAACCAGTGGTTCAAAATAAAACTGATAAATAAAAG
ACCTCATAATGAAAACTCTGACGACGAAATACCATCAGAATCAACAAGAA
CTGGTGACGCCTCGCCTTTTTCGAAACCTTGGAAGGGCAGCGATGCTGTC
TTCATAGTTGAGGATAAGGAACTTCATGTTCACATACAAACATTATCCTT
GGCTTCACCTGTGTTTGAAAAGATGTTCAATGGCAATTTTGTTGAAGCTC
AAACTAAGAGGGTGTCACTTGAAGGCAAATCGTTCAAAATAGTTGAAGCA
ATGTTAAAATTCATTTATCCGAGTAATGGCTGCAATTTAGGGAATGTCTG
CAACTACAGCATAATTGCCCGAGCAACATTCACATGCGATACTTGCAAAC
ATCACCATATTCCTGATGACAAAAATGGCAAAAGAAATATGAATTTGGAC
GCGTTGCATCAGCTGTTTGATTTGTCAAACGAGTATATGATGGATAGATT
GAATCAGAAAGTCATAAAAAAGATTATTCAAGAAAGTGAATGCATCAAAA
GTTCACGGACTTTTATGGTCATCAACTTGCTGTCTATAGGCAAAAAAATG
TCACTTAGGCAGATTGTTGATAATTGTCTTGCAGAGCTTACTAGAAGATC
CCCGGCATACACAGTAAGACAAGGAATTATATTGGAAAAGCGCGTACGTA
TATGCGACTTCTTTCGAGGAAGAGAAAACGAAGGACGGAATCTCAACGTG
AAGGGTgcatttcttaagaaacatgcTGCAATACTGAAGAAATATAAGCC
ATACATACGNatgGCGTCAAATTACAACCAGTGGTTCAAAATAAAACTGA
TAAATAAAAGACCTCATAATGAAAACTCTGACGACGAAATACCATCAGAA
TCAACAAGAACTGGTGACGCCTCGCCTTTTTCGAAACCTTGGAAGGGCAG
CGATGCTGTCTTCATAGTTGAGGATAAGGAACTTCATGTTCACATACAAA
CATTATCCTTGGCTTCACCTGTGTTTGAAAAGATGTTCAATGGCAATTTT
GTTGAAGCTCAAACTAAGAGGGTGTCACTTGAAGGCAAATCGTTCAAAAT
AGTTGAAGCAATGTTAAAATTCATTTATCCGAGTAATGGCTGCAATTTAG
GGAATGTCTGCAACTACAGCATAATTGCCCGAGCAACATTCACATGCGAT
ACTTGCAAACATCACCATATTCCTGATGACAAAAATGGCAAAAGAAATAT
GAATTTGGACGCGTTGCATCAGCTGTTTGATTTGTCAAACGAGTATATGA
TGGATAGATTGAATCAGAAAGTCATAAAAAAGATTATTCAAGAAAGTGAA
TGCATCAAAAGTTCACGGACTTTTATGGTCATCAACTTGCTGTCTATAGG
CAAAAAAATGTCACTTAGGCAGATTGTTGATAATTGTCTTGCAGAGCTTA
CTAGAAGATCCCCGGCATACACAGTAAGACAAGGAATTATATTGGAAAAG
CGCGTACGTATATGCGACTTCTTTCGAGGAAGAGAAAACGAAGGACGGAA
TCTCAACGTGAAGGGTgcatttcttaagaaacatgcTGCAATACTGAAGA
AATATAAGCCATACATACGNatgGCGTCAAATTACAACCAGTGGTTCAAA
ATAAAACTGATAAATAAAAGACCTCATAATGAAAACTCTGACGACGAAAT
ACCATCAGAATCAACAAGAACTGGTGACGCCTCGCCTTTTTCGAAACCTT
GGAAGGGCAGCGATGCTGTCTTCATAGTTGAGGATAAGGAACTTCATGTT
CACATACAAACATTATCCTTGGCTTCACCTGTGTTTGAAAAGATGTTCAA
TGGCAATTTTGTTGAAGCTCAAACTAAGAGGGTGTCACTTGAAGGCAAAT
CGTTCAAAATAGTTGAAGCAATGTTAAAATTCATTTATCCGAGTAATGGC
TGCAATTTAGGGAATGTCTGCAACTACAGCATAATTGCCCGAGCAACATT
CACATGCGATACTTGCAAACATCACCATATTCCTGATGACAAAAATGGCA
AAAGAAATATGAATTTGGACGCGTTGCATCAGCTGTTTGATTTGTCAAAC
GAGTATATGATGGATAGATTGAATCAGAAAGTCATAAAAAAGATTATTCA
AGAAAGTGAATGCATCAAAAGTTCACGGACTTTTATGGTCATCAACTTGC
TGTCTATAGGCAAAAAAATGTCACTTAGGCAGATTGTTGATAATTGTCTT
GCAGAGCTTACTAGAAGATCCCCGGCATACACAGTAAGACAAGGAATTAT
ATTGGAAAAGCGCGTACGTATATGCGACTTCTTTCGAGGAAGAGAAAACG
AAGGACGGAATCTCAACGTGAAGGGTgcatttcttaagaaacatgcTGCA
ATACTGAAGAAATATAAGCCATACATACGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056899-exon-scaffold_284-1491911889:1199851..1200231 | TCONS_00056899-exon-scaffold_284-1491911889:1199851..1200231 | Clytia hemisphaerica | exon |
| TCONS_00056899-exon-scaffold_284-1510915933:1199851..1200231 | TCONS_00056899-exon-scaffold_284-1510915933:1199851..1200231 | Clytia hemisphaerica | exon |
| TCONS_00056899-exon-scaffold_284-1575043694:1199851..1200231 | TCONS_00056899-exon-scaffold_284-1575043694:1199851..1200231 | Clytia hemisphaerica | exon |
| TCONS_00056899-exon-scaffold_284-1491911889:1201181..1201264 | TCONS_00056899-exon-scaffold_284-1491911889:1201181..1201264 | Clytia hemisphaerica | exon |
| TCONS_00056899-exon-scaffold_284-1510915933:1201181..1201264 | TCONS_00056899-exon-scaffold_284-1510915933:1201181..1201264 | Clytia hemisphaerica | exon |
| TCONS_00056899-exon-scaffold_284-1575043694:1201181..1201264 | TCONS_00056899-exon-scaffold_284-1575043694:1201181..1201264 | Clytia hemisphaerica | exon |
| TCONS_00056899-exon-scaffold_284-1491911889:1201840..1202226 | TCONS_00056899-exon-scaffold_284-1491911889:1201840..1202226 | Clytia hemisphaerica | exon |
| TCONS_00056899-exon-scaffold_284-1510915933:1201840..1202226 | TCONS_00056899-exon-scaffold_284-1510915933:1201840..1202226 | Clytia hemisphaerica | exon |
| TCONS_00056899-exon-scaffold_284-1575043694:1201840..1202226 | TCONS_00056899-exon-scaffold_284-1575043694:1201840..1202226 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1199851..1202226 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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