TCONS_00056949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056949
Unique NameTCONS_00056949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2105

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056949 ID=TCONS_00056949|Name=TCONS_00056949|organism=Clytia hemisphaerica|type=transcript|length=2105bp
ACACGTCCATTCTTGTTATAATATTCGAATGATTTTGTTTTAGGAGATTT
CATTTNATTTACACGTCCATTCTTGTTATATATTCGAAGGATTTTGTTTT
AGGAGATTTCATTTTTAGTGGGATTCATATATACAATACTTGGAGGCCAC
GGTATCATTTTCTTATTGTTTTAGTGGGTAAAAGACGATAAATATTCTCA
TAAACTAAAAAACCATGGCTGCTCCTATACAACAAATTTCAAATGGCGCT
ATACCAATTATGTCTGGTGTTGCAGGAACTCCAGTTCAACAGCCAGCTGT
TGTttaccaacaacaacaaccaatgATTGTCGCAGGTGCTGCTCCGATGG
GTTACGCACCACGAAAGCCCTACATCAGGAATCCGAATGAGGAGCATTGC
AAAATCTTTGTCGGAGGTGTTGGTAAATTGACAAATGATGAATCTCTTAG
AGCCTACTTTGGAAAATTCGGAGAAATTGCAGATAGTGTTATAATGAAAG
ATAAACATACAAATGAGCCAAGAGGGTTTGCATTCGTCACATTCAAAACA
CCAGAAGCTGTTTCAGCTGTCATTGAACAAAATAATAAAGGTGGACATAC
TCTTGATGGAAAAATGGTTGATCCTAAGCCAGCTGTCCCTCAAGGTCCTG
GAGTTCAAAATAAACCCTTGtatgACCCAGATAAGGCCAACACAACTCTT
ACTACTGCCAATGGTGCTGCACAACTTAACTTTCAATACAAAGGTCCAAT
GAAGTGCTCACCAGAAATGAAAGTTTTTGTTGGTGGAATTGGTATTGGTA
CAACAGAGGATGatgtaaagaaatattttgaacaatttgGAAAGGTCCTT
GCTGTCGATATGCCTGTTCATCATGTGTATAAATGTCCCAAAGGCTTTGC
ATTTGTTGGATTTGAGACATTTGATGTAGTTGCAGCTGTAACAAAAGATC
GATATCATCAGATAAATGGAAAAACGGTCGAAGTAAAAGGCTCAGATGAG
CAGCAAGCACATTTGAACAAAAAGAAGGCTGAAGGTATGACTATCCGGTA
TGCTTCTGCTGGAAGAGGTAGAGGAATTGGATCAGGAAATATTGGAACAG
TGACAGGATACGGTGCATATGCAAACCTTGGTCAACCATTAATCGTAAAC
CCTGCTCAACATAGTGTACAATATACAGtTCCTGCTGCAGCAACTGGTGG
ATATGTGTATGATCCCGCATCTAATACGTATTATCAACTCCCTGGAACTG
TCGTCGCTGGTGGTGCAGTTGCAGGTGCAGTGCAAACGGTAGGAACCTCA
GTCGCAGCTGCCTCCCCATACGCTGGTGCAACCATCGCAGCAGGTCAACA
AGTCTTAACTTCTCCACAAGTTGGTCAGCGAACGTTACAAGCAACTGATA
TGATCCAAGGACTAGCAGCAGGCTCAACAGTTGCCTTGGGCGCAGCGTAT
CCAAGCGAAACATCAACCTTTGGGCCAACTCGACATAACGTGATCGGAGC
CAGTGCGCAACAACCGATGGCAGGAAACACAGTCGCCGATCCTCACGTCG
TCTATTCTACAGCAACATCTATTTCTGCTGGCGATGCTGCTTTGTCAGCG
GCTCGTGGTTACCACCCTTATGGAAGATAAGATATTGAacttcaaaactg
aaaaaagagaCTTCAATCGTACTTTGATCTGTACGTAAAGAAGAAAGCTT
TGAAAGACTCGATCTTCACTCATGGACAGcgattttgtaaataaaaactt
ttttaatctattgattgattgatgctTTGTCAGTTGGTTCTTCGATACGT
GATAATCATATTGCTCTTTGGTGACAATTCGGTTTTataaatgaaaagac
attttattGGATTTGTCTACGCCATGCACAATGGATGTAGATATTTTACG
CGATAATTTCATTTGAATGAACAATTTTTAACGTGAGAACTTTATGGACA
TGCGCGatatttctctctttttatttgaaagaaaatttattcaatggaat
tacaaaatattttgattgtttatccatttcttatttttttatcgGAATTT
TCTTTACTTACTATTGAGTCCACTTCCACATCAGCTTAGTTTGAGATGTG
TAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_284:879845..888834-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056949 ID=TCONS_00056949|Name=TCONS_00056949|organism=Clytia hemisphaerica|type=transcript|length=8990bp|location=Sequence derived from alignment at scaffold_284:879845..888834- (Clytia hemisphaerica)
ACACGTCCATTCTTGTTATAATATTCGAATGATTTTGTTTTAGGAGATTT
CATTTNATTTACACGTCCATTCTTGTTATATATTCGAAGGATTTTGTTTT
AGGAGATTTCATTTTTAGTGGGATTCATATATACAATACTTGGAGGCCAC
GGTATCATTTTCTTATTGTTTTAGTGGGTAAAAGACGATAAATATTCTCA
TAAACTAAAAAACCATGGCTGCTCCTATACAACAAATTTCAAATGGCGCT
ATACCAATTATGTCTGGTGTTGCAGGAACTCCAGTTCAACAGCCAGCTGT
TGTTTACCAACAACAACAACCAATGATTGTCGCAGGTGCTGCTCCGATGG
GTTACGCACCACGAAAGCCCTACATCAGGAATCCGAATGAGGAGCATTGG
TAANTTACGCACCACGAAAGCCCTACATCAGGAATCCGAATGAGGAACAT
TGGTAAGGGAGCTTTTGAAAAATTGACTTTTTAATTTATCCATTATACAG
TTATACTTGAAAAAAAGAGCTCTGGGAAAATAACCATTGTGTCTTCAAAA
GACCAACTGTATTAGTTCCATAGGGAAAAATTCATGGTTGTTGGACTTGC
AAATACGTGTGTCAGTGTACCAATCAAAGGAAATTCGTTTTTACCAATGT
TACTTTTTTCTATATCTAAAGAATTAGTAAACGTTTTAAAATCTGTAAAA
AGCTCTCTACTCCCAAATAGTTCTAGATTACCAGACAATCTCAATCAAAC
AGAATCGACGATCGAACCAGTCGAATGCAATCGAATCTCAATCGAGCGTC
AAAATTCTGGGTAATATTCGATAGGTTCGATTGTTGTTCAACTGGTTCGA
TTGTCGTTCAACTACATTCGATTGTTTGAGTGAAACAAGGCATGTCCTAA
ATATATTTTGCGTGATGCGCACCGCTTCCCGTTATTCCTCCTTAACTCTC
ATATATAGCTCAAAAGAATCGAATCAACAAGAGGATTTCGAAAAGGGTCA
GCTTTTTAACAAAGATTAGTCTCTCTAAGGGTCAGGTCCTAATCAAACGC
AATCGAACATCAATCGAACGCAATCGAATATCAATTGAATCTGAAAATTG
TGAGATTCAATCGCGTTCGACAATCGAATTTCAATCGGTCGATTGCGTTC
GATTTGGTTCGACTGGTTCGATCGTCGATTCCATTTGATTGAGATCGTCT
GGAGATGAAACCCTGCAAAAACCATGTTCAATCTTATCGTTTCGTTGGTA
TTGGAAACCAAGGAAATTCGCAAAAAATTTATTTCTCCCTTTTTTAGCAA
AATCTTTGTCGGAGGTGTTGGTAAATTGACAAATGATGAATCTCTTAGAG
CCTACTTTGGAAAATTCGGAGAAATTGCAGATAGTGTTATAATGAAAGAT
AAACATACAAATGAGCCAAGGTAAGTGTCAGCATAAACATATAAACAACT
GGACATCCATCTCCTTTCTTGTATTTTTGAAGATAACACTGCTAGCTTCG
TTGCCGCCTCATTAAAATCATAAAACCTAACAATAAATTTTGGTATACCT
CTTGGGAATACCTTGGTAAAACCTCAAAACTTCAACAAAAGTCTCTGTTG
TTCTACTCTTCTCAAGTCTTATCTATATCATAACCAAGATAACTGAGGCA
AAATCATTGTCAGCTTGTCAAAATTCTGACTAATATTTTTAAATTTAGAC
TCAAAAGTATGGAATAATTTTAGAGAGTATGGGATTCAAATTATGATAAT
CTCATGGTACAGGCTCTCAACTTTGGCGTACTATTTTTTTCATGTCATAA
AAAAATTATTAGAGTGACAAAAGGGATGCAAAAGTATACACGCAGTTGAT
AAAATACTTATGCAATGTCAAGCTCTATCAATCCTTTTACCTTAGTAATT
CCAATAAAATGAAATTGTGACGGAATATTGTAGAATTTTATATATCAATC
AGGGCTGCAAATAAGCATCGGTCATCGGTCAATGTCCGACTGAAAAAGCC
ATTTGACCGACTGAAAATCATTTGTGTCGGTCATGATGTCCGAATGAAAA
AAAAACATTAATTTGAGTTGAAAACAAATCTTTCACACCCCTGTCTCTTT
GTCTATTATTACTACTCTTTTACTTTCTTTTAGCTTTCAAGAGTGTTTCT
AAAGTTTACTTTGATTTCATGCGTTTTTATTTTTATCGACTTGCTTTCTT
TGTAACTTTCATCAGTGTTTCTAAGTTCACTTTTTATTGACTTGCTATCT
TTGTAAACTTTCAAGAGTGTTTATAAGTTCACTTTTTATCAACTTGCTTT
CTTCGTAACTTTCAAGAGTGTCTCTAAGCTCACTTTTATCAACTCGTTAT
CGTTGTAACTTTCAAGGGTCTTTCTAAGTTCACTTATATCGCATTGCTTT
CTTCGTAACTTTAGAAGTTCCAAGGTCACTTTTACCTACTCTCTTTCTCC
ATAACTTTCAAGACTGTATGATTTCAGAAAACTTATAGACTGAATGACCG
ACAGGATTTAGAGCTTGACCGACAGAATTTCATCTCAGTCCCGACATGAT
GTCTGATTGACTAGAAATATTTATTTGCAGCCCCGATCAATTTTTTAATA
CAGTGGGTAACAAAGCTCGCTTCAAAGACACAATGGAAGATAGTCGTCCA
GTCGTTTATATGTTCAGACAAAAAATTTGAGCCTTGCTAACAGTATCTTA
TGAAAAACTTTGTTTTAAAAAACGTTTTAAATTAAAAAAGCAATGGTGAA
ATGCTGAGTCAGCAGAAAAGTAAATTGCTGTTTTTGGAAGGAACTTATGC
ATTGAGCAATGATCATCTAAAAAAATTACTTTCCAAAACTCCAAAAAAGA
GCAATAATTGCTGTTTTTATCTCATATACCCCACTGTATATTTTCAGACT
GAAGAGAAAAACCCTTTTCTTTTGTTATTTCATGATATCTTTTACCTGTT
CATTAATTTCACAGAGGGTTTGCATTCGTCACATTCAAAACACCAGAAGC
TGTTTCAGCTGTCATTGAACAAAATAATAAAGGTGGACATACTCTTGATG
GAAAAATGGTAGGTTGTAATGTCTGAAAGAAACTCTACATTATATAATGA
CAAGAAAAAAATGACGTTTCTATAAGAGAATCATTCTGTGTTTTTTATAC
ATTTTGGCACACCTGCAATATTGCCAATATATTGAAGTAGTTTTGGTTTC
ATTTTTAAAACTTAATTTGGTTGCTTCATACAGAGAAGTAGGATGAAATA
GAAAACCAGCTTCCTTGACTACCCCATGCCTTTGTTTTAGCTTTATTAAT
AAGGTTAGTTTGATTAGGAAAAGTTGAAGAAAAGATGGCTTGTCCTAAAA
ATGGCTGGCCATAAAAGTGGATTTGCGTTTTACATTTGTGCACCTACCTG
CTTTTCAATAAGATGTGCGCAATCCCGTGTGAAGTAGCAAATTTTACACC
ATTTTATTGCCTAAAAATTCTCGTTGTAATGATATTGATTTGTTTCAATA
ATATTTGGTCCAGTTTCGGGGAAAGCAATCATTAGAATTGTTAATGTTAG
GATATTGTGAGCAAGAAAATAGGTATCTTGTGGTCTGAGTGAGGTGTTCC
CAAAATATAAGCCCCTAAAGTTTAAGCCTAATTAGACTCAAACAAAAGAC
TTCCACCACATCACCTCCCTTAAGGGCAAAGGACCTGGTACATGACGAGC
CGTGTCTTCAAGAAGCTGTTTTTCTATCTCATTGCACTTCTCTGCTTCAT
ATCTTTGATATCTGGGTTGAAAGAAAAATTATAAAAAATTATATTTTGTT
TGTATTGAGCCTTTCACTGACACTGCTGAGATGGATTGAAAATATGTTAT
TTTGAGTTTGGAACAGGTTGGAAACATTTGTTTGAGGCTAGGAAGGTCTG
GAAGATAAAAGAGTTCTTTTTTCTTTCCTTTACATAGTTTATTGAAGTAC
GAAAGTTCCAGAGAAAATCTGAGGTGAGATCAAGTTTCTGACTTCATTAT
TGTTGTTATTCTTTGAAGGTTGATCCTAAGCCAGCTGTCCCTCAAGGTCC
TGGAGTTCAAAATAAACCCTTGGTAAGTTTTTTAAGTCAGTCGATCTCTG
GATCTTTGATATTAATGCCCTATCTACTTGATTTTTACTGAATGACACAA
GATGAGTCTTAGACTTTTGTTTATTTATTTTTTGTCTCATTACAGTTTTT
GAATATTTTTCATTTTCAGTATGACCCAGATAAGGCCAACACAACTCTTA
CTACTGCCAATGGTGCTGCACAACTTAACGTAAGAATTAAAAATCTTGGT
ATCAATATTGTTACATTTTGCATGCAAGTCAGTTTCAAATTATGTCTAAA
TCAGCAATGCCCTCAATTGAAGTTGATAAATGCTTTGCTATGACCACTGG
TGTTTGATCAATAATTTAAATCAAAACTTTTCTTTCTTGAACAGTTTCAA
TACAAAGGTCCAATGAAGTGCTCACCAGAAATGAAAGTTTTTGTTGGTGG
AATTGGTATTGGTACAACAGAGGATGATGTAAAGAAATATTTTGAACAAT
TTGGAAAGGTAATTTGAACTTTTTTCTCTTCAAATACTCCTTCAAAATTA
AAAAAACAAGGAATGTTTTGAAAATAAGACATTTAAAAATCTTAATTTCT
TATCCTTCAGGTCCTTGCTGTCGATATGCCTGTTCATCATGTGTATAAAT
GTCCCAAAGGTATGTTTATTATTCAGAATTTCGGACTTTATGCCCCTCAA
ATATCCAAGTTTACGAAAATCACCATATTTTTTGATCCACACAAAAACAA
TTAACAATGCAAAAAAGTTTAACCCACGCAAATAAATTTTTGAACTTCGC
AAAAAAAAATTTGACCGTCCATAAAAAAATTCTACCCACATGTCCATTCA
ACCCAAGCACCCACTCAACCCACACCCGTCAAATCCATACCAGGGTAGAA
TAACTGATTTTAGAGAGGGCTAACTAACTGTGATTTAAAACTTAATCATT
TTCCTTTCCAACAATTTGTTGACTAGGCTATAAAAAAAAAAAAATTCTAT
CAATTCATTTTCTGCTACATCTGGTTGTAATCATACTTACAAATTCCTTA
AAATTTTGTTTTGGTATATATGTTTTTGATAAGGGATATGGTTATGAAGT
ATAAGCTTTTCTTGGACGGGTAACTGACCTCAACTTGTCCGTGCACAAGA
TTACTATCATCCCTATTACTATTTTCAGCTTTCTATCTGCTTGAGCCAAT
TTTATTTTATATTGATTTATAATTAGTAGAAACCTAGTTGCACACCTTTG
CATTTAACTCTAGACAAAATATATTGACAGAACTCATATATTTTAGATGT
TTAAATATTTACAATTAATGAAAAATAGCCACAGCACAACTTAGCCTGTT
TTTTAAGTAACCAAAATATTATATTTGAGATCAGAATATTAACATTTTGA
ATAACATTTGACATTACTAGAATTTTTGACCTTCAAAATCTAAAAATATA
TACATCATTTTATGATTTTATACTTAAAAGTATTTTAACTAAGAACTTAA
TAGTCCCATATGCCATTAATCAATGTTTTTGAATGTATGAATTTACTATG
TCTTCTTTTTAGCAAAATATTTCTAATTTATGATTACCTAATTAGGCTTT
GCATTTGTTGGATTTGAGACATTTGATGTAGTTGCAGCTGTAACAAAAGA
TCGATATCATCAGATAAATGGAAAAACGGTGTGATATAAAATATTTTAAT
GTTGTTTTACCAATTATTTTTTCAATTCTTCGTAATTTATAATCAATATT
TTTAAAAAGTTTCAGGTATTTTCACTATTTTGACTGACACTGTAACTAAT
TTTAGTTCAGCTCTTTTCAGAAATTTTACCACTATTTTTCTGTTTGTTTC
TAGCCTTAGACTTTAATATTGTTTGAATGTTATTTTGCAATCATTTGTTC
AGTATTTTTGTTTTTCTGAAAAGCTAATTTTTGCTTATTTTTTAGATTTT
AAAATTTGCCTTTTTTCAGTCAGTNTTATATTGATTTATAATTAGTAGAA
ACCTAGTTGCACACCTTTGCATTTAACTCTAGACAAAATATATTGACAGA
ACTCATATATTTTAGATGTTTAAATATTTACAATTAATGAAAAATAGCCA
CAGCACAACTTAGCCTGTTTTTTAAGTAACCAAAATATTATATTTGAGAT
CAGAATATTAACATTTTGAATAACATTTGACATTACTAGAATTTTTGACC
TTCAAAATCTAAAAATATATACATCATTTTATGATTTTATACTTAAAAGT
ATTTTAACTAAGAACTTAATAGTCCCATATGCCATTAATCAATGTTTTTG
AATGTATGAATTTACTATGTCTTCTTTTTAGCAAAATATTTCTAATTTAT
GATTACCTAATTAGGCTTTGCATTTGTTGGATTTGAGACATTTGATGTAG
TTGCAGCTGTAACAAAAGATCGATATCATCAGATAAATGGAAAAACGGTG
TGATATAAAATATTTTAATGTTGTTTTACCAATTATTTTTTCAATTCTTC
GTAATTTATAATCAATATTTTTAAAAAGTTTCAGGTATTTTCACTATTTT
GACTGACACTGTAACTAATTTTAGTTCAGCTCTTTTCAGAAATTTTACCA
CTATTTTTCTGTTTGTTTCTAGCCTTAGACTTTAATATTGTTTGAATGTT
ATTTTGCAATCATTTGTTCAGTATTTTTGTTTTTCTGAAAAGCTAATTTT
TGCTTATTTTCTAGATTTTAAAATTTGCCTTTTTTCAGTCAGTCATTATT
CAGTATTACTGTTCTAAACTGAATTTTGAGATTGGTTTATTTTGTTGTAG
GTCGAAGTAAAAGGCTCAGATGAGCAGCAAGCACATTTGAACAAAAAGAA
GGCTGAAGGTATGAGTGAGTACCAGAACTTTCTTATTATTTTAATGATTA
CCTTTCGAATGCTCAAATACTGATTCTCGTCTACGGGAAGGGTTTTTTTC
AAATGACCTTCTTGATTTATTTGCGAATTAAATACCTTAAGGAAAGAAAT
TTTTGTGGAACAAGTTTTTGACAAATCCGCGAAATAAGAATATTATCATG
ATTTAGACAGGTTTAGAAAATAACCTATAGTATTAGTGTTTTTGGGGCAG
AATAAGCCATATTTAAACAAAAATTTGTCTCAACCGCAAAATTAAATTCT
GTGAAACTTCTGAATTTTGAGCTGTGAACTGCGAAATTAAATTCCACAAA
AATTTTTTTCCGCAGAGATTTCTTCCCTTAAGGTAACAACAAACAAGGAA
TTGAAATGAATTTATCTTAAATATTTTGCTTTTTTTTCAGCTATCCGGTA
TGCTTCTGCTGGAAGAGGTAGAGGAATTGGATCAGGAAATATTGGAACAG
TGACAGGATACGGTGCATATGCAAACCTTGGTCAACCATTAATCGTAAAC
CCTGCTCAACATAGTGTACAATATACAGGTAAGAAGTTAGTTAGCAAAAC
ATATTTGCTATAAGCCTTAAATATCAACACTGATCACACCTTGGTAAAAG
GATTAATGAATTATAGACAAAAGTATGTTAATTAGGGTTTAAACTGGTGT
AAATAATGTTTTTTTTTTTTTTCAACCTGATAAAAAAAGAAATAAAATAA
TTGATTCGACAAATCCTTTTGAACCTTCAGTTGCTTTTTCATTACTATTT
TGTTTTTTTCTCAGTTCCTGCTGCAGCAACTGGTGGATATGTGTATGATC
CCGCATCTAATACGTATTATCAACTCCCTGGAACTGTCGTCGCTGGTAAG
ACTATCACTCAAATTTACCAGATGAATGCACGTCAAAATATTTCAAAACC
TTATTTTATAAAAAATTACTCAATAGTAGGTTTTAAAATAGATCACTCTT
TGGTATCTGGTCAAAAATATAAGCTCGATAAAATCGCGAAATTTAATCCC
CGTTAAAGTTTATCCCATTAAAGTAGTAACAAAATATTTCTGTAATTAAC
AGGTGGTGCAGTTGCAGGTGCAGTGCAAACGGTAGGAACCTCAGTCGCAG
CTGCCTCCCCATACGCTGGTGCAACCATCGCAGCAGGTCAACAAGTCTTA
ACTTCTCCACAAGTTGGTCAGCGAACGTTACAAGCAACTGATATGATCCA
AGGACTAGCAGCAGGCTCAACAGTTGGTAAGTGAGTAATCTACGTAAGTC
ATCTCTTGAGAATAACTTTTAAAAGTTTGAGTGTCCAAAAGTTCTAAGTA
AACATCATAGATCAATAACAGTACTTTGTATGTATATGATATTATCAATC
ATATTATCATATTTTTAGCCTTGGGCGCAGCGTATCCAAGCGAAACATCA
ACCTTTGGGCCAACTCGACATAACGTGATCGGAGCCAGTGCGCAACAACC
GATGGCAGGAAACACAGTCGCCGATCCTCACGTCGTCTATTCTACAGCAA
CATCTATTTCTGCTGGCGATGCTGCTTTGTCAGCGGCTCGTGGTTACCAC
CCTTATGGAAGATAAGATATTGAACTTCAAAACTGAAAAAAGAGACTTCA
ATCGTACTTTGATCTGTACGTAAAGAAGAAAGCTTTGAAAGACTCGATCT
TCACTCATGGACAGCGATTTTGTAAATAAAAACTTTTTTAATCTATTGAT
TGATTGATGCTTTGTCAGTTGGTTCTTCGATACGTGATAATCATATTGCT
CTTTGGTGACAATTCGGTTTTATAAATGAAAAGACATTTTATTGGATTTG
TCTACGCCATGCACAATGGATGTAGATATTTTACGCGATAATTTCATTTG
AATGAACAATTTTTAACGTGAGAACTTTATGGACATGCGCGATATTTCTC
TCTTTTTATTTGAAAGAAAATTTATTCAATGGAATTACAAAATATTTTGA
TTGTTTATCCATTTCTTATTTTTTTATCGGAATTTTCTTTACTTACTATT
GAGTCCACTTCCACATCAGCTTAGTTTGAGATGTGTAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035868XLOC_035868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056949-exon-scaffold_284-1575043694:888436..888834TCONS_00056949-exon-scaffold_284-1575043694:888436..888834Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1575043694:887415..887537TCONS_00056949-exon-scaffold_284-1575043694:887415..887537Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1575043694:885777..885870TCONS_00056949-exon-scaffold_284-1575043694:885777..885870Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1575043694:884763..884816TCONS_00056949-exon-scaffold_284-1575043694:884763..884816Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1575043694:884556..884615TCONS_00056949-exon-scaffold_284-1575043694:884556..884615Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1575043694:884277..884390TCONS_00056949-exon-scaffold_284-1575043694:884277..884390Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1575043694:884126..884174TCONS_00056949-exon-scaffold_284-1575043694:884126..884174Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1575043694:882338..882420TCONS_00056949-exon-scaffold_284-1575043694:882338..882420Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1575043694:881921..881984TCONS_00056949-exon-scaffold_284-1575043694:881921..881984Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1575043694:881357..881494TCONS_00056949-exon-scaffold_284-1575043694:881357..881494Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1575043694:881040..881120TCONS_00056949-exon-scaffold_284-1575043694:881040..881120Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1575043694:880659..880832TCONS_00056949-exon-scaffold_284-1575043694:880659..880832Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1575043694:879845..880516TCONS_00056949-exon-scaffold_284-1575043694:879845..880516Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:888436..888834TCONS_00056949-exon-scaffold_284-1510915933:888436..888834Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:887415..887537TCONS_00056949-exon-scaffold_284-1510915933:887415..887537Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:885777..885870TCONS_00056949-exon-scaffold_284-1510915933:885777..885870Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:884763..884816TCONS_00056949-exon-scaffold_284-1510915933:884763..884816Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:884556..884615TCONS_00056949-exon-scaffold_284-1510915933:884556..884615Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:884277..884390TCONS_00056949-exon-scaffold_284-1510915933:884277..884390Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:884126..884174TCONS_00056949-exon-scaffold_284-1510915933:884126..884174Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:882338..882420TCONS_00056949-exon-scaffold_284-1510915933:882338..882420Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:881921..881984TCONS_00056949-exon-scaffold_284-1510915933:881921..881984Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:881357..881494TCONS_00056949-exon-scaffold_284-1510915933:881357..881494Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:881040..881120TCONS_00056949-exon-scaffold_284-1510915933:881040..881120Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:880659..880832TCONS_00056949-exon-scaffold_284-1510915933:880659..880832Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1510915933:879845..880516TCONS_00056949-exon-scaffold_284-1510915933:879845..880516Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:888436..888834TCONS_00056949-exon-scaffold_284-1491911889:888436..888834Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:887415..887537TCONS_00056949-exon-scaffold_284-1491911889:887415..887537Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:885777..885870TCONS_00056949-exon-scaffold_284-1491911889:885777..885870Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:884763..884816TCONS_00056949-exon-scaffold_284-1491911889:884763..884816Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:884556..884615TCONS_00056949-exon-scaffold_284-1491911889:884556..884615Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:884277..884390TCONS_00056949-exon-scaffold_284-1491911889:884277..884390Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:884126..884174TCONS_00056949-exon-scaffold_284-1491911889:884126..884174Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:882338..882420TCONS_00056949-exon-scaffold_284-1491911889:882338..882420Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:881921..881984TCONS_00056949-exon-scaffold_284-1491911889:881921..881984Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:881357..881494TCONS_00056949-exon-scaffold_284-1491911889:881357..881494Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:881040..881120TCONS_00056949-exon-scaffold_284-1491911889:881040..881120Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:880659..880832TCONS_00056949-exon-scaffold_284-1491911889:880659..880832Clytia hemisphaericaexon
TCONS_00056949-exon-scaffold_284-1491911889:879845..880516TCONS_00056949-exon-scaffold_284-1491911889:879845..880516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:879845..888834 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.73448	0.34682	3.58235e-10	93.8212	54.0759	15.8661	34.6904	0	0	0	0	5.33578e-06	2.489e-10	0	9.70985e-07	5.78125e-09	5.16851e-06	0.0999023	0	0.00223969	9.98757e-05	0.075626	0.0195714	1.82491	13.9167	0.0266671	2.69854	7.60957e-05	0.114523
Blast
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BLAST of TCONS_00056949 vs. Swiss-Prot (Human)
Match: MSI1H (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.289e-33
Identity = 78/233 (33.48%), Postives = 113/233 (48.50%), Query Frame = 2 
Query:  365 KPYIRNPNEEH--CKIFVGGVGKLTNDESLRAYFGKFGEIADSVIMKDKHTNEPRGFAFVTFKTPEAVSAVIEQNNKGGHTLDGKMVDPKPAVPQGPGVQNKPLYDPDKXXXXXXXXXXXXXXXFQYKGPMKCSPEM-----KVFVGGIGIGTTEDDVKKYFEQFGKVLAVDMPVHHVYKCPKGFAFVGFETFDVVAAVTKDRYHQINGKTVEVKGSDEQQAHLNKKKAEGMT 1042
            +P + +P+  H  CK+F+GG+   T  E LR YFG+FGE+ + ++M+D  T   RGF FVTF     V  V+ Q+    H LD K +DPK A P+                                    +  P+M     K+FVGG+ + TT +DVK+YFEQFGKV    +         +GF FV FE+ D+V  V +  +H+IN K VE K +  ++       A G +
Sbjct:    7 QPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVAFPR------------------------------------RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200
The following BLAST results are available for this feature:
BLAST of TCONS_00056949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSI1H1.289e-3333.48RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
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