TCONS_00056948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056948
Unique NameTCONS_00056948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2022

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056948 ID=TCONS_00056948|Name=TCONS_00056948|organism=Clytia hemisphaerica|type=transcript|length=2022bp
TACACGTCCATTCTTGTTATATATTCGAAGGATTTTGTTTTAGGAGATTT
CATTTTTAGTGGGATTCATATATACAATACTTGGAGGCCACGGTATCATT
TTCTTATTGTTTTAGTGGGTAAAAGACGATAAATATTCTCATAAACTAAA
AAACCATGGCTGCTCCTATACAACAAATTTCAAATGGCGCTATACCAATT
ATGTCTGGTGTTGCAGGAACTCCAGTTCAACAGCCAGCTGTTGTttacca
acaacaacaaccaatgATTGTCGCAGGTGCTGCTCCGATGGGTTACGCAC
CACGAAAGCCCTACATCAGGAATCCGAATGAGGAGCATTGCAAAATCTTT
GTCGGAGGTGTTGGTAAATTGACAAATGATGAATCTCTTAGAGCCTACTT
TGGAAAATTCGGAGAAATTGCAGATAGTGTTATAATGAAAGATAAACATA
CAAATGAGCCAAGAGGGTTTGCATTCGTCACATTCAAAACACCAGAAGCT
GTTTCAGCTGTCATTGAACAAAATAATAAAGGTGGACATACTCTTGATGG
AAAAATGTTTATTGAAGTACGAAAGTTCCAGAGAAAATCTGAGtatgACC
CAGATAAGGCCAACACAACTCTTACTACTGCCAATGGTGCTGCACAACTT
AACTTTCAATACAAAGGTCCAATGAAGTGCTCACCAGAAATGAAAGTTTT
TGTTGGTGGAATTGGTATTGGTACAACAGAGGATGatgtaaagaaatatt
ttgaacaatttgGAAAGGTCCTTGCTGTCGATATGCCTGTTCATCATGTG
TATAAATGTCCCAAAGGCTTTGCATTTGTTGGATTTGAGACATTTGATGT
AGTTGCAGCTGTAACAAAAGATCGATATCATCAGATAAATGGAAAAACGG
TCGAAGTAAAAGGCTCAGATGAGCAGCAAGCACATTTGAACAAAAAGAAG
GCTGAAGCTATCCGGTATGCTTCTGCTGGAAGAGGTAGAGGAATTGGATC
AGGAAATATTGGAACAGTGACAGGATACGGTGCATATGCAAACCTTGGTC
AACCATTAATCGTAAACCCTGCTCAACATAGTGTACAATATACAGtTCCT
GCTGCAGCAACTGGTGGATATGTGTATGATCCCGCATCTAATACGTATTA
TCAACTCCCTGGAACTGTCGTCGCTGGTGGTGCAGTTGCAGGTGCAGTGC
AAACGGTAGGAACCTCAGTCGCAGCTGCCTCCCCATACGCTGGTGCAACC
ATCGCAGCAGGTCAACAAGTCTTAACTTCTCCACAAGTTGGTCAGCGAAC
GTTACAAGCAACTGATATGATCCAAGGACTAGCAGCAGGCTCAACAGTTG
CCTTGGGCGCAGCGTATCCAAGCGAAACATCAACCTTTGGGCCAACTCGA
CATAACGTGATCGGAGCCAGTGCGCAACAACCGATGGCAGGAAACACAGT
CGCCGATCCTCACGTCGTCTATTCTACAGCAACATCTATTTCTGCTGGCG
ATGCTGCTTTGTCAGCGGCTCGTGGTTACCACCCTTATGGAAGATAAGAT
ATTGAacttcaaaactgaaaaaagagaCTTCAATCGTACTTTGATCTGTA
CGTAAAGAAGAAAGCTTTGAAAGACTCGATCTTCACTCATGGACAGcgat
tttgtaaataaaaacttttttaatctattgattgattgatgctTTGTCAG
TTGGTTCTTCGATACGTGATAATCATATTGCTCTTTGGTGACAATTCGGT
TTTataaatgaaaagacattttattGGATTTGTCTACGCCATGCACAATG
GATGTAGATATTTTACGCGATAATTTCATTTGAATGAACAATTTTTAACG
TGAGAACTTTATGGACATGCGCGatatttctctctttttatttgaaagaa
aatttattcaatggaattacaaaatattttgattgtttatccatttctta
tttttttatcgGAATTTTCTTTACTTACTATTGAGTCCACTTCCACATCA
GCTTAGTTTGAGATGTGTAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_284:879845..888775-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056948 ID=TCONS_00056948|Name=TCONS_00056948|organism=Clytia hemisphaerica|type=transcript|length=8931bp|location=Sequence derived from alignment at scaffold_284:879845..888775- (Clytia hemisphaerica)
TACACGTCCATTCTTGTTATATATTCGAAGGATTTTGTTTTAGGAGATTT
CATTTTTAGTGGGATTCATATATACAATACTTGGAGGCCACGGTATCATT
TTCTTATTGTTTTAGTGGGTAAAAGACGATAAATATTCTCATAAACTAAA
AAACCATGGCTGCTCCTATACAACAAATTTCAAATGGCGCTATACCAATT
ATGTCTGGTGTTGCAGGAACTCCAGTTCAACAGCCAGCTGTTGTTTACCA
ACAACAACAACCAATGATTGTCGCAGGTGCTGCTCCGATGGGTTACGCAC
CACGAAAGCCCTACATCAGGAATCCGAATGAGGAGCATTGGTAANTTACG
CACCACGAAAGCCCTACATCAGGAATCCGAATGAGGAACATTGGTAAGGG
AGCTTTTGAAAAATTGACTTTTTAATTTATCCATTATACAGTTATACTTG
AAAAAAAGAGCTCTGGGAAAATAACCATTGTGTCTTCAAAAGACCAACTG
TATTAGTTCCATAGGGAAAAATTCATGGTTGTTGGACTTGCAAATACGTG
TGTCAGTGTACCAATCAAAGGAAATTCGTTTTTACCAATGTTACTTTTTT
CTATATCTAAAGAATTAGTAAACGTTTTAAAATCTGTAAAAAGCTCTCTA
CTCCCAAATAGTTCTAGATTACCAGACAATCTCAATCAAACAGAATCGAC
GATCGAACCAGTCGAATGCAATCGAATCTCAATCGAGCGTCAAAATTCTG
GGTAATATTCGATAGGTTCGATTGTTGTTCAACTGGTTCGATTGTCGTTC
AACTACATTCGATTGTTTGAGTGAAACAAGGCATGTCCTAAATATATTTT
GCGTGATGCGCACCGCTTCCCGTTATTCCTCCTTAACTCTCATATATAGC
TCAAAAGAATCGAATCAACAAGAGGATTTCGAAAAGGGTCAGCTTTTTAA
CAAAGATTAGTCTCTCTAAGGGTCAGGTCCTAATCAAACGCAATCGAACA
TCAATCGAACGCAATCGAATATCAATTGAATCTGAAAATTGTGAGATTCA
ATCGCGTTCGACAATCGAATTTCAATCGGTCGATTGCGTTCGATTTGGTT
CGACTGGTTCGATCGTCGATTCCATTTGATTGAGATCGTCTGGAGATGAA
ACCCTGCAAAAACCATGTTCAATCTTATCGTTTCGTTGGTATTGGAAACC
AAGGAAATTCGCAAAAAATTTATTTCTCCCTTTTTTAGCAAAATCTTTGT
CGGAGGTGTTGGTAAATTGACAAATGATGAATCTCTTAGAGCCTACTTTG
GAAAATTCGGAGAAATTGCAGATAGTGTTATAATGAAAGATAAACATACA
AATGAGCCAAGGTAAGTGTCAGCATAAACATATAAACAACTGGACATCCA
TCTCCTTTCTTGTATTTTTGAAGATAACACTGCTAGCTTCGTTGCCGCCT
CATTAAAATCATAAAACCTAACAATAAATTTTGGTATACCTCTTGGGAAT
ACCTTGGTAAAACCTCAAAACTTCAACAAAAGTCTCTGTTGTTCTACTCT
TCTCAAGTCTTATCTATATCATAACCAAGATAACTGAGGCAAAATCATTG
TCAGCTTGTCAAAATTCTGACTAATATTTTTAAATTTAGACTCAAAAGTA
TGGAATAATTTTAGAGAGTATGGGATTCAAATTATGATAATCTCATGGTA
CAGGCTCTCAACTTTGGCGTACTATTTTTTTCATGTCATAAAAAAATTAT
TAGAGTGACAAAAGGGATGCAAAAGTATACACGCAGTTGATAAAATACTT
ATGCAATGTCAAGCTCTATCAATCCTTTTACCTTAGTAATTCCAATAAAA
TGAAATTGTGACGGAATATTGTAGAATTTTATATATCAATCAGGGCTGCA
AATAAGCATCGGTCATCGGTCAATGTCCGACTGAAAAAGCCATTTGACCG
ACTGAAAATCATTTGTGTCGGTCATGATGTCCGAATGAAAAAAAAACATT
AATTTGAGTTGAAAACAAATCTTTCACACCCCTGTCTCTTTGTCTATTAT
TACTACTCTTTTACTTTCTTTTAGCTTTCAAGAGTGTTTCTAAAGTTTAC
TTTGATTTCATGCGTTTTTATTTTTATCGACTTGCTTTCTTTGTAACTTT
CATCAGTGTTTCTAAGTTCACTTTTTATTGACTTGCTATCTTTGTAAACT
TTCAAGAGTGTTTATAAGTTCACTTTTTATCAACTTGCTTTCTTCGTAAC
TTTCAAGAGTGTCTCTAAGCTCACTTTTATCAACTCGTTATCGTTGTAAC
TTTCAAGGGTCTTTCTAAGTTCACTTATATCGCATTGCTTTCTTCGTAAC
TTTAGAAGTTCCAAGGTCACTTTTACCTACTCTCTTTCTCCATAACTTTC
AAGACTGTATGATTTCAGAAAACTTATAGACTGAATGACCGACAGGATTT
AGAGCTTGACCGACAGAATTTCATCTCAGTCCCGACATGATGTCTGATTG
ACTAGAAATATTTATTTGCAGCCCCGATCAATTTTTTAATACAGTGGGTA
ACAAAGCTCGCTTCAAAGACACAATGGAAGATAGTCGTCCAGTCGTTTAT
ATGTTCAGACAAAAAATTTGAGCCTTGCTAACAGTATCTTATGAAAAACT
TTGTTTTAAAAAACGTTTTAAATTAAAAAAGCAATGGTGAAATGCTGAGT
CAGCAGAAAAGTAAATTGCTGTTTTTGGAAGGAACTTATGCATTGAGCAA
TGATCATCTAAAAAAATTACTTTCCAAAACTCCAAAAAAGAGCAATAATT
GCTGTTTTTATCTCATATACCCCACTGTATATTTTCAGACTGAAGAGAAA
AACCCTTTTCTTTTGTTATTTCATGATATCTTTTACCTGTTCATTAATTT
CACAGAGGGTTTGCATTCGTCACATTCAAAACACCAGAAGCTGTTTCAGC
TGTCATTGAACAAAATAATAAAGGTGGACATACTCTTGATGGAAAAATGG
TAGGTTGTAATGTCTGAAAGAAACTCTACATTATATAATGACAAGAAAAA
AATGACGTTTCTATAAGAGAATCATTCTGTGTTTTTTATACATTTTGGCA
CACCTGCAATATTGCCAATATATTGAAGTAGTTTTGGTTTCATTTTTAAA
ACTTAATTTGGTTGCTTCATACAGAGAAGTAGGATGAAATAGAAAACCAG
CTTCCTTGACTACCCCATGCCTTTGTTTTAGCTTTATTAATAAGGTTAGT
TTGATTAGGAAAAGTTGAAGAAAAGATGGCTTGTCCTAAAAATGGCTGGC
CATAAAAGTGGATTTGCGTTTTACATTTGTGCACCTACCTGCTTTTCAAT
AAGATGTGCGCAATCCCGTGTGAAGTAGCAAATTTTACACCATTTTATTG
CCTAAAAATTCTCGTTGTAATGATATTGATTTGTTTCAATAATATTTGGT
CCAGTTTCGGGGAAAGCAATCATTAGAATTGTTAATGTTAGGATATTGTG
AGCAAGAAAATAGGTATCTTGTGGTCTGAGTGAGGTGTTCCCAAAATATA
AGCCCCTAAAGTTTAAGCCTAATTAGACTCAAACAAAAGACTTCCACCAC
ATCACCTCCCTTAAGGGCAAAGGACCTGGTACATGACGAGCCGTGTCTTC
AAGAAGCTGTTTTTCTATCTCATTGCACTTCTCTGCTTCATATCTTTGAT
ATCTGGGTTGAAAGAAAAATTATAAAAAATTATATTTTGTTTGTATTGAG
CCTTTCACTGACACTGCTGAGATGGATTGAAAATATGTTATTTTGAGTTT
GGAACAGGTTGGAAACATTTGTTTGAGGCTAGGAAGGTCTGGAAGATAAA
AGAGTTCTTTTTTCTTTCCTTTACATAGTTTATTGAAGTACGAAAGTTCC
AGAGAAAATCTGAGGTGAGATCAAGTTTCTGACTTCATTATTGTTGTTAT
TCTTTGAAGGTTGATCCTAAGCCAGCTGTCCCTCAAGGTCCTGGAGTTCA
AAATAAACCCTTGGTAAGTTTTTTAAGTCAGTCGATCTCTGGATCTTTGA
TATTAATGCCCTATCTACTTGATTTTTACTGAATGACACAAGATGAGTCT
TAGACTTTTGTTTATTTATTTTTTGTCTCATTACAGTTTTTGAATATTTT
TCATTTTCAGTATGACCCAGATAAGGCCAACACAACTCTTACTACTGCCA
ATGGTGCTGCACAACTTAACGTAAGAATTAAAAATCTTGGTATCAATATT
GTTACATTTTGCATGCAAGTCAGTTTCAAATTATGTCTAAATCAGCAATG
CCCTCAATTGAAGTTGATAAATGCTTTGCTATGACCACTGGTGTTTGATC
AATAATTTAAATCAAAACTTTTCTTTCTTGAACAGTTTCAATACAAAGGT
CCAATGAAGTGCTCACCAGAAATGAAAGTTTTTGTTGGTGGAATTGGTAT
TGGTACAACAGAGGATGATGTAAAGAAATATTTTGAACAATTTGGAAAGG
TAATTTGAACTTTTTTCTCTTCAAATACTCCTTCAAAATTAAAAAAACAA
GGAATGTTTTGAAAATAAGACATTTAAAAATCTTAATTTCTTATCCTTCA
GGTCCTTGCTGTCGATATGCCTGTTCATCATGTGTATAAATGTCCCAAAG
GTATGTTTATTATTCAGAATTTCGGACTTTATGCCCCTCAAATATCCAAG
TTTACGAAAATCACCATATTTTTTGATCCACACAAAAACAATTAACAATG
CAAAAAAGTTTAACCCACGCAAATAAATTTTTGAACTTCGCAAAAAAAAA
TTTGACCGTCCATAAAAAAATTCTACCCACATGTCCATTCAACCCAAGCA
CCCACTCAACCCACACCCGTCAAATCCATACCAGGGTAGAATAACTGATT
TTAGAGAGGGCTAACTAACTGTGATTTAAAACTTAATCATTTTCCTTTCC
AACAATTTGTTGACTAGGCTATAAAAAAAAAAAAATTCTATCAATTCATT
TTCTGCTACATCTGGTTGTAATCATACTTACAAATTCCTTAAAATTTTGT
TTTGGTATATATGTTTTTGATAAGGGATATGGTTATGAAGTATAAGCTTT
TCTTGGACGGGTAACTGACCTCAACTTGTCCGTGCACAAGATTACTATCA
TCCCTATTACTATTTTCAGCTTTCTATCTGCTTGAGCCAATTTTATTTTA
TATTGATTTATAATTAGTAGAAACCTAGTTGCACACCTTTGCATTTAACT
CTAGACAAAATATATTGACAGAACTCATATATTTTAGATGTTTAAATATT
TACAATTAATGAAAAATAGCCACAGCACAACTTAGCCTGTTTTTTAAGTA
ACCAAAATATTATATTTGAGATCAGAATATTAACATTTTGAATAACATTT
GACATTACTAGAATTTTTGACCTTCAAAATCTAAAAATATATACATCATT
TTATGATTTTATACTTAAAAGTATTTTAACTAAGAACTTAATAGTCCCAT
ATGCCATTAATCAATGTTTTTGAATGTATGAATTTACTATGTCTTCTTTT
TAGCAAAATATTTCTAATTTATGATTACCTAATTAGGCTTTGCATTTGTT
GGATTTGAGACATTTGATGTAGTTGCAGCTGTAACAAAAGATCGATATCA
TCAGATAAATGGAAAAACGGTGTGATATAAAATATTTTAATGTTGTTTTA
CCAATTATTTTTTCAATTCTTCGTAATTTATAATCAATATTTTTAAAAAG
TTTCAGGTATTTTCACTATTTTGACTGACACTGTAACTAATTTTAGTTCA
GCTCTTTTCAGAAATTTTACCACTATTTTTCTGTTTGTTTCTAGCCTTAG
ACTTTAATATTGTTTGAATGTTATTTTGCAATCATTTGTTCAGTATTTTT
GTTTTTCTGAAAAGCTAATTTTTGCTTATTTTTTAGATTTTAAAATTTGC
CTTTTTTCAGTCAGTNTTATATTGATTTATAATTAGTAGAAACCTAGTTG
CACACCTTTGCATTTAACTCTAGACAAAATATATTGACAGAACTCATATA
TTTTAGATGTTTAAATATTTACAATTAATGAAAAATAGCCACAGCACAAC
TTAGCCTGTTTTTTAAGTAACCAAAATATTATATTTGAGATCAGAATATT
AACATTTTGAATAACATTTGACATTACTAGAATTTTTGACCTTCAAAATC
TAAAAATATATACATCATTTTATGATTTTATACTTAAAAGTATTTTAACT
AAGAACTTAATAGTCCCATATGCCATTAATCAATGTTTTTGAATGTATGA
ATTTACTATGTCTTCTTTTTAGCAAAATATTTCTAATTTATGATTACCTA
ATTAGGCTTTGCATTTGTTGGATTTGAGACATTTGATGTAGTTGCAGCTG
TAACAAAAGATCGATATCATCAGATAAATGGAAAAACGGTGTGATATAAA
ATATTTTAATGTTGTTTTACCAATTATTTTTTCAATTCTTCGTAATTTAT
AATCAATATTTTTAAAAAGTTTCAGGTATTTTCACTATTTTGACTGACAC
TGTAACTAATTTTAGTTCAGCTCTTTTCAGAAATTTTACCACTATTTTTC
TGTTTGTTTCTAGCCTTAGACTTTAATATTGTTTGAATGTTATTTTGCAA
TCATTTGTTCAGTATTTTTGTTTTTCTGAAAAGCTAATTTTTGCTTATTT
TCTAGATTTTAAAATTTGCCTTTTTTCAGTCAGTCATTATTCAGTATTAC
TGTTCTAAACTGAATTTTGAGATTGGTTTATTTTGTTGTAGGTCGAAGTA
AAAGGCTCAGATGAGCAGCAAGCACATTTGAACAAAAAGAAGGCTGAAGG
TATGAGTGAGTACCAGAACTTTCTTATTATTTTAATGATTACCTTTCGAA
TGCTCAAATACTGATTCTCGTCTACGGGAAGGGTTTTTTTCAAATGACCT
TCTTGATTTATTTGCGAATTAAATACCTTAAGGAAAGAAATTTTTGTGGA
ACAAGTTTTTGACAAATCCGCGAAATAAGAATATTATCATGATTTAGACA
GGTTTAGAAAATAACCTATAGTATTAGTGTTTTTGGGGCAGAATAAGCCA
TATTTAAACAAAAATTTGTCTCAACCGCAAAATTAAATTCTGTGAAACTT
CTGAATTTTGAGCTGTGAACTGCGAAATTAAATTCCACAAAAATTTTTTT
CCGCAGAGATTTCTTCCCTTAAGGTAACAACAAACAAGGAATTGAAATGA
ATTTATCTTAAATATTTTGCTTTTTTTTCAGCTATCCGGTATGCTTCTGC
TGGAAGAGGTAGAGGAATTGGATCAGGAAATATTGGAACAGTGACAGGAT
ACGGTGCATATGCAAACCTTGGTCAACCATTAATCGTAAACCCTGCTCAA
CATAGTGTACAATATACAGGTAAGAAGTTAGTTAGCAAAACATATTTGCT
ATAAGCCTTAAATATCAACACTGATCACACCTTGGTAAAAGGATTAATGA
ATTATAGACAAAAGTATGTTAATTAGGGTTTAAACTGGTGTAAATAATGT
TTTTTTTTTTTTTCAACCTGATAAAAAAAGAAATAAAATAATTGATTCGA
CAAATCCTTTTGAACCTTCAGTTGCTTTTTCATTACTATTTTGTTTTTTT
CTCAGTTCCTGCTGCAGCAACTGGTGGATATGTGTATGATCCCGCATCTA
ATACGTATTATCAACTCCCTGGAACTGTCGTCGCTGGTAAGACTATCACT
CAAATTTACCAGATGAATGCACGTCAAAATATTTCAAAACCTTATTTTAT
AAAAAATTACTCAATAGTAGGTTTTAAAATAGATCACTCTTTGGTATCTG
GTCAAAAATATAAGCTCGATAAAATCGCGAAATTTAATCCCCGTTAAAGT
TTATCCCATTAAAGTAGTAACAAAATATTTCTGTAATTAACAGGTGGTGC
AGTTGCAGGTGCAGTGCAAACGGTAGGAACCTCAGTCGCAGCTGCCTCCC
CATACGCTGGTGCAACCATCGCAGCAGGTCAACAAGTCTTAACTTCTCCA
CAAGTTGGTCAGCGAACGTTACAAGCAACTGATATGATCCAAGGACTAGC
AGCAGGCTCAACAGTTGGTAAGTGAGTAATCTACGTAAGTCATCTCTTGA
GAATAACTTTTAAAAGTTTGAGTGTCCAAAAGTTCTAAGTAAACATCATA
GATCAATAACAGTACTTTGTATGTATATGATATTATCAATCATATTATCA
TATTTTTAGCCTTGGGCGCAGCGTATCCAAGCGAAACATCAACCTTTGGG
CCAACTCGACATAACGTGATCGGAGCCAGTGCGCAACAACCGATGGCAGG
AAACACAGTCGCCGATCCTCACGTCGTCTATTCTACAGCAACATCTATTT
CTGCTGGCGATGCTGCTTTGTCAGCGGCTCGTGGTTACCACCCTTATGGA
AGATAAGATATTGAACTTCAAAACTGAAAAAAGAGACTTCAATCGTACTT
TGATCTGTACGTAAAGAAGAAAGCTTTGAAAGACTCGATCTTCACTCATG
GACAGCGATTTTGTAAATAAAAACTTTTTTAATCTATTGATTGATTGATG
CTTTGTCAGTTGGTTCTTCGATACGTGATAATCATATTGCTCTTTGGTGA
CAATTCGGTTTTATAAATGAAAAGACATTTTATTGGATTTGTCTACGCCA
TGCACAATGGATGTAGATATTTTACGCGATAATTTCATTTGAATGAACAA
TTTTTAACGTGAGAACTTTATGGACATGCGCGATATTTCTCTCTTTTTAT
TTGAAAGAAAATTTATTCAATGGAATTACAAAATATTTTGATTGTTTATC
CATTTCTTATTTTTTTATCGGAATTTTCTTTACTTACTATTGAGTCCACT
TCCACATCAGCTTAGTTTGAGATGTGTAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035868XLOC_035868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056948-exon-scaffold_284-1575043694:888436..888775TCONS_00056948-exon-scaffold_284-1575043694:888436..888775Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1575043694:887415..887537TCONS_00056948-exon-scaffold_284-1575043694:887415..887537Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1575043694:885777..885870TCONS_00056948-exon-scaffold_284-1575043694:885777..885870Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1575043694:884862..884897TCONS_00056948-exon-scaffold_284-1575043694:884862..884897Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1575043694:884556..884615TCONS_00056948-exon-scaffold_284-1575043694:884556..884615Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1575043694:884277..884390TCONS_00056948-exon-scaffold_284-1575043694:884277..884390Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1575043694:884126..884174TCONS_00056948-exon-scaffold_284-1575043694:884126..884174Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1575043694:883107..883189TCONS_00056948-exon-scaffold_284-1575043694:883107..883189Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1575043694:881927..881984TCONS_00056948-exon-scaffold_284-1575043694:881927..881984Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1575043694:881357..881494TCONS_00056948-exon-scaffold_284-1575043694:881357..881494Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1575043694:881040..881120TCONS_00056948-exon-scaffold_284-1575043694:881040..881120Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1575043694:880659..880832TCONS_00056948-exon-scaffold_284-1575043694:880659..880832Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1575043694:879845..880516TCONS_00056948-exon-scaffold_284-1575043694:879845..880516Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:888436..888775TCONS_00056948-exon-scaffold_284-1510915933:888436..888775Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:887415..887537TCONS_00056948-exon-scaffold_284-1510915933:887415..887537Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:885777..885870TCONS_00056948-exon-scaffold_284-1510915933:885777..885870Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:884862..884897TCONS_00056948-exon-scaffold_284-1510915933:884862..884897Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:884556..884615TCONS_00056948-exon-scaffold_284-1510915933:884556..884615Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:884277..884390TCONS_00056948-exon-scaffold_284-1510915933:884277..884390Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:884126..884174TCONS_00056948-exon-scaffold_284-1510915933:884126..884174Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:883107..883189TCONS_00056948-exon-scaffold_284-1510915933:883107..883189Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:881927..881984TCONS_00056948-exon-scaffold_284-1510915933:881927..881984Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:881357..881494TCONS_00056948-exon-scaffold_284-1510915933:881357..881494Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:881040..881120TCONS_00056948-exon-scaffold_284-1510915933:881040..881120Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:880659..880832TCONS_00056948-exon-scaffold_284-1510915933:880659..880832Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1510915933:879845..880516TCONS_00056948-exon-scaffold_284-1510915933:879845..880516Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:888436..888775TCONS_00056948-exon-scaffold_284-1491911889:888436..888775Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:887415..887537TCONS_00056948-exon-scaffold_284-1491911889:887415..887537Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:885777..885870TCONS_00056948-exon-scaffold_284-1491911889:885777..885870Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:884862..884897TCONS_00056948-exon-scaffold_284-1491911889:884862..884897Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:884556..884615TCONS_00056948-exon-scaffold_284-1491911889:884556..884615Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:884277..884390TCONS_00056948-exon-scaffold_284-1491911889:884277..884390Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:884126..884174TCONS_00056948-exon-scaffold_284-1491911889:884126..884174Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:883107..883189TCONS_00056948-exon-scaffold_284-1491911889:883107..883189Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:881927..881984TCONS_00056948-exon-scaffold_284-1491911889:881927..881984Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:881357..881494TCONS_00056948-exon-scaffold_284-1491911889:881357..881494Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:881040..881120TCONS_00056948-exon-scaffold_284-1491911889:881040..881120Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:880659..880832TCONS_00056948-exon-scaffold_284-1491911889:880659..880832Clytia hemisphaericaexon
TCONS_00056948-exon-scaffold_284-1491911889:879845..880516TCONS_00056948-exon-scaffold_284-1491911889:879845..880516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:879845..888775 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.4144	11.1159	15.3471	14.0079	280.548	227.032	87.5166	103.509	5.95982	1.0256	13.8443	8.13752	4.52834	12.6887	7.18404	7.23306	16.2229	13.5975	1.56227	3.71647	27.6007	29.8024	32.6279	42.1442	51.9399	53.0067	6.92924	21.4777	25.8077	25.3062
Blast
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BLAST of TCONS_00056948 vs. Swiss-Prot (Human)
Match: MSI1H (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.293e-32
Identity = 72/210 (34.29%), Postives = 106/210 (50.48%), Query Frame = 3 
Query:  306 KPYIRNPNEEH--CKIFVGGVGKLTNDESLRAYFGKFGEIADSVIMKDKHTNEPRGFAFVTFKTPEAVSAVIEQNNKGGHTLDGKMFIEVRKFQRKSEYDPDKXXXXXXXXXXXXXXXFQYKGPMKCSPEMKVFVGGIGIGTTEDDVKKYFEQFGKVLAVDMPVHHVYKCPKGFAFVGFETFDVVAAVTKDRYHQINGKTVEVKGSDEQQ 929
            +P + +P+  H  CK+F+GG+   T  E LR YFG+FGE+ + ++M+D  T   RGF FVTF     V  V+ Q+    H LD K       F R+++                         P   +   K+FVGG+ + TT +DVK+YFEQFGKV    +         +GF FV FE+ D+V  V +  +H+IN K VE K +  ++
Sbjct:    7 QPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVAFPRRAQ-------------------------PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
The following BLAST results are available for this feature:
BLAST of TCONS_00056948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSI1H7.293e-3234.29RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
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