TCONS_00056909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056909
Unique NameTCONS_00056909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length168

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056909 ID=TCONS_00056909|Name=TCONS_00056909|organism=Clytia hemisphaerica|type=transcript|length=168bp
ACTGCATCATTCAAATATGCTGGCTTTCAAGTTGGTTATTCGGCTTGGGg
cTATTTGATCAAGCATGCTgtgttttggttgattttttcatttttaagtg
tATTCTTCTTTGTTCCGTTATTTTATGGTGGCCCTTCGTTCCTAATTACA
CTTATAAAAGGATACTGG
Run BLAST on NCBI

transcript from alignment at scaffold_284:45271..45889-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056909 ID=TCONS_00056909|Name=TCONS_00056909|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at scaffold_284:45271..45889- (Clytia hemisphaerica)
ACTGCATCATTCAAATATGCTGGCTTTCAAGTTGGTTATTCGGCTTGGGG TAAGGTTTTCTTAAAAAATTTCACTTGAAATTACAGTGCCGGACACAGTA TTGAAGAAAAGGCATTAATATTTGACAGATTCAGTATATCTAAAAAACCT TTGGATACATGTCATCTTTAATTTTATCATAGCCTTTTATATTGAAAGAT TTCTCAATCTCTTGTACCATATAAAAACACCATTACTAAAGGCTTGGGGG AATGAGAAGTTTTCTTCACGTTGGTGCAATGCAACATGCCCGCAACATGC TCCATCCCGCCAACCTGAAACGCTTTCTTGTGTCTCCACCCCATTTTTCT TTCTACTAATAAAAGTATTGTCTCAGGGACAAAATGATGGGATAGAGCAT GCTGCATTGCACCAACGCGAAAAAAAACTTCTCATGTTCCTAAGCCTTAA GGATGGACAAAAGCATTATCGAATAGAAATTACTTTTTTTACTTTTTCAG GCTATTTGATCAAGCATGCTGTGTTTTGGTTGATTTTTTCATTTTTAAGT GTATTCTTCTTTGTTCCGTTATTTTATGGTGGCCCTTCGTTCCTAATTAC ACTTATAAAAGGATACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035851XLOC_035851Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056909-exon-scaffold_284-1575043694:45841..45889TCONS_00056909-exon-scaffold_284-1575043694:45841..45889Clytia hemisphaericaexon
TCONS_00056909-exon-scaffold_284-1575043694:45271..45389TCONS_00056909-exon-scaffold_284-1575043694:45271..45389Clytia hemisphaericaexon
TCONS_00056909-exon-scaffold_284-1510915933:45841..45889TCONS_00056909-exon-scaffold_284-1510915933:45841..45889Clytia hemisphaericaexon
TCONS_00056909-exon-scaffold_284-1510915933:45271..45389TCONS_00056909-exon-scaffold_284-1510915933:45271..45389Clytia hemisphaericaexon
TCONS_00056909-exon-scaffold_284-1491911889:45841..45889TCONS_00056909-exon-scaffold_284-1491911889:45841..45889Clytia hemisphaericaexon
TCONS_00056909-exon-scaffold_284-1491911889:45271..45389TCONS_00056909-exon-scaffold_284-1491911889:45271..45389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:45271..45889 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top