TCONS_00056924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056924
Unique NameTCONS_00056924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056924 ID=TCONS_00056924|Name=TCONS_00056924|organism=Clytia hemisphaerica|type=transcript|length=1894bp
TTGTTTAAAAAGTCCTACCTTTAACAATGCTTCTTTGTGGTGCTTAGACC
TCTCTAGTAATTTTCCACACATCTGATCACACGAGATGTACCTTTTGTAA
AACCTGTTTAAAGGTTCGTTAGACGTCccaacaatcaaaacaaaggtcgC
ATAGACCACGTATAATAAAACTCGTCAAACAGGTTTTGCTATATACCTGA
GCTAATAAAAAGGAGAGGCTGCACGCTTTTGATATTCAGCTCGTGGGCTT
TCAACTGCTGGTGCGAAGAAACACTCTACAACTCGTTGAACTTTATCAAG
AAATTGGATCCcaactttcaaaattcaaaatggtcaAGAAAGGATTAATG
GAAAGATTGAACAGCGATGAAGTTGTCATTGGAGATGGAGGTTTCGTCTT
TGCTCTTGAAAAACGTGGCTATGTTAAGGCTGGACCATGGACTCCAGAGG
CAGTCGTGGAAAGCCCAGAAGCTGtgaaaCAACTTCATCGTGAATTCTTG
CGAGCAGGTTCCACTGTTATGCAAACATTCACTTTCTACGCCAGTGAGGA
CAAACTTGATAACAGAGGAAATGAATGTGCAGCAAAGTATGGCGTCAAGG
AGATCAATGATGCTGCCTGCAGACTTGCTCGTGAAGTTGCTAACGAAGGT
GATGCTCTTGTTGCTGGTGGAATCTCTCAAACTCCTGCTTATCTCTCAGG
GCTCGGTAAAGAAAAAGTCCAAGCAGAATTCAAGAAACAGGTCGACTCAT
TTGTTGCAAACAAAGTCGACTTTTTGATTGCTGAATATTTTGAACACGTT
GAGGAAATCGAATGGGCTATTGAAGCTTTGAAGAAGTTTAGTGGTGGAAT
GGCTGTCTGTGCAAACATGTGTATTGGGGAGGAAGGTGATATGCATGGTG
TCAGTGCAGGAGAATGTGCAGTTCGAATGGCAAAAGCTGGTGCTGATGTA
GTTGGAATCAACTGTCATTTTGGACCTGTTGAAGTCATGCGTGGaattag
aaaaatgaaagaagctCTTGACAAAGAAGGCATCAAAGTTCACTTGATGA
CTCAACCTCTTGGATTCCACACTCCAGATGCAAAAGCCCAAGGTTTCATT
GATCTCCCAGAATTCCCTTTTGGATTAGAACCAAGAATCTGCACACGATT
CGATATGCATGCTTATGCTCGTGATGCTTATGAACTTGGTGTCCGATATA
TTGGAGGATGTTGTGGATTTGAACCATACCACATCAGAGCTTTGACACAA
GAGCTCCAAGAAGAAAGAGGTGTCATCCCAGAAGGAAGCAAAAAGCATCT
TCCATGGGGATCATCACTCGAACTTCACACTAAACCATGGGTACGTGCTC
GTGCAAACCGACCATACTGGGAGAACTTGAAGCCTGCAAGTGGCCGACCT
TTCTCATCGTCTATGTCTAACCCAGATCAATGGGGAGTCACTGCTGGCCA
TAAGGCCCTCAAACAACACTCTGAAAAAACCACCAAGGACGAAACTGGTG
GACTCAAGAATTACACTTCATAAATTCAAATAGCTATTAATGAAGCTTTT
tcagtttgttatttttaaaacagacatttagtgaatttttaaattgATCT
GTGTCCCCTCCAATTTTAAAGGAGATGGACATCTTTATTAgattttcttt
gtaaaatagatttttttctgCATAGCTATTTTGTAAATATGTTACTACAT
GAAAGGGatggaaatatattttttcgaactGTATTTATGGCTTCATTCTT
TTATTTCTAACAACCTGGGTTTAGTTGATAACATCAGTTGATAACCTCAG
TCAACCTTTTGCACACGTCTCTAAGAGAaataatcattaaaaaaaatctt
attgttTTAAATGTAAACCGACCAGCTAAAATGAAAGACTTCAG
Run BLAST on NCBI

protein sequence of TCONS_00056924-protein

>TCONS_00056924-protein ID=TCONS_00056924-protein|Name=TCONS_00056924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
MVKKGLMERLNSDEVVIGDGGFVFALEKRGYVKAGPWTPEAVVESPEAVK
QLHREFLRAGSTVMQTFTFYASEDKLDNRGNECAAKYGVKEINDAACRLA
REVANEGDALVAGGISQTPAYLSGLGKEKVQAEFKKQVDSFVANKVDFLI
AEYFEHVEEIEWAIEALKKFSGGMAVCANMCIGEEGDMHGVSAGECAVRM
AKAGADVVGINCHFGPVEVMRGIRKMKEALDKEGIKVHLMTQPLGFHTPD
AKAQGFIDLPEFPFGLEPRICTRFDMHAYARDAYELGVRYIGGCCGFEPY
HIRALTQELQEERGVIPEGSKKHLPWGSSLELHTKPWVRARANRPYWENL
KPASGRPFSSSMSNPDQWGVTAGHKALKQHSEKTTKDETGGLKNYTS
Run BLAST on NCBI

transcript from alignment at scaffold_284:419310..421894-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056924 ID=TCONS_00056924|Name=TCONS_00056924|organism=Clytia hemisphaerica|type=transcript|length=2585bp|location=Sequence derived from alignment at scaffold_284:419310..421894- (Clytia hemisphaerica)
TTGTTTAAAAAGTCCTACCTTTAACAATGCTTCTTTGTGGTGCTTAGACC
TCTCTAGTAATTTTCCACACATCTGATCACACGAGATGTACCTTTTGTAA
AACCTGTTTAAAGGTTCGTTAGACGTCCCAACAATCAAAACAAAGGTCGC
ATAGACCACGTATAATAAAACTCGTCAAACAGGTTTTGCTATATACCTGA
GCTAATAAAAAGGAGAGGCTGCACGCTTTTGATATTCAGCTCGTGGGCTT
TCAACTGCTGGTGCGAAGAAACACTCTACAACTCGTTGAACTTTATCAAG
AAATTGGATCCCAACTTTCAAAATTCAAAATGGTCAAGGTAAGGTTTTGT
CTTTTTTGTTGTTTTTCCTCGTGAGCATCCCGCCCTCTTTCTTTTTCTAC
TTCCTAGAATTCTTCATACTCGTTCCCAGTTCTTGTCTGGTTTGTTTACC
TTGTGTCTAGCCTCTTTCCGTCAAAACAAGTATCAAAAATCAACCCAATT
TTGGAAATTTTGAATTCTGATGCGGTATTCCGGCTAGATTTAAAAGAATT
TCACTTTCGTTTTCTACAGAAAGGATTAATGGAAAGATTGAACAGCGATG
AAGTTGTCATTGGAGATGGAGGTTTCGTCTTTGCTCTTGAAAAACGTGGC
TATGTTAAGGCTGGACCATGGACTCCAGAGGCAGTCGTGGAAAGCCCAGA
AGCTGGTAAGAATGTTTTTCCTGATTCAAAATATGCATATATTCACCAAC
ATCGGTTTAATTTGGGGTTCTTAGCTAGGAGAGTTTTGCTCATTTATCAT
TTAGTTCAACTGAAAATACATTTGAATTAGCTTCCATAAAAATACAATTT
GATCAAATCGTAGTTAGAAAGAAGCACAATGTATAATCCTATTTTTCTTT
TTAGTGAAACAACTTCATCGTGAATTCTTGCGAGCAGGTTCCACTGTTAT
GCAAACATTCACTTTCTACGCCAGTGAGGACAAACTTGATAACAGAGGAA
ATGAATGTGCAGCAAAGTATGGCGTCAAGGAGATCAATGATGCTGCCTGC
AGACTTGCTCGTGAAGTTGCTAACGAAGGTGATGCTCTTGTTGCTGGTGG
AATCTCTCAAACTCCTGCTTATCTCTCAGGGCTCGGTAAAGAAAAAGTCC
AAGCAGAATTCAAGAAACAGGTTGACTCCNTATCTCTCAGGGCTCGGCAA
AGAAAAAGTCCAAGCAGAATTCAAGAAACAGGTCGACTCATTTGTTGCAA
ACAAAGTCGACTTTTTGATTGCTGAATATTTTGAACACGTTGAGGAAATC
GAATGGGCTATTGAAGCTTTGAAGAAGTTTAGTGGTGGAATGGCTGTCTG
TGCAAACATGTGTATTGGGGAGGAAGGTGATATGCATGGTGTCAGTGCAG
GAGAATGTGCAGTTCGAATGGCAAAAGCTGGTGCTGATGTAGTTGGAATC
AACTGTCATTTTGGACCTGTTGAAGTCATGCGTGGAATTAGAAAAATGAA
AGAAGCTCTTGACAAAGAAGGCATCAAAGTTCACTTGATGACTCAACCTC
TTGGATTCCACACTCCAGATGCAAAAGCCCAAGGTTTCATTGATCTCCCA
GAATTCCCTTTTGGATTAGAACCAAGAATCTGCACACGATTCGATATGCA
TGCTTATGCTCGTGATGCTTATGAACTTGGTGTCCGATATATTGGAGGAT
GTTGTGGATTTGAACCATACCACATCAGAGCTTTGACACAAGAGGTAATA
TTTTTGCACTTATGCCCTTTCAAAGATTTTATGATATATACTTATAACTC
TTCATTCCACCTAAGAGAGGATAGCTTTTACTTTTTGATTAATGCTTAAC
AATCTGAGTAAAAAATCATAGACTTTAAGTTCTATCATAAATTCTCTTAG
TTTGTAGTTTTAATTATTAAATCATAATTGTTTTAATCTTTTAGCTCCAA
GAAGAAAGAGGTGTCATCCCAGAAGGAAGCAAAAAGCATCTTCCATGGGG
ATCATCACTCGAACTTCACACTAAACCATGGGTACGTGCTCGTGCAAACC
GACCATACTGGGAGAACTTGAAGCCTGCAAGTGGCCGACCTTTCTCATCG
TCTATGTCTAACCCAGATCAATGGGGAGTCACTGCTGGCCATAAGGCCCT
CAAACAACACTCTGAAAAAACCACCAAGGACGAAACTGGTGGACTCAAGA
ATTACACTTCATAAATTCAAATAGCTATTAATGAAGCTTTTTCAGTTTGT
TATTTTTAAAACAGACATTTAGTGAATTTTTAAATTGATCTGTGTCCCCT
CCAATTTTAAAGGAGATGGACATCTTTATTAGATTTTCTTTGTAAAATAG
ATTTTTTTCTGCATAGCTATTTTGTAAATATGTTACTACATGAAAGGGAT
GGAAATATATTTTTTCGAACTGTATTTATGGCTTCATTCTTTTATTTCTA
ACAACCTGGGTTTAGTTGATAACATCAGTTGATAACCTCAGTCAACCTTT
TGCACACGTCTCTAAGAGAAATAATCATTAAAAAAAATCTTATTGTTTTA
AATGTAAACCGACCAGCTAAAATGAAAGACTTCAG

Coding sequence (CDS) from alignment at scaffold_284:419310..421894-

>TCONS_00056924 ID=TCONS_00056924|Name=TCONS_00056924|organism=Clytia hemisphaerica|type=CDS|length=5970bp|location=Sequence derived from alignment at scaffold_284:419310..421894- (Clytia hemisphaerica)
CTCCAAGAAGAAAGAGGTGTCATCCCAGAAGGAAGCAAAAAGCATCTTCC
ATGGGGATCATCACTCGAACTTCACACTAAACCATGGGTACGTGCTCGTG
CAAACCGACCATACTGGGAGAACTTGAAGCCTGCAAGTGGCCGACCTTTC
TCATCGTCTATGTCTAACCCAGATCAATGGGGAGTCACTGCTGGCCATAA
GGCCCTCAAACAACACTCTGAAAAAACCACCAAGGACGAAACTGGTGGAC
TCAAGAATTACACTTCATAAGTCGACTCATTTGTTGCAAACAAAGTCGAC
TTTTTGATTGCTGAATATTTTGAACACGTTGAGGAAATCGAATGGGCTAT
TGAAGCTTTGAAGAAGTTTAGTGGTGGAATGGCTGTCTGTGCAAACATGT
GTATTGGGGAGGAAGGTGATATGCATGGTGTCAGTGCAGGAGAATGTGCA
GTTCGAATGGCAAAAGCTGGTGCTGATGTAGTTGGAATCAACTGTCATTT
TGGACCTGTTGAAGTCATGCGTGGAATTAGAAAAATGAAAGAAGCTCTTG
ACAAAGAAGGCATCAAAGTTCACTTGATGACTCAACCTCTTGGATTCCAC
ACTCCAGATGCAAAAGCCCAAGGTTTCATTGATCTCCCAGAATTCCCTTT
TGGATTAGAACCAAGAATCTGCACACGATTCGATATGCATGCTTATGCTC
GTGATGCTTATGAACTTGGTGTCCGATATATTGGAGGATGTTGTGGATTT
GAACCATACCACATCAGAGCTTTGACACAAGAGTGAAACAACTTCATCGT
GAATTCTTGCGAGCAGGTTCCACTGTTATGCAAACATTCACTTTCTACGC
CAGTGAGGACAAACTTGATAACAGAGGAAATGAATGTGCAGCAAAGTATG
GCGTCAAGGAGATCAATGATGCTGCCTGCAGACTTGCTCGTGAAGTTGCT
AACGAAGGTGATGCTCTTGTTGCTGGTGGAATCTCTCAAACTCCTGCTTA
TCTCTCAGGGCTCGGTAAAGAAAAAGTCCAAGCAGAATTCAAGAAACAGA
AAGGATTAATGGAAAGATTGAACAGCGATGAAGTTGTCATTGGAGATGGA
GGTTTCGTCTTTGCTCTTGAAAAACGTGGCTATGTTAAGGCTGGACCATG
GACTCCAGAGGCAGTCGTGGAAAGCCCAGAAGCTGATGGTCAAGCTCCAA
GAAGAAAGAGGTGTCATCCCAGAAGGAAGCAAAAAGCATCTTCCATGGGG
ATCATCACTCGAACTTCACACTAAACCATGGGTACGTGCTCGTGCAAACC
GACCATACTGGGAGAACTTGAAGCCTGCAAGTGGCCGACCTTTCTCATCG
TCTATGTCTAACCCAGATCAATGGGGAGTCACTGCTGGCCATAAGGCCCT
CAAACAACACTCTGAAAAAACCACCAAGGACGAAACTGGTGGACTCAAGA
ATTACACTTCATAAGTCGACTCATTTGTTGCAAACAAAGTCGACTTTTTG
ATTGCTGAATATTTTGAACACGTTGAGGAAATCGAATGGGCTATTGAAGC
TTTGAAGAAGTTTAGTGGTGGAATGGCTGTCTGTGCAAACATGTGTATTG
GGGAGGAAGGTGATATGCATGGTGTCAGTGCAGGAGAATGTGCAGTTCGA
ATGGCAAAAGCTGGTGCTGATGTAGTTGGAATCAACTGTCATTTTGGACC
TGTTGAAGTCATGCGTGGAATTAGAAAAATGAAAGAAGCTCTTGACAAAG
AAGGCATCAAAGTTCACTTGATGACTCAACCTCTTGGATTCCACACTCCA
GATGCAAAAGCCCAAGGTTTCATTGATCTCCCAGAATTCCCTTTTGGATT
AGAACCAAGAATCTGCACACGATTCGATATGCATGCTTATGCTCGTGATG
CTTATGAACTTGGTGTCCGATATATTGGAGGATGTTGTGGATTTGAACCA
TACCACATCAGAGCTTTGACACAAGAGTGAAACAACTTCATCGTGAATTC
TTGCGAGCAGGTTCCACTGTTATGCAAACATTCACTTTCTACGCCAGTGA
GGACAAACTTGATAACAGAGGAAATGAATGTGCAGCAAAGTATGGCGTCA
AGGAGATCAATGATGCTGCCTGCAGACTTGCTCGTGAAGTTGCTAACGAA
GGTGATGCTCTTGTTGCTGGTGGAATCTCTCAAACTCCTGCTTATCTCTC
AGGGCTCGGTAAAGAAAAAGTCCAAGCAGAATTCAAGAAACAGAAAGGAT
TAATGGAAAGATTGAACAGCGATGAAGTTGTCATTGGAGATGGAGGTTTC
GTCTTTGCTCTTGAAAAACGTGGCTATGTTAAGGCTGGACCATGGACTCC
AGAGGCAGTCGTGGAAAGCCCAGAAGCTGATGGTCAAGCTCCAAGAAGAA
AGAGGTGTCATCCCAGAAGGAAGCAAAAAGCATCTTCCATGGGGATCATC
ACTCGAACTTCACACTAAACCATGGGTACGTGCTCGTGCAAACCGACCAT
ACTGGGAGAACTTGAAGCCTGCAAGTGGCCGACCTTTCTCATCGTCTATG
TCTAACCCAGATCAATGGGGAGTCACTGCTGGCCATAAGGCCCTCAAACA
ACACTCTGAAAAAACCACCAAGGACGAAACTGGTGGACTCAAGAATTACA
CTTCATAAGTCGACTCATTTGTTGCAAACAAAGTCGACTTTTTGATTGCT
GAATATTTTGAACACGTTGAGGAAATCGAATGGGCTATTGAAGCTTTGAA
GAAGTTTAGTGGTGGAATGGCTGTCTGTGCAAACATGTGTATTGGGGAGG
AAGGTGATATGCATGGTGTCAGTGCAGGAGAATGTGCAGTTCGAATGGCA
AAAGCTGGTGCTGATGTAGTTGGAATCAACTGTCATTTTGGACCTGTTGA
AGTCATGCGTGGAATTAGAAAAATGAAAGAAGCTCTTGACAAAGAAGGCA
TCAAAGTTCACTTGATGACTCAACCTCTTGGATTCCACACTCCAGATGCA
AAAGCCCAAGGTTTCATTGATCTCCCAGAATTCCCTTTTGGATTAGAACC
AAGAATCTGCACACGATTCGATATGCATGCTTATGCTCGTGATGCTTATG
AACTTGGTGTCCGATATATTGGAGGATGTTGTGGATTTGAACCATACCAC
ATCAGAGCTTTGACACAAGAGTGAAACAACTTCATCGTGAATTCTTGCGA
GCAGGTTCCACTGTTATGCAAACATTCACTTTCTACGCCAGTGAGGACAA
ACTTGATAACAGAGGAAATGAATGTGCAGCAAAGTATGGCGTCAAGGAGA
TCAATGATGCTGCCTGCAGACTTGCTCGTGAAGTTGCTAACGAAGGTGAT
GCTCTTGTTGCTGGTGGAATCTCTCAAACTCCTGCTTATCTCTCAGGGCT
CGGTAAAGAAAAAGTCCAAGCAGAATTCAAGAAACAGAAAGGATTAATGG
AAAGATTGAACAGCGATGAAGTTGTCATTGGAGATGGAGGTTTCGTCTTT
GCTCTTGAAAAACGTGGCTATGTTAAGGCTGGACCATGGACTCCAGAGGC
AGTCGTGGAAAGCCCAGAAGCTGATGGTCAAGCTCCAAGAAGAAAGAGGT
GTCATCCCAGAAGGAAGCAAAAAGCATCTTCCATGGGGATCATCACTCGA
ACTTCACACTAAACCATGGGTACGTGCTCGTGCAAACCGACCATACTGGG
AGAACTTGAAGCCTGCAAGTGGCCGACCTTTCTCATCGTCTATGTCTAAC
CCAGATCAATGGGGAGTCACTGCTGGCCATAAGGCCCTCAAACAACACTC
TGAAAAAACCACCAAGGACGAAACTGGTGGACTCAAGAATTACACTTCAT
AAGTCGACTCATTTGTTGCAAACAAAGTCGACTTTTTGATTGCTGAATAT
TTTGAACACGTTGAGGAAATCGAATGGGCTATTGAAGCTTTGAAGAAGTT
TAGTGGTGGAATGGCTGTCTGTGCAAACATGTGTATTGGGGAGGAAGGTG
ATATGCATGGTGTCAGTGCAGGAGAATGTGCAGTTCGAATGGCAAAAGCT
GGTGCTGATGTAGTTGGAATCAACTGTCATTTTGGACCTGTTGAAGTCAT
GCGTGGAATTAGAAAAATGAAAGAAGCTCTTGACAAAGAAGGCATCAAAG
TTCACTTGATGACTCAACCTCTTGGATTCCACACTCCAGATGCAAAAGCC
CAAGGTTTCATTGATCTCCCAGAATTCCCTTTTGGATTAGAACCAAGAAT
CTGCACACGATTCGATATGCATGCTTATGCTCGTGATGCTTATGAACTTG
GTGTCCGATATATTGGAGGATGTTGTGGATTTGAACCATACCACATCAGA
GCTTTGACACAAGAGTGAAACAACTTCATCGTGAATTCTTGCGAGCAGGT
TCCACTGTTATGCAAACATTCACTTTCTACGCCAGTGAGGACAAACTTGA
TAACAGAGGAAATGAATGTGCAGCAAAGTATGGCGTCAAGGAGATCAATG
ATGCTGCCTGCAGACTTGCTCGTGAAGTTGCTAACGAAGGTGATGCTCTT
GTTGCTGGTGGAATCTCTCAAACTCCTGCTTATCTCTCAGGGCTCGGTAA
AGAAAAAGTCCAAGCAGAATTCAAGAAACAGAAAGGATTAATGGAAAGAT
TGAACAGCGATGAAGTTGTCATTGGAGATGGAGGTTTCGTCTTTGCTCTT
GAAAAACGTGGCTATGTTAAGGCTGGACCATGGACTCCAGAGGCAGTCGT
GGAAAGCCCAGAAGCTGATGGTCAAGCTCCAAGAAGAAAGAGGTGTCATC
CCAGAAGGAAGCAAAAAGCATCTTCCATGGGGATCATCACTCGAACTTCA
CACTAAACCATGGGTACGTGCTCGTGCAAACCGACCATACTGGGAGAACT
TGAAGCCTGCAAGTGGCCGACCTTTCTCATCGTCTATGTCTAACCCAGAT
CAATGGGGAGTCACTGCTGGCCATAAGGCCCTCAAACAACACTCTGAAAA
AACCACCAAGGACGAAACTGGTGGACTCAAGAATTACACTTCATAAGTCG
ACTCATTTGTTGCAAACAAAGTCGACTTTTTGATTGCTGAATATTTTGAA
CACGTTGAGGAAATCGAATGGGCTATTGAAGCTTTGAAGAAGTTTAGTGG
TGGAATGGCTGTCTGTGCAAACATGTGTATTGGGGAGGAAGGTGATATGC
ATGGTGTCAGTGCAGGAGAATGTGCAGTTCGAATGGCAAAAGCTGGTGCT
GATGTAGTTGGAATCAACTGTCATTTTGGACCTGTTGAAGTCATGCGTGG
AATTAGAAAAATGAAAGAAGCTCTTGACAAAGAAGGCATCAAAGTTCACT
TGATGACTCAACCTCTTGGATTCCACACTCCAGATGCAAAAGCCCAAGGT
TTCATTGATCTCCCAGAATTCCCTTTTGGATTAGAACCAAGAATCTGCAC
ACGATTCGATATGCATGCTTATGCTCGTGATGCTTATGAACTTGGTGTCC
GATATATTGGAGGATGTTGTGGATTTGAACCATACCACATCAGAGCTTTG
ACACAAGAGTGAAACAACTTCATCGTGAATTCTTGCGAGCAGGTTCCACT
GTTATGCAAACATTCACTTTCTACGCCAGTGAGGACAAACTTGATAACAG
AGGAAATGAATGTGCAGCAAAGTATGGCGTCAAGGAGATCAATGATGCTG
CCTGCAGACTTGCTCGTGAAGTTGCTAACGAAGGTGATGCTCTTGTTGCT
GGTGGAATCTCTCAAACTCCTGCTTATCTCTCAGGGCTCGGTAAAGAAAA
AGTCCAAGCAGAATTCAAGAAACAGAAAGGATTAATGGAAAGATTGAACA
GCGATGAAGTTGTCATTGGAGATGGAGGTTTCGTCTTTGCTCTTGAAAAA
CGTGGCTATGTTAAGGCTGGACCATGGACTCCAGAGGCAGTCGTGGAAAG
CCCAGAAGCTGATGGTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035860XLOC_035860Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056924-exon-scaffold_284-1575043694:421557..421894TCONS_00056924-exon-scaffold_284-1575043694:421557..421894Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1575043694:421190..421325TCONS_00056924-exon-scaffold_284-1575043694:421190..421325Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1575043694:420725..420990TCONS_00056924-exon-scaffold_284-1575043694:420725..420990Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1575043694:420151..420663TCONS_00056924-exon-scaffold_284-1575043694:420151..420663Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1575043694:419310..419950TCONS_00056924-exon-scaffold_284-1575043694:419310..419950Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1510915933:421557..421894TCONS_00056924-exon-scaffold_284-1510915933:421557..421894Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1510915933:421190..421325TCONS_00056924-exon-scaffold_284-1510915933:421190..421325Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1510915933:420725..420990TCONS_00056924-exon-scaffold_284-1510915933:420725..420990Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1510915933:420151..420663TCONS_00056924-exon-scaffold_284-1510915933:420151..420663Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1510915933:419310..419950TCONS_00056924-exon-scaffold_284-1510915933:419310..419950Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1491911889:421557..421894TCONS_00056924-exon-scaffold_284-1491911889:421557..421894Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1491911889:421190..421325TCONS_00056924-exon-scaffold_284-1491911889:421190..421325Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1491911889:420725..420990TCONS_00056924-exon-scaffold_284-1491911889:420725..420990Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1491911889:420151..420663TCONS_00056924-exon-scaffold_284-1491911889:420151..420663Clytia hemisphaericaexon
TCONS_00056924-exon-scaffold_284-1491911889:419310..419950TCONS_00056924-exon-scaffold_284-1491911889:419310..419950Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056924-proteinTCONS_00056924-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:419310..421894 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1764.94	1815.52	420.578	220.942	9.85268	7.94278	260.274	242.956	997.316	430.687	505.26	699.08	759.539	1147.02	175.606	149.551	222.026	260.846	394.84	58.3654	126.459	108.609	946.87	1258.85	1047.26	1263.65	127.233	677.576	290.249	385.742
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003726HCY_dom
IPR017226Betaine-hCys_S-MeTrfase_BHMT
Vocabulary: Molecular Function
TermDefinition
GO:0047150betaine-homocysteine S-methyltransferase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0009086methionine biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009086 methionine biosynthetic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0047150 betaine-homocysteine S-methyltransferase activity
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00056924 vs. Swiss-Prot (Human)
Match: BHMT1 (Betaine--homocysteine S-methyltransferase 1 OS=Homo sapiens GN=BHMT PE=1 SV=2)

HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0
Identity = 253/389 (65.04%), Postives = 305/389 (78.41%), Query Frame = 3 
Query:  327 KMVKKGLMERLNSDEVVIGDGGFVFALEKRGYVKAGPWTPEAVVESPEAVKQLHREFLRAGSTVMQTFTFYASEDKLDNRGNECAAKYGVKEINDAACRLAREVANEGDALVAGGISQTPAYLSGLGKEKVQAEFKKQVDSFVANKVDFLIAEYFEHVEEIEWAIEALKKFSGGMAVCANMCIGEEGDMHGVSAGECAVRMAKAGADVVGINCHFGPVEVMRGIRKMKEALDKEGIKVHLMTQPLGFHTPDAKAQGFIDLPEFPFGLEPRICTRFDMHAYARDAYELGVRYIGGCCGFEPYHIRALTQELQEERGVIPEGSKKHLPWGSSLELHTKPWVRARANRPYWENLKPASGRPFSSSMSNPDQWGVTAGHKALKQHSEKTTKDE 1493
            K  KKG++ERLN+ E+VIGDGGFVFALEKRGYVKAGPWTPEA VE PEAV+QLHREFLRAGS VMQTFTFYASEDKL+NRGN    K   +E+N+AAC +AR+VA+EGDALVAGG+SQTP+YLS   + +V+  F +Q++ F+   VDFLIAEYFEHVEE  WA+E L   + G  V A MCIG EGD+HGV  GECAVR+ KAGA ++G+NCHF P   ++ ++ MKE L+   +K HLM+QPL +HTPD   QGFIDLPEFPFGLEPR+ TR+D+  YAR+AY LGVRYIGGCCGFEPYHIRA+ +EL  ERG +P  S+KH  WGS L++HTKPWVRARA + YWENL+ ASGRP++ SMS PD WGVT G   L Q  E TT+ +
Sbjct:    7 KKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAGGVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETL--IASGKPVAATMCIGPEGDLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARLKAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPDGWGVTKGTAELMQQKEATTEQQ 393
The following BLAST results are available for this feature:
BLAST of TCONS_00056924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BHMT10.000e+065.04Betaine--homocysteine S-methyltransferase 1 OS=Hom... [more]
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