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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056904 ID=TCONS_00056904|Name=TCONS_00056904|organism=Clytia hemisphaerica|type=transcript|length=1201bp
CATTCGGAACTGTGAAGACGGATTCCAAGTACAAGTAAACCGGATTACCA
GCAAGACATATAGCACAAACGAAGTGGAGCACCAAAAGAGCTTCGATGAT
CTTGGCAAGTACCAACAAAGTAGAAttttctgctcccttcgctatCCTTT
GTATCGTATCAACAATCGAAACTTCGATGACGTAATCACTGAATAATAAG
TAGGTCACATAGCCTGCTGCACAGTATAATATATAAACACATATAGCTGA
TGTTGTGACTGTCCTATTAAGAGATTCAGTATCTGGATCTATAGCTGCCA
GGCTCGGTAATACCAACATATATCCAGCAAGTGAGAAAAATATAGTGCCA
GAAACTGAGAAAAATGTGTATGGTGGTGTGTAGTCTATCCACGGTAGTGC
TTTCTCTAAGACACTCTTTGTTAAAGGGTCTGGCGGCAAGATATTATTTG
CTTGCACTATGTATCCTGATACAATAACCAAGAATAATGCAGTCACACTG
AAAAAAACAGCTGATGGTCCAACGAAACCCAATTCTTTGAAAGAACCGAT
CATTTGGGTTGGTAGCAGTCCCAAAAATGTGATAAGTAGCCAAATGCGAG
TTAAGTTTGATGAATTTAAATTCAATGGCAAGATTGGCAATGcagattct
aaaatggtagcAACAATCATTGTAGCAGAGACAACCAGGGAAAGGTTGCT
GGTGATTNAAAATGTTATAAGTAGCCAAATGCGAGTTAAGTTTGATGAAT
TTAAATTCAATGGCAAGATTGGCAATGcagattctaaaatggtagcAGCA
AACATGGTACACGAAACGACGAGGGAAAGGTTGCTGGATATTTGAATGCA
AGTAAAAAGCATATTGAGCCATGATTTCTTACCAAATGCACGTTCAGTGC
AATATTGTAATGGTCTCCGCAACGATTCGTCATTTTCCGGGGTTTTGCTT
AACAAATCACCAAATACGTAATTTGCAAGCATCGTACATGCATAAGCCAG
TGCCACATAGAAGAACAAAATAAAGAAATATGATGTGGTACTGATTTGGG
ACACAACCCCAGGGAGTAATATTGTAGCGGAGCCGAAGATGGTGCCAGTC
ATCATCATACCACTGACCACAGGGTTCATTTTCCTTGTGGTATCGGTTGT
TGGCGGCGCTTTCTTtttcatcttatttttttgtttgaatcactaatcta
g Run BLAST on NCBI transcript from alignment at scaffold_284:1346972..1354288+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056904 ID=TCONS_00056904|Name=TCONS_00056904|organism=Clytia hemisphaerica|type=transcript|length=7317bp|location=Sequence derived from alignment at scaffold_284:1346972..1354288+ (Clytia hemisphaerica)
CATTCGGAACTGTGAAGACGGATTCCAAGTACAAGTAAACCGGATTACCA
GCAAGACATATAGCACAAACGAAGTGGAGCACCAAAAGAGCTTCGATGAT
CTTGGCAAGTACCAACAAAGTAGAAttttctgctcccttcgctatCCTTT
GTATCGTATCAACAATCGAAACTTCGATGACGTAATCACTGAATAATAAG
TAGGTCACATAGCCTGCTGCACAGTATAATATATAAACACATATAGCTGA
TGTTGTGACTGTCCTATTAAGAGATTCAGTATCTGGATCTATAGCTGCCA
GGCTCGGTAATACCAACATATATCCAGCAAGTGAGAAAAATATAGTGCCA
GAAACTGAGAAAAATGTGTATGGTGGTGTGTAGTCTATCCACGGTAGTGC
TTTCTCTAAGACACTCTTTGTTAAAGGGTCTGGCGGCAAGATATTATTTG
CTTGCACTATGTATCCTGATACAATAACCAAGAATAATGCAGTCACACTG
AAAAAAACAGCTGATGGTCCAACGAAACCCAATTCTTTGAAAGAACCGAT
CATTTGGGTTGGTAGCAGTCCCAAAAATGTGATAAGTAGCCAAATGCGAG
TTAAGTTTGATGAATTTAAATTCAATGGCAAGATTGGCAATGcagattct
aaaatggtagcAACAATCATTGTAGCAGAGACAACCAGGGAAAGGTTGCT
GGTGATTNAAAATGTTATAAGTAGCCAAATGCGAGTTAAGTTTGATGAAT
TTAAATTCAATGGCAAGATTGGCAATGcagattctaaaatggtagcAGCA
AACATGGTACACGAAACGACGAGGGAAAGGTTGCTGGATATTTGAATGCA
AGTAAAAAGCATATTGAGCCATGATTTCTTACCAAATGCACGTTCAGTGC
AATATTGTAATGGTCTCCGCAACGATTCGTCATTTTCCGGGGTTTTGCTT
AACAAATCACCAAATACGTAATTTGCAAGCATTGTACAAGCGTATGACAA
TATCAAATAGAAAAATAGCATCAGAAAGAATGAGCCTACCCCGACTTGTG
AGACAACCCCAGGGAGTAAAATTGAAGCAGACCCGAAGATGGTGCCAGTC
ATCATCATACCGCTGACCACAGGGCTCATTTTTTTTACAGCGGAACTGGC
GGTTTGCGGCgctttctttttcatcttttgctctaaaaaaaagaaatgaa
aaaagattctCCTTTAAATCAAGTCAACAGATCCCTAACATAAGAGAGTT
AAAATTAGTTACAAATTTTTGCTATTCCATAATTCAATTTGATTCATGTT
GTCTGGGCAACCGTTAACTTTTGATCCATAGTGTTTGTTGTTAGTGCCTT
TCATTTCTCGTTCAAACATCATATCGCAATGTCATCCGTGACCAAAATGA
TTCTATCTAAAGTATAGACAACATACAGTAATACAAACTACTTATAAAGT
AAAATCAGGAATGTTATTGCATTTATTGTTGAtaagaaagaaattaaatt
tgtgGTTAGTTTCATACGACTAGATAttatcatggaggtataaatgTATG
TATTCTGCACACAATAAAAAGATTTGAGTCCACCATGATTAAATCTATCA
GTAAAGTGTTTCGATAGATAAACGACTGATATAGTAAGAAGGATTTTTGT
TACCTTAAAGAAGctaattttagcgggaacttattttcacggtcgaaaga
aaaaaatataaaaaatcgtgTTATATCGTATTTTACTGGAattatttttg
ggggttttgGCCTATTTTGGGCACATGTCTTTCATTTTCCTACgggtttt
tcaaattttttgataaaaaatggcCAAGTGAAATtgttttagaagaaaaa
aaattcactggAGATTATTATAATTGGAATGGGAATAAAATGGAATTTCT
TTTTCCTATTATCTACATATAAATCCAGGGGAGTAACTTAGGCGAAATAG
GTATGTgcaagccataagggtacccTTTTTCATACGtcaaaagtccctca
aaggggtacgAGTCGAGAGGTCAATCTTTCAAAAAGTCCCAAACTCACTA
AAATCGAGAATTTccctctcaaagggtcacgttttatcgaaaattttgac
aaaaatctttcaaacggactcaaaaatgtcaaattctttctctctatata
aaaaaaaaatcctaacaATCACGAATATTCTGACCCTTAGGTTGCCTGTA
CTAGATGACCATGGCNTTTTCtctatatataaaaaaaatcctaaaaatca
cGAATATTCCGACCCTTAGGTTGCCTGTACTAGATGACCATGGCTTTTTA
TTCATCGACACCGGTGATAAAAAATCGCATGTTGGGACAGAGATAGACTA
AGCCTTAGAGGGACtactttaaaattttctgaTGATTGTAACCCTTAGCA
GAGACTTACGAAGATGAAAAACCGATTCTTATcgtctgcacatacccagc
acccatttttacCTAAGTACACCTTTCCTCCCTCAAAGTAGGGCTAGAGA
CGatcaaaaatcacgaaaaatagCAAAGATGGAAAGTTAAACCAAAGACT
TTATCACGATCAAATTCTTGCacaaaactattttcaaaagaaaataactC
GACTCTTCTCTATGTTGCTATTGGAAAAGCATGTTAACAACAAGCTTTGA
AAAATACTGTCGTTACCCTGAATAAATAGAGATTGGATATCAAATAGAAA
CACAAGTTTGATAGAGTGTGTTTACAAAATCTACcctctgaaaataatca
gataagcaataTTGtaggggctcccccaggggctggcgtgacacgtgaat
gaGCCTTTTTTCTGACGTGAgtacgtgaattggacttttttagcgcgtga
atacgtgaattgagatatcagcgtgaacgtgaaaataagatttttccacc
gtgaattcgtgaatcgagatttttagcgtgaacgtgaaaagcaaatcatt
GTCTAAAATACAAGGAAACTCTAAAAATCTGTAAACCTAAATCTGTAAAA
TTTCTTGCTCGCCTCGCTTGCATAGTCTTGGATTAACTTATTGTCATTCG
AAATAACCAAAACTTTATAAcattaaaatcatcaaagatatcttaaacaa
atattttcattatttttctgagggcgtattttttcatttttaatgtcaat
ttttgtgatgcaaatacgagagcgtttttagccaaaacaaaagagtctag
agaaaattttctctgtCAGCGTTTAATAATGGTCATCTCTCCGTAGTCAC
TTATATTGTTActatacaatacaatacacaaaATGATACTGCGTTAACTT
AGAGAGATTTTTGCTCCTTCAATACTTTGcaaaagtaggtagttctaaaa
cATCTCGTATGCATGCAGCATCgaagaagtaaaaaataattctcatagat
aatgatgcacatgatgccttttcaagcaatctaggcattctaaattttaa
aagttttctcttGGGCGAAGCTCTTGGAAtaccgcaccgggtacggcagg
gaCGGCGCTNTTAAAAGTTTTCTCTTGGGCGAAGCTCTTGGAAtaccgca
ccgggtacggcaggtacgtcgcttgCTGTTTcagatttttgccaacaaat
ggtcagtgttgaataaaatcaaagaattgtgtgaccaaacaaggcagaCT
TGACTAACACTAGCGTATTAAGGTCGTTTTTTCAGTCATAaaagagcgaa
aattgtcgaaagaTTTCGCGCTCGCATTGCTTTTTTACATACATTTTTTT
CCCATGAAATAGGCAGGTGTCAAACATTGGAATTTGCGTCCTCTTGTTGT
ACACTACCGCTCCACctctttgaagtttttgttgaagtctacggcttctc
aaACCATGATTAGCCCAACCtcgatttaaaatcaaaaaagaccttttacg
ggtctgcgaggaagaaaATCCCACAACAACAGCCCACCCTACGCCAGAGG
GGtagttttttgtaacttttgcgcggcagacctaaaacaTTGCTCTATTA
AAGCttaaatagctgtaaaagatgcCTTAAATGATCGACGCTATCGataa
taaggtcacaaaactgcaaaaaactttatattggcgaaaatgtttggcaT
TAGCATAGGTCAAACCGTCTAAAGAAACCATAGAAAGGTCACAATCGATT
Taaccaaaaatataaaagcaaaattggcacgtgaacgtgaaaatggtttt
tttcgcgcgtgaatacgtgaattgataaaattttgtgcgtgaatacgtga
attgagggtcgactgggggggggggggctatttgtaatttttctcCTGCC
GTCACAGATTCCCctcatataaaaaaattaaaaaattttttttttgaaaa
ttggaaattgggggggggggggctttttttttttttttgggggggggggg
ggctcattgTACTATTTCTCCCATCCTCACTGAATCCCCAGCtataaaaa
aatgagaatatattaatccccatcgagttttaggctgttatttttacccc
cactggcatAGAAAAAAATGctatcgggtctgtgagaaggggtgtacaAT
TAGTTGCAAGTGGATAGTTTTGTCTCGTTTGGCAAAAAATTTCGTATGCA
ATCAATCGTTTTCCCTTCATTCCATGTCCGAGATAAAATTCTTTGATTCT
TTCAAGTCATTTGAGACAGTAAagacaaaaatgaaattgtattcatatct
taaaaatatctcgagaaatcgctaaaatttcaaacctccgttttgggggc
cattagaaaaatactagatttgagagaaatttcaaatttaatcgacgttt
tgggggccacatactgtagggttcaaagtttctttcaaaaattacgGACT
GTCCTTTTTTTTTGGAGCAGACTTGAGAATGCGAATGCGATccacaaaaa
ctcaaaataaaaccaagccttttgacaaaaaattgtcTTGCTATTCGagg
taaatcactaaaataaaaaatataaaaaataaatcaaaaataaatcataa
atcaaaaataattcacaaaTCTCGAACAAAATTTTCGAGAGATTTACCCC
TCGTTGCTATTATATTAACTGAGAGGagattttgctaaatttaaaAAGGC
ATTTGCTTAAATTTTGTCTTCCAAGTCGACTATTTGCAGATCAATCCAAC
AAAGAGACGCACCCAAAAGACTTAGAAATTATTTCAATTGTAAAATTAAC
TTCTCGATCTAAAGAAAAACATCTAACTACGACAAAAAAGCATGACAATA
GGTAAAGCCTTGGAAttcttgcagagtccggtgcgtcgacCCTTGAAAAT
tcgggggacagattgattttcACATCCGTTTgtactcataaccgcagcag
gtctccaaggtgagcagcATTTCTGAACAACAATTTTGGATTCTTGGATT
CCCTTAAAATTGGATATAGAAACTTGGTGATAGGTTTCACAACACCAAAC
TTCGTAAATACAGTGTACATCTaagtttaaaaactttaaaaagacacGCA
AGCTTCGAAATAACTTCAATATGTTTGATCTTTTATAAAAGAACATCCAG
TCCCACATAATTCACTCCAATTGCAATCACCAGCgataaagtaaataaaa
accAACAGAACACTTTGGTCGTTATTGAAGTTTCACATAAACACAAATAC
AAAATGATTGGAACGAATGTCGCCAGGTTGAACAAAAATCCTCCACCAAG
CCAAGATACGAATTGCGAAAGTTTTGGAAATATGATGACAATCAAAGTGC
AAGCACCAAAAATGAGAGTTCGTAGTAAAAACCGCTTCCAACAAAATTCT
ATGAGAAAATAAATAGTCTATTTTAACAAATATCGTATTACTTCGAACGC
CCCTTAGATTAAACGCACttcctaaaatcttaaaaatttatttaacgccc
gggcgtttattcgaagtcaTATGGTAGGGTCAAGAATTTTACAAAGTGTT
GAACGAGGCTGAGGAATGAACAATAAATTTACCCTTAACAGAGATTTTCA
GATAATCACTCTATCTCACTCAATTGTATGAAGGTCACCTTTcaactttt
ctgaaaaatcacccAAGTAGCATTTCATAACTAGCCCCTTCCTATCGTAT
CATACTACATATTCCTAAAAAAAGTCAAAGTCTATATTTCCTAGGGTGTT
TTGGTAAAAATGACCCCAAAATCAATCAATGATCGACTTTCTACCAACTC
CCCACTCCAAAGGAGTAAGTGATTTTTAAGGAGAAATATATAAAGCCTTA
CCATTCGGAACTGTGAAGACGGATTCCAAGTACAAGTAAACCGGATTACC
AGCAAGACATATAGCACAAACAAAGTGGAGCACCAAAAGAGCTTCAATGA
TCTTGGCAAATACCAACAAAGTAGAAttttctgctcccttcgctatCCTT
TGTATCGTATCAACAATCGAAACTTCGATGACGTAATCGTTGAATAATAA
GTAGGTCACATAGCCTGCTACACAGTACAATATATAAACACATACAGCTG
ATGTTGTGACTGTCCTATTAAGAGATCCAGTATCTGGATCTATAGCTGCC
AGGCTCGGTAATACCAACATATATCCAGCAAGTGAGAAAAATATAGTGCC
AGAAACTGAGAAAAATGTGTATGGTGGTGTGTAGTCTATCCACGGTAGTG
CTTTCTCTAAGACACTCTTTGTTAAAGGGTCTGGCGGCAAGATATTATTT
GCTTGCACTATGTATCCTGATACAATAACCAAGAATAATGCAGTCACACT
GAAAAAAACAGCTGATGGTCCAACGAAACCCAATTCTTTGAAAGAACCGA
TCATTTGGGTTGGTAGCAGTCCCAAAAATGTGATAAGTAGCCAAATGCGA
GTTAAGTTTGATGAATTTAAATTCAATGGCAAGATTGGCAATGcagattc
taaaatggtagcAACAATCATTGTAGCAGAGACAACCAGGGAAAGGTTGC
TGGTGATTTGAATGCAAGTAAAAAGTACATTGAGCCATGAATTCTTTCCA
AATGCACGTTCAGTACAATATTGTAATGGTCTCCGCAACGATTCGTCATT
TTCCAGGGTTTTGCTTAACAAATCACCAAATACATAATTAGCAAACATCG
TACATGCATAAGCCAGTGCCACATAGAAGAACAAAATAAAGAAATATGAT
GTGGTACTGATTTGGGACACAACCCCAGGGAGTAATATTGTAGCGGAGCC
GAAGATGGTGCCAGTCATCATCATACCACTGACCACAGGGTTCATTTTCC
TTGTGGTATCGGTTGTTGGCGGCGCTTTCTTtttcatcttatttttttgt
ttgaatcactaatctag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056904-exon-scaffold_284-1491911889:1346972..1347951 | TCONS_00056904-exon-scaffold_284-1491911889:1346972..1347951 | Clytia hemisphaerica | exon |
| TCONS_00056904-exon-scaffold_284-1510915933:1346972..1347951 | TCONS_00056904-exon-scaffold_284-1510915933:1346972..1347951 | Clytia hemisphaerica | exon |
| TCONS_00056904-exon-scaffold_284-1575043694:1346972..1347951 | TCONS_00056904-exon-scaffold_284-1575043694:1346972..1347951 | Clytia hemisphaerica | exon |
| TCONS_00056904-exon-scaffold_284-1491911889:1354068..1354288 | TCONS_00056904-exon-scaffold_284-1491911889:1354068..1354288 | Clytia hemisphaerica | exon |
| TCONS_00056904-exon-scaffold_284-1510915933:1354068..1354288 | TCONS_00056904-exon-scaffold_284-1510915933:1354068..1354288 | Clytia hemisphaerica | exon |
| TCONS_00056904-exon-scaffold_284-1575043694:1354068..1354288 | TCONS_00056904-exon-scaffold_284-1575043694:1354068..1354288 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1346972..1354288 + |
Blast
The following BLAST results are available for this feature:
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