TCONS_00056921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056921
Unique NameTCONS_00056921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056921 ID=TCONS_00056921|Name=TCONS_00056921|organism=Clytia hemisphaerica|type=transcript|length=2391bp
TAGAGGATGAGATTGAAACAATTAGAAAATGGTATAAAGGGGTATACATA
TCAAAATGACTTTTTcgttcaaaaaaattatagaaaaatgtaACTATGTA
CAAAACACAAAATACTCCTTAGTCTCTTATTTACATtatggtttttattt
tttcgaaagaatgatagcgagtttatgtatgtgtgttttttgcGACGGAG
ACGGTGAGCCTTTATataatttgtctacatcctgactAAGTGTAGCCTAT
GCTaaacgtcacccgcgtttttttacgcaattaacgtctattccactttg
cgactttttcgaatgttttgagcccgggttttcgggctataaacattcga
ttttttgacgtcacttttaactatCGAAGCTCCTccagtagcaaaataat
cgaatttgcgtcaaaacacttgaaaggcttctatttttcgaaaatcgtca
aagtggaaatcactaagaaacgagatgaaaaatcccggtttttagtgagg
tgctcacCTGACTAACTGAGGACAACGGTAAATCAGAACTTAACTTAAAC
GGTCCTCGATTTttcgggtcagaactgcgggttgtTCTAAATTGCTTCAG
GCACTCAACCATCCttaaaaatgcaaatacataaactcgataATATTAAG
GTTGTCTGAATAAAAGAATATTGGGAAGCCCATACGTTACTAACCGGTCC
CAAACGACACCACGacaagatatttaaaaaaagaagcaaaaatcGCCAGT
GGTAGGGGTGGAACTGGCTTACTCGAGAATCCTAAAGGATCTAATATATT
TCAAGGTTTAATAATTCCAGGTTTAGGTGCTTCTTGAATGAATTTGACCG
AAAattttaaaaataaaatgaataataaaaaacaatatcATAATTTAAAT
ACACATAAAATCAATAATTTATCTTGTAAGTAAAGAAGCCTTTACCAatc
atcaaaaattaaataaacattttaataAGAAATACGTTAATCTTTATTTA
TcgtttttataaatttctatATTTTAGCTCTCTAATGTTAATGCACTAAC
TATAACTACACAATATATTACACTAATATATCATTCCTTATTTTACCATT
CAATGAAAAAGTAGGAACTTCTACCAATTAAAATTGCGTTTATTTTGATC
CAGTCCAGTCAGCTGTAGTGTGTCAAATCCGACTTCGTCTTTTTATATTG
ATACCAAAAGTGACAATTTcgtggatttttttttcatgactGTTGATGAT
TTGAGTAAAAAAAACTATTCATTAAACTTAATACCACCCGATTTTATCAC
GGTGAGTTCAAGTGAGGTTCTTTATCCTTTTGTTCCTCTGCTTTCAACAA
AATCATGATTCTTATAGTTCCGGTGGAAAGAGTCCGGTCAGCACTCACTT
TAATGATTAAAACATTTAATGACAATAATTCCATATTCTTCAAATATTTA
GTTTAGGATTATTATTTCCCTTCTGATTATTGGTAACAGGAAGGGTGAAT
GAGTCAAACCCCACAGTTGAAAAAACGATAGCCAGACAAAAGCGAGGTTC
AATATGAACTGTTTGATAAATTTGTCAACTTTCAGTTCTCGTCCTTCAAC
GCCACTTCGATCGATCCAGTCTCTTGTTGAAGGGCGTAGAATTCAAACGC
CCTGCCAGTAAACTGATAGAAGTAGGGCAGATCGTAAAAATAATGTTCTT
GTAGACAATGTTCAATGACGCGTCCTCTAAGCAACATGTTTCCATATTTG
ATACCATCTGCACGATCAGTGATCAAGCCTTCTTCAAGTAACCAGTCAAT
CAAACAAGTCCCTGTGAAAACACCTTCGaattttcgaagtctgaaactGT
GAGACAATAAAAAGATTAATTATTCAGAGCGAGAGTGTATTGATAGcttt
tctgctttttttttcttttcttttttcagatggaccAAAAAACTCAAAGC
GTTGGAAAGATATAATGGTTTGAAATAGTACTTTTAGTCTTTGCGATAGA
ATTTAAAATATGATACTAATTCGACGAAATGAAACTATTTTTCCCTCATG
AAGCAATCTTCCCGTCAAATAGTCACGATGCCCAGAATATAAAGTACTTA
ATACCTTTGCCTAAATTTTTTCACTCAACGAAGAAATATTGggccatttt
atttcattttacccTGTCTAGATACAGGCCAGACCCCATTACTCGAACAG
TTCGAACAGAATCGAACTACTCGaacttttggaaattttcgAGAAGCTCG
ATTGAAGAAAAGTTTGAGAAGTTTGACCGAAGAGAAGTTCGGGATGTTCC
CTCGAAGATAAGCTCGTGAAGTTCGATCGACGAAAAGTTCGAGTACATCA
AAACTTTTTACCAAAAGATATATAACTATAATTGAcagatt
Run BLAST on NCBI

transcript from alignment at scaffold_284:249076..251705-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056921 ID=TCONS_00056921|Name=TCONS_00056921|organism=Clytia hemisphaerica|type=transcript|length=2630bp|location=Sequence derived from alignment at scaffold_284:249076..251705- (Clytia hemisphaerica)
TAGAGGATGAGATTGAAACAATTAGAAAATGGTATAAAGGGGTATACATA
TCAAAATGACTTTTTCGTTCAAAAAAATTATAGAAAAATGTAACTATGTA
CAAAACACAAAATACTCCTTAGTCTCTTATTTACATTATGGTTTTTATTT
TTTCGAAAGAATGATAGCGAGTTTATGTATGTGTGTTTTTTGCGACGGAG
ACGGTGAGCCTTTATATAATTTGTCTACATCCTGACTAAGTGTAGCCTAT
GCTAAACGTCACCCGCGTTTTTTTACGCAATTAACGTCTATTCCACTTTG
CGACTTTTTCGAATGTTTTGAGCCCGGGTTTTCGGGCTATAAACATTCGA
TTTTTTGACGTCACTTTTAACTATCGAAGCTCCTCCAGTAGCAAAATAAT
CGAATTTGCGTCAAAACACTTGAAAGGCTTCTATTTTTCGAAAATCGTCA
AAGTGGAAATCACTAAGAAACGAGATGAAAAATCCCGGTTTTTAGTGAGG
TGCTCACCTGACTAACTGAGGACAACGGTAAATCAGAACTTAACTTAAAC
GGTCCTCGATTTTTCGGGTCAGAACTGCGGGTTGTTCTAAATTGCTTCAG
GCACTCAACCATCCTTAAAAATGCAAATACATAAACTCGATAATATTAAG
GTTGTCTGAATAAAAGAATATTGGGAAGCCCATACGTTACTAACCGGTCC
CAAACGACACCACGACAAGATATTTAAAAAAAGAAGCAAAAATCGCCAGT
GGTAGGGGTGGAACTGGCTTACTCGAGAATCCTAAAGGATCTAATATATT
TCAAGGTTTAATAATTCCAGGTTTAGGTGCTTCTTGAATGAATTTGACCG
AAAATTTCNCCATCCTTAAAAGTGCAAATACATAAACTCGCTAATTTAAG
GTTGTCTGAATAAAAGAATATTGGGAAGCCCATACGTTATACTAACCGGT
CCCAAACGGCAACATTTAAAAAAAGTTAAAATCGCCAGTGATAGGGGTGG
AACAGGCTTACTCGAGAATCCTAACGTTCTCATTATATTCCAAGGTTTGA
TAATTCCCGGGCTAGGTGCTCCTTGAATGAATTTGACCGAACATTTTAAA
AATAAAATGAATAATAAAAAACAATATCATAATTTAAATACACATAAAAT
CAATAATTTATCTTGTAAGTAAAGAAGCCTTTACCAATCATCAAAAATTA
AATAAACATTTTAATAAGAAATACGTTAATCTTTATTTATCGTTTTTATA
AATTTCTATATTTTAGCTCTCTAATGTTAATGCACTAACTATAACTACAC
AATATATTACACTAATATATCATTCCTTATTTTACCATTCAATGAAAAAG
TAGGAACTTCTACCAATTAAAATTGCGTTTATTTTGATCCAGTCCAGTCA
GCTGTAGTGTGTCAAATCCGACTTCGTCTTTTTATATTGATACCAAAAGT
GACAATTTCGTGGATTTTTTTTTCATGACTGTTGATGATTTGAGTAAAAA
AAACTATTCATTAAACTTAATACCACCCGATTTTATCACGGTGAGTTCAA
GTGAGGTTCTTTATCCTTTTGTTCCTCTGCTTTCAACAAAATCATGATTC
TTATAGTTCCGGTGGAAAGAGTCCGGTCAGCACTCACTTTAATGATTAAA
ACATTTAATGACAATAATTCCATATTCTTCAAATATTTAGTTTAGGATTA
TTATTTCCCTTCTGATTATTGGTAACAGGAAGGGTGAATGAGTCAAACCC
CACAGTTGAAAAAACGATAGCCAGACAAAAGCGAGGTTCAATATGAACTG
TTTGATAAATTTGTCAACTTTCAGTTCTCGTCCTTCAACGCCACTTCGAT
CGATCCAGTCTCTTGTTGAAGGGCGTAGAATTCAAACGCCCTGCCAGTAA
ACTGATAGAAGTAGGGCAGATCGTAAAAATAATGTTCTTGTAGACAATGT
TCAATGACGCGTCCTCTAAGCAACATGTTTCCATATTTGATACCATCTGC
ACGATCAGTGATCAAGCCTTCTTCAAGTAACCAGTCAATCAAACAAGTCC
CTGTGAAAACACCTTCGAATTTTCGAAGTCTGAAACTGTGAGACAATAAA
AAGATTAATTATTCAGAGCGAGAGTGTATTGATAGCTTTTCTGCTTTTTT
TTTCTTTTCTTTTTTCAGATGGACCAAAAAACTCAAAGCGTTGGAAAGAT
ATAATGGTTTGAAATAGTACTTTTAGTCTTTGCGATAGAATTTAAAATAT
GATACTAATTCGACGAAATGAAACTATTTTTCCCTCATGAAGCAATCTTC
CCGTCAAATAGTCACGATGCCCAGAATATAAAGTACTTAATACCTTTGCC
TAAATTTTTTCACTCAACGAAGAAATATTGGGCCATTTTATTTCATTTTA
CCCTGTCTAGATACAGGCCAGACCCCATTACTCGAACAGTTCGAACAGAA
TCGAACTACTCGAACTTTTGGAAATTTTCGAGAAGCTCGATTGAAGAAAA
GTTTGAGAAGTTTGACCGAAGAGAAGTTCGGGATGTTCCCTCGAAGATAA
GCTCGTGAAGTTCGATCGACGAAAAGTTCGAGTACATCAAAACTTTTTAC
CAAAAGATATATAACTATAATTGACAGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035858XLOC_035858Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056921-exon-scaffold_284-1575043694:250853..251705TCONS_00056921-exon-scaffold_284-1575043694:250853..251705Clytia hemisphaericaexon
TCONS_00056921-exon-scaffold_284-1575043694:249076..250613TCONS_00056921-exon-scaffold_284-1575043694:249076..250613Clytia hemisphaericaexon
TCONS_00056921-exon-scaffold_284-1510915933:250853..251705TCONS_00056921-exon-scaffold_284-1510915933:250853..251705Clytia hemisphaericaexon
TCONS_00056921-exon-scaffold_284-1510915933:249076..250613TCONS_00056921-exon-scaffold_284-1510915933:249076..250613Clytia hemisphaericaexon
TCONS_00056921-exon-scaffold_284-1491911889:250853..251705TCONS_00056921-exon-scaffold_284-1491911889:250853..251705Clytia hemisphaericaexon
TCONS_00056921-exon-scaffold_284-1491911889:249076..250613TCONS_00056921-exon-scaffold_284-1491911889:249076..250613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:249076..251705 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.339858	0.188448	0.331259	0.40639	2.11163	1.3643	1.18166	1.11978	0.808502	0.728096	0.435964	0.99792	0.729812	0.475414	0.469842	0.648349	0.238956	0.40128	0.355299	0.833834	1.87496	2.88051	0.424477	0.559485	0.462136	1.0121	1.07763	0.488812	1.70818	0.380795
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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