TCONS_00056953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056953
Unique NameTCONS_00056953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056953 ID=TCONS_00056953|Name=TCONS_00056953|organism=Clytia hemisphaerica|type=transcript|length=1952bp
AAGCTTTCACATGGAATGATTTCGGCGTGGGTAAAAGACGATAAATATTC
TCATAAACTAAAAAACCATGGCTGCTCCTATACAACAAATTTCAAATGGC
GCTATACCAATTATGTCTGGTGTTGCAGGAACTCCAGTTCAACAGCCAGC
TGTTGTttaccaacaacaacaaccaatgATTGTCGCAGGTGCTGCTCCGA
TGGGTTACGCACCACGAAAGCCCTACATCAGGAATCCGAATGAGGAGCAT
TGCAAAATCTTTGTCGGAGGTGTTGGTAAATTGACAAATGATGAATCTCT
TAGAGCCTACTTTGGAAAATTCGGAGAAATTGCAGATAGTGTTATAATGA
AAGATAAACATACAAATGAGCCAAGAGGGTTTGCATTCGTCACATTCAAA
ACACCAGAAGCTGTTTCAGCTGTCATTGAACAAAATAATAAAGGTGGACA
TACTCTTGATGGAAAAATGGTTGATCCTAAGCCAGCTGTCCCTCAAGGTC
CTGGAGTTCAAAATAAACCCTTGtatgACCCAGATAAGGCCAACACAACT
CTTACTACTGCCAATGGTGCTGCACAACTTAACTTTCAATACAAAGGTCC
AATGAAGTGCTCACCAGAAATGAAAGTTTTTGTTGGTGGAATTGGTATTG
GTACAACAGAGGATGatgtaaagaaatattttgaacaatttgGAAAGGTC
CTTGCTGTCGATATGCCTGTTCATCATGTGTATAAATGTCCCAAAGGCTT
TGCATTTGTTGGATTTGAGACATTTGATGTAGTTGCAGCTGTAACAAAAG
ATCGATATCATCAGATAAATGGAAAAACGGTCGAAGTAAAAGGCTCAGAT
GAGCAGCAAGCACATTTGAACAAAAAGAAGGCTGAAGCTATCCGGTATGC
TTCTGCTGGAAGAGGTAGAGGAATTGGATCAGGAAATATTGGAACAGTGA
CAGGATACGGTGCATATGCAAACCTTGGTCAACCATTAATCGTAAACCCT
GCTCAACATAGTGTACAATATACAGtTCCTGCTGCAGCAACTGGTGGATA
TGTGTATGATCCCGCATCTAATACGTATTATCAACTCCCTGGAACTGTCG
TCGCTGGTGGTGCAGTTGCAGGTGCAGTGCAAACGGTAGGAACCTCAGTC
GCAGCTGCCTCCCCATACGCTGGTGCAACCATCGCAGCAGGTCAACAAGT
CTTAACTTCTCCACAAGTTGGTCAGCGAACGTTACAAGCAACTGATATGA
TCCAAGGACTAGCAGCAGGCTCAACAGTTGCCTTGGGCGCAGCGTATCCA
AGCGAAACATCAACCTTTGGGCCAACTCGACATAACGTGATCGGAGCCAG
TGCGCAACAACCGATGGCAGGAAACACAGTCGCCGATCCTCACGTCGTCT
ATTCTACAGCAACATCTATTTCTGCTGGCGATGCTGCTTTGTCAGCGGCT
CGTGGTTACCACCCTTATGGAAGATAAGATATTGAacttcaaaactgaaa
aaagagaCTTCAATCGTACTTTGATCTGTACGTAAAGAAGAAAGCTTTGA
AAGACTCGATCTTCACTCATGGACAGcgattttgtaaataaaaacttttt
taatctattgattgattgatgctTTGTCAGTTGGTTCTTCGATACGTGAT
AATCATATTGCTCTTTGGTGACAATTCGGTTTTataaatgaaaagacatt
ttattGGATTTGTCTACGCCATGCACAATGGATGTAGATATTTTACGCGA
TAATTTCATTTGAATGAACAATTTTTAACGTGAGAACTTTATGGACATGC
GCGatatttctctctttttatttgaaagaaaatttattcaatggaattac
aaaatattttgattgtttatccatttcttatttttttatcgGAATTTTCT
TTACTTACTATTGAGTCCACTTCCACATCAGCTTAGTTTGAGATGTGTAG
GG
Run BLAST on NCBI

transcript from alignment at scaffold_284:879845..888875-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056953 ID=TCONS_00056953|Name=TCONS_00056953|organism=Clytia hemisphaerica|type=transcript|length=9031bp|location=Sequence derived from alignment at scaffold_284:879845..888875- (Clytia hemisphaerica)
AAGCTTTCACATGGAATGATTTCGGCGGTAGAATCGTTTTTACACGTCCA
TTCTTGTTATAATATTCGAATGATTTTGTTTTAGGAGATTTCATTTNATT
TACACGTCCATTCTTGTTATATATTCGAAGGATTTTGTTTTAGGAGATTT
CATTTTTAGTGGGATTCATATATACAATACTTGGAGGCCACGGTATCATT
TTCTTATTGTTTTAGTGGGTAAAAGACGATAAATATTCTCATAAACTAAA
AAACCATGGCTGCTCCTATACAACAAATTTCAAATGGCGCTATACCAATT
ATGTCTGGTGTTGCAGGAACTCCAGTTCAACAGCCAGCTGTTGTTTACCA
ACAACAACAACCAATGATTGTCGCAGGTGCTGCTCCGATGGGTTACGCAC
CACGAAAGCCCTACATCAGGAATCCGAATGAGGAGCATTGGTAANTTACG
CACCACGAAAGCCCTACATCAGGAATCCGAATGAGGAACATTGGTAAGGG
AGCTTTTGAAAAATTGACTTTTTAATTTATCCATTATACAGTTATACTTG
AAAAAAAGAGCTCTGGGAAAATAACCATTGTGTCTTCAAAAGACCAACTG
TATTAGTTCCATAGGGAAAAATTCATGGTTGTTGGACTTGCAAATACGTG
TGTCAGTGTACCAATCAAAGGAAATTCGTTTTTACCAATGTTACTTTTTT
CTATATCTAAAGAATTAGTAAACGTTTTAAAATCTGTAAAAAGCTCTCTA
CTCCCAAATAGTTCTAGATTACCAGACAATCTCAATCAAACAGAATCGAC
GATCGAACCAGTCGAATGCAATCGAATCTCAATCGAGCGTCAAAATTCTG
GGTAATATTCGATAGGTTCGATTGTTGTTCAACTGGTTCGATTGTCGTTC
AACTACATTCGATTGTTTGAGTGAAACAAGGCATGTCCTAAATATATTTT
GCGTGATGCGCACCGCTTCCCGTTATTCCTCCTTAACTCTCATATATAGC
TCAAAAGAATCGAATCAACAAGAGGATTTCGAAAAGGGTCAGCTTTTTAA
CAAAGATTAGTCTCTCTAAGGGTCAGGTCCTAATCAAACGCAATCGAACA
TCAATCGAACGCAATCGAATATCAATTGAATCTGAAAATTGTGAGATTCA
ATCGCGTTCGACAATCGAATTTCAATCGGTCGATTGCGTTCGATTTGGTT
CGACTGGTTCGATCGTCGATTCCATTTGATTGAGATCGTCTGGAGATGAA
ACCCTGCAAAAACCATGTTCAATCTTATCGTTTCGTTGGTATTGGAAACC
AAGGAAATTCGCAAAAAATTTATTTCTCCCTTTTTTAGCAAAATCTTTGT
CGGAGGTGTTGGTAAATTGACAAATGATGAATCTCTTAGAGCCTACTTTG
GAAAATTCGGAGAAATTGCAGATAGTGTTATAATGAAAGATAAACATACA
AATGAGCCAAGGTAAGTGTCAGCATAAACATATAAACAACTGGACATCCA
TCTCCTTTCTTGTATTTTTGAAGATAACACTGCTAGCTTCGTTGCCGCCT
CATTAAAATCATAAAACCTAACAATAAATTTTGGTATACCTCTTGGGAAT
ACCTTGGTAAAACCTCAAAACTTCAACAAAAGTCTCTGTTGTTCTACTCT
TCTCAAGTCTTATCTATATCATAACCAAGATAACTGAGGCAAAATCATTG
TCAGCTTGTCAAAATTCTGACTAATATTTTTAAATTTAGACTCAAAAGTA
TGGAATAATTTTAGAGAGTATGGGATTCAAATTATGATAATCTCATGGTA
CAGGCTCTCAACTTTGGCGTACTATTTTTTTCATGTCATAAAAAAATTAT
TAGAGTGACAAAAGGGATGCAAAAGTATACACGCAGTTGATAAAATACTT
ATGCAATGTCAAGCTCTATCAATCCTTTTACCTTAGTAATTCCAATAAAA
TGAAATTGTGACGGAATATTGTAGAATTTTATATATCAATCAGGGCTGCA
AATAAGCATCGGTCATCGGTCAATGTCCGACTGAAAAAGCCATTTGACCG
ACTGAAAATCATTTGTGTCGGTCATGATGTCCGAATGAAAAAAAAACATT
AATTTGAGTTGAAAACAAATCTTTCACACCCCTGTCTCTTTGTCTATTAT
TACTACTCTTTTACTTTCTTTTAGCTTTCAAGAGTGTTTCTAAAGTTTAC
TTTGATTTCATGCGTTTTTATTTTTATCGACTTGCTTTCTTTGTAACTTT
CATCAGTGTTTCTAAGTTCACTTTTTATTGACTTGCTATCTTTGTAAACT
TTCAAGAGTGTTTATAAGTTCACTTTTTATCAACTTGCTTTCTTCGTAAC
TTTCAAGAGTGTCTCTAAGCTCACTTTTATCAACTCGTTATCGTTGTAAC
TTTCAAGGGTCTTTCTAAGTTCACTTATATCGCATTGCTTTCTTCGTAAC
TTTAGAAGTTCCAAGGTCACTTTTACCTACTCTCTTTCTCCATAACTTTC
AAGACTGTATGATTTCAGAAAACTTATAGACTGAATGACCGACAGGATTT
AGAGCTTGACCGACAGAATTTCATCTCAGTCCCGACATGATGTCTGATTG
ACTAGAAATATTTATTTGCAGCCCCGATCAATTTTTTAATACAGTGGGTA
ACAAAGCTCGCTTCAAAGACACAATGGAAGATAGTCGTCCAGTCGTTTAT
ATGTTCAGACAAAAAATTTGAGCCTTGCTAACAGTATCTTATGAAAAACT
TTGTTTTAAAAAACGTTTTAAATTAAAAAAGCAATGGTGAAATGCTGAGT
CAGCAGAAAAGTAAATTGCTGTTTTTGGAAGGAACTTATGCATTGAGCAA
TGATCATCTAAAAAAATTACTTTCCAAAACTCCAAAAAAGAGCAATAATT
GCTGTTTTTATCTCATATACCCCACTGTATATTTTCAGACTGAAGAGAAA
AACCCTTTTCTTTTGTTATTTCATGATATCTTTTACCTGTTCATTAATTT
CACAGAGGGTTTGCATTCGTCACATTCAAAACACCAGAAGCTGTTTCAGC
TGTCATTGAACAAAATAATAAAGGTGGACATACTCTTGATGGAAAAATGG
TAGGTTGTAATGTCTGAAAGAAACTCTACATTATATAATGACAAGAAAAA
AATGACGTTTCTATAAGAGAATCATTCTGTGTTTTTTATACATTTTGGCA
CACCTGCAATATTGCCAATATATTGAAGTAGTTTTGGTTTCATTTTTAAA
ACTTAATTTGGTTGCTTCATACAGAGAAGTAGGATGAAATAGAAAACCAG
CTTCCTTGACTACCCCATGCCTTTGTTTTAGCTTTATTAATAAGGTTAGT
TTGATTAGGAAAAGTTGAAGAAAAGATGGCTTGTCCTAAAAATGGCTGGC
CATAAAAGTGGATTTGCGTTTTACATTTGTGCACCTACCTGCTTTTCAAT
AAGATGTGCGCAATCCCGTGTGAAGTAGCAAATTTTACACCATTTTATTG
CCTAAAAATTCTCGTTGTAATGATATTGATTTGTTTCAATAATATTTGGT
CCAGTTTCGGGGAAAGCAATCATTAGAATTGTTAATGTTAGGATATTGTG
AGCAAGAAAATAGGTATCTTGTGGTCTGAGTGAGGTGTTCCCAAAATATA
AGCCCCTAAAGTTTAAGCCTAATTAGACTCAAACAAAAGACTTCCACCAC
ATCACCTCCCTTAAGGGCAAAGGACCTGGTACATGACGAGCCGTGTCTTC
AAGAAGCTGTTTTTCTATCTCATTGCACTTCTCTGCTTCATATCTTTGAT
ATCTGGGTTGAAAGAAAAATTATAAAAAATTATATTTTGTTTGTATTGAG
CCTTTCACTGACACTGCTGAGATGGATTGAAAATATGTTATTTTGAGTTT
GGAACAGGTTGGAAACATTTGTTTGAGGCTAGGAAGGTCTGGAAGATAAA
AGAGTTCTTTTTTCTTTCCTTTACATAGTTTATTGAAGTACGAAAGTTCC
AGAGAAAATCTGAGGTGAGATCAAGTTTCTGACTTCATTATTGTTGTTAT
TCTTTGAAGGTTGATCCTAAGCCAGCTGTCCCTCAAGGTCCTGGAGTTCA
AAATAAACCCTTGGTAAGTTTTTTAAGTCAGTCGATCTCTGGATCTTTGA
TATTAATGCCCTATCTACTTGATTTTTACTGAATGACACAAGATGAGTCT
TAGACTTTTGTTTATTTATTTTTTGTCTCATTACAGTTTTTGAATATTTT
TCATTTTCAGTATGACCCAGATAAGGCCAACACAACTCTTACTACTGCCA
ATGGTGCTGCACAACTTAACGTAAGAATTAAAAATCTTGGTATCAATATT
GTTACATTTTGCATGCAAGTCAGTTTCAAATTATGTCTAAATCAGCAATG
CCCTCAATTGAAGTTGATAAATGCTTTGCTATGACCACTGGTGTTTGATC
AATAATTTAAATCAAAACTTTTCTTTCTTGAACAGTTTCAATACAAAGGT
CCAATGAAGTGCTCACCAGAAATGAAAGTTTTTGTTGGTGGAATTGGTAT
TGGTACAACAGAGGATGATGTAAAGAAATATTTTGAACAATTTGGAAAGG
TAATTTGAACTTTTTTCTCTTCAAATACTCCTTCAAAATTAAAAAAACAA
GGAATGTTTTGAAAATAAGACATTTAAAAATCTTAATTTCTTATCCTTCA
GGTCCTTGCTGTCGATATGCCTGTTCATCATGTGTATAAATGTCCCAAAG
GTATGTTTATTATTCAGAATTTCGGACTTTATGCCCCTCAAATATCCAAG
TTTACGAAAATCACCATATTTTTTGATCCACACAAAAACAATTAACAATG
CAAAAAAGTTTAACCCACGCAAATAAATTTTTGAACTTCGCAAAAAAAAA
TTTGACCGTCCATAAAAAAATTCTACCCACATGTCCATTCAACCCAAGCA
CCCACTCAACCCACACCCGTCAAATCCATACCAGGGTAGAATAACTGATT
TTAGAGAGGGCTAACTAACTGTGATTTAAAACTTAATCATTTTCCTTTCC
AACAATTTGTTGACTAGGCTATAAAAAAAAAAAAATTCTATCAATTCATT
TTCTGCTACATCTGGTTGTAATCATACTTACAAATTCCTTAAAATTTTGT
TTTGGTATATATGTTTTTGATAAGGGATATGGTTATGAAGTATAAGCTTT
TCTTGGACGGGTAACTGACCTCAACTTGTCCGTGCACAAGATTACTATCA
TCCCTATTACTATTTTCAGCTTTCTATCTGCTTGAGCCAATTTTATTTTA
TATTGATTTATAATTAGTAGAAACCTAGTTGCACACCTTTGCATTTAACT
CTAGACAAAATATATTGACAGAACTCATATATTTTAGATGTTTAAATATT
TACAATTAATGAAAAATAGCCACAGCACAACTTAGCCTGTTTTTTAAGTA
ACCAAAATATTATATTTGAGATCAGAATATTAACATTTTGAATAACATTT
GACATTACTAGAATTTTTGACCTTCAAAATCTAAAAATATATACATCATT
TTATGATTTTATACTTAAAAGTATTTTAACTAAGAACTTAATAGTCCCAT
ATGCCATTAATCAATGTTTTTGAATGTATGAATTTACTATGTCTTCTTTT
TAGCAAAATATTTCTAATTTATGATTACCTAATTAGGCTTTGCATTTGTT
GGATTTGAGACATTTGATGTAGTTGCAGCTGTAACAAAAGATCGATATCA
TCAGATAAATGGAAAAACGGTGTGATATAAAATATTTTAATGTTGTTTTA
CCAATTATTTTTTCAATTCTTCGTAATTTATAATCAATATTTTTAAAAAG
TTTCAGGTATTTTCACTATTTTGACTGACACTGTAACTAATTTTAGTTCA
GCTCTTTTCAGAAATTTTACCACTATTTTTCTGTTTGTTTCTAGCCTTAG
ACTTTAATATTGTTTGAATGTTATTTTGCAATCATTTGTTCAGTATTTTT
GTTTTTCTGAAAAGCTAATTTTTGCTTATTTTTTAGATTTTAAAATTTGC
CTTTTTTCAGTCAGTNTTATATTGATTTATAATTAGTAGAAACCTAGTTG
CACACCTTTGCATTTAACTCTAGACAAAATATATTGACAGAACTCATATA
TTTTAGATGTTTAAATATTTACAATTAATGAAAAATAGCCACAGCACAAC
TTAGCCTGTTTTTTAAGTAACCAAAATATTATATTTGAGATCAGAATATT
AACATTTTGAATAACATTTGACATTACTAGAATTTTTGACCTTCAAAATC
TAAAAATATATACATCATTTTATGATTTTATACTTAAAAGTATTTTAACT
AAGAACTTAATAGTCCCATATGCCATTAATCAATGTTTTTGAATGTATGA
ATTTACTATGTCTTCTTTTTAGCAAAATATTTCTAATTTATGATTACCTA
ATTAGGCTTTGCATTTGTTGGATTTGAGACATTTGATGTAGTTGCAGCTG
TAACAAAAGATCGATATCATCAGATAAATGGAAAAACGGTGTGATATAAA
ATATTTTAATGTTGTTTTACCAATTATTTTTTCAATTCTTCGTAATTTAT
AATCAATATTTTTAAAAAGTTTCAGGTATTTTCACTATTTTGACTGACAC
TGTAACTAATTTTAGTTCAGCTCTTTTCAGAAATTTTACCACTATTTTTC
TGTTTGTTTCTAGCCTTAGACTTTAATATTGTTTGAATGTTATTTTGCAA
TCATTTGTTCAGTATTTTTGTTTTTCTGAAAAGCTAATTTTTGCTTATTT
TCTAGATTTTAAAATTTGCCTTTTTTCAGTCAGTCATTATTCAGTATTAC
TGTTCTAAACTGAATTTTGAGATTGGTTTATTTTGTTGTAGGTCGAAGTA
AAAGGCTCAGATGAGCAGCAAGCACATTTGAACAAAAAGAAGGCTGAAGG
TATGAGTGAGTACCAGAACTTTCTTATTATTTTAATGATTACCTTTCGAA
TGCTCAAATACTGATTCTCGTCTACGGGAAGGGTTTTTTTCAAATGACCT
TCTTGATTTATTTGCGAATTAAATACCTTAAGGAAAGAAATTTTTGTGGA
ACAAGTTTTTGACAAATCCGCGAAATAAGAATATTATCATGATTTAGACA
GGTTTAGAAAATAACCTATAGTATTAGTGTTTTTGGGGCAGAATAAGCCA
TATTTAAACAAAAATTTGTCTCAACCGCAAAATTAAATTCTGTGAAACTT
CTGAATTTTGAGCTGTGAACTGCGAAATTAAATTCCACAAAAATTTTTTT
CCGCAGAGATTTCTTCCCTTAAGGTAACAACAAACAAGGAATTGAAATGA
ATTTATCTTAAATATTTTGCTTTTTTTTCAGCTATCCGGTATGCTTCTGC
TGGAAGAGGTAGAGGAATTGGATCAGGAAATATTGGAACAGTGACAGGAT
ACGGTGCATATGCAAACCTTGGTCAACCATTAATCGTAAACCCTGCTCAA
CATAGTGTACAATATACAGGTAAGAAGTTAGTTAGCAAAACATATTTGCT
ATAAGCCTTAAATATCAACACTGATCACACCTTGGTAAAAGGATTAATGA
ATTATAGACAAAAGTATGTTAATTAGGGTTTAAACTGGTGTAAATAATGT
TTTTTTTTTTTTTCAACCTGATAAAAAAAGAAATAAAATAATTGATTCGA
CAAATCCTTTTGAACCTTCAGTTGCTTTTTCATTACTATTTTGTTTTTTT
CTCAGTTCCTGCTGCAGCAACTGGTGGATATGTGTATGATCCCGCATCTA
ATACGTATTATCAACTCCCTGGAACTGTCGTCGCTGGTAAGACTATCACT
CAAATTTACCAGATGAATGCACGTCAAAATATTTCAAAACCTTATTTTAT
AAAAAATTACTCAATAGTAGGTTTTAAAATAGATCACTCTTTGGTATCTG
GTCAAAAATATAAGCTCGATAAAATCGCGAAATTTAATCCCCGTTAAAGT
TTATCCCATTAAAGTAGTAACAAAATATTTCTGTAATTAACAGGTGGTGC
AGTTGCAGGTGCAGTGCAAACGGTAGGAACCTCAGTCGCAGCTGCCTCCC
CATACGCTGGTGCAACCATCGCAGCAGGTCAACAAGTCTTAACTTCTCCA
CAAGTTGGTCAGCGAACGTTACAAGCAACTGATATGATCCAAGGACTAGC
AGCAGGCTCAACAGTTGGTAAGTGAGTAATCTACGTAAGTCATCTCTTGA
GAATAACTTTTAAAAGTTTGAGTGTCCAAAAGTTCTAAGTAAACATCATA
GATCAATAACAGTACTTTGTATGTATATGATATTATCAATCATATTATCA
TATTTTTAGCCTTGGGCGCAGCGTATCCAAGCGAAACATCAACCTTTGGG
CCAACTCGACATAACGTGATCGGAGCCAGTGCGCAACAACCGATGGCAGG
AAACACAGTCGCCGATCCTCACGTCGTCTATTCTACAGCAACATCTATTT
CTGCTGGCGATGCTGCTTTGTCAGCGGCTCGTGGTTACCACCCTTATGGA
AGATAAGATATTGAACTTCAAAACTGAAAAAAGAGACTTCAATCGTACTT
TGATCTGTACGTAAAGAAGAAAGCTTTGAAAGACTCGATCTTCACTCATG
GACAGCGATTTTGTAAATAAAAACTTTTTTAATCTATTGATTGATTGATG
CTTTGTCAGTTGGTTCTTCGATACGTGATAATCATATTGCTCTTTGGTGA
CAATTCGGTTTTATAAATGAAAAGACATTTTATTGGATTTGTCTACGCCA
TGCACAATGGATGTAGATATTTTACGCGATAATTTCATTTGAATGAACAA
TTTTTAACGTGAGAACTTTATGGACATGCGCGATATTTCTCTCTTTTTAT
TTGAAAGAAAATTTATTCAATGGAATTACAAAATATTTTGATTGTTTATC
CATTTCTTATTTTTTTATCGGAATTTTCTTTACTTACTATTGAGTCCACT
TCCACATCAGCTTAGTTTGAGATGTGTAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035868XLOC_035868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056953-exon-scaffold_284-1575043694:888849..888875TCONS_00056953-exon-scaffold_284-1575043694:888849..888875Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:888436..888660TCONS_00056953-exon-scaffold_284-1575043694:888436..888660Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:887415..887537TCONS_00056953-exon-scaffold_284-1575043694:887415..887537Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:885777..885870TCONS_00056953-exon-scaffold_284-1575043694:885777..885870Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:884763..884816TCONS_00056953-exon-scaffold_284-1575043694:884763..884816Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:884556..884615TCONS_00056953-exon-scaffold_284-1575043694:884556..884615Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:884277..884390TCONS_00056953-exon-scaffold_284-1575043694:884277..884390Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:884126..884174TCONS_00056953-exon-scaffold_284-1575043694:884126..884174Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:883107..883189TCONS_00056953-exon-scaffold_284-1575043694:883107..883189Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:881927..881984TCONS_00056953-exon-scaffold_284-1575043694:881927..881984Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:881357..881494TCONS_00056953-exon-scaffold_284-1575043694:881357..881494Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:881040..881120TCONS_00056953-exon-scaffold_284-1575043694:881040..881120Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:880659..880832TCONS_00056953-exon-scaffold_284-1575043694:880659..880832Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1575043694:879845..880516TCONS_00056953-exon-scaffold_284-1575043694:879845..880516Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:888849..888875TCONS_00056953-exon-scaffold_284-1510915933:888849..888875Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:888436..888660TCONS_00056953-exon-scaffold_284-1510915933:888436..888660Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:887415..887537TCONS_00056953-exon-scaffold_284-1510915933:887415..887537Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:885777..885870TCONS_00056953-exon-scaffold_284-1510915933:885777..885870Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:884763..884816TCONS_00056953-exon-scaffold_284-1510915933:884763..884816Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:884556..884615TCONS_00056953-exon-scaffold_284-1510915933:884556..884615Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:884277..884390TCONS_00056953-exon-scaffold_284-1510915933:884277..884390Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:884126..884174TCONS_00056953-exon-scaffold_284-1510915933:884126..884174Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:883107..883189TCONS_00056953-exon-scaffold_284-1510915933:883107..883189Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:881927..881984TCONS_00056953-exon-scaffold_284-1510915933:881927..881984Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:881357..881494TCONS_00056953-exon-scaffold_284-1510915933:881357..881494Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:881040..881120TCONS_00056953-exon-scaffold_284-1510915933:881040..881120Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:880659..880832TCONS_00056953-exon-scaffold_284-1510915933:880659..880832Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1510915933:879845..880516TCONS_00056953-exon-scaffold_284-1510915933:879845..880516Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:888849..888875TCONS_00056953-exon-scaffold_284-1491911889:888849..888875Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:888436..888660TCONS_00056953-exon-scaffold_284-1491911889:888436..888660Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:887415..887537TCONS_00056953-exon-scaffold_284-1491911889:887415..887537Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:885777..885870TCONS_00056953-exon-scaffold_284-1491911889:885777..885870Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:884763..884816TCONS_00056953-exon-scaffold_284-1491911889:884763..884816Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:884556..884615TCONS_00056953-exon-scaffold_284-1491911889:884556..884615Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:884277..884390TCONS_00056953-exon-scaffold_284-1491911889:884277..884390Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:884126..884174TCONS_00056953-exon-scaffold_284-1491911889:884126..884174Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:883107..883189TCONS_00056953-exon-scaffold_284-1491911889:883107..883189Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:881927..881984TCONS_00056953-exon-scaffold_284-1491911889:881927..881984Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:881357..881494TCONS_00056953-exon-scaffold_284-1491911889:881357..881494Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:881040..881120TCONS_00056953-exon-scaffold_284-1491911889:881040..881120Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:880659..880832TCONS_00056953-exon-scaffold_284-1491911889:880659..880832Clytia hemisphaericaexon
TCONS_00056953-exon-scaffold_284-1491911889:879845..880516TCONS_00056953-exon-scaffold_284-1491911889:879845..880516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:879845..888875 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.6263	7.61391	17.5145	9.87043	142.093	50.6565	66.8947	48.2596	6.53066	1.29315	7.39199	2.60826	8.38135	5.9703	5.18355	3.31626	14.5583	1.85591	11.8987	4.49405	8.77231	7.19668	18.8113	25.7149	31.6883	37.4836	1.40929	12.1214	14.6821	18.9231
Blast
[Close]
BLAST of TCONS_00056953 vs. Swiss-Prot (Human)
Match: MSI1H (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.090e-34
Identity = 76/221 (34.39%), Postives = 110/221 (49.77%), Query Frame = 2 
Query:  218 KPYIRNPNEEH--CKIFVGGVGKLTNDESLRAYFGKFGEIADSVIMKDKHTNEPRGFAFVTFKTPEAVSAVIEQNNKGGHTLDGKMVDPKPAVPQGPGVQNKPLYDPDKXXXXXXXXXXXXXXXFQYKGPMKCSPEM-----KVFVGGIGIGTTEDDVKKYFEQFGKVLAVDMPVHHVYKCPKGFAFVGFETFDVVAAVTKDRYHQINGKTVEVKGSDEQQ 859
            +P + +P+  H  CK+F+GG+   T  E LR YFG+FGE+ + ++M+D  T   RGF FVTF     V  V+ Q+    H LD K +DPK A P+                                    +  P+M     K+FVGG+ + TT +DVK+YFEQFGKV    +         +GF FV FE+ D+V  V +  +H+IN K VE K +  ++
Sbjct:    7 QPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVAFPR------------------------------------RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
The following BLAST results are available for this feature:
BLAST of TCONS_00056953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSI1H7.090e-3434.39RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
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