TCONS_00056955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056955
Unique NameTCONS_00056955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2149

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056955 ID=TCONS_00056955|Name=TCONS_00056955|organism=Clytia hemisphaerica|type=transcript|length=2149bp
ATCAAGCTTTCACATGGAATGATTTCGGCGGTAGAATCGTTTTTACACGT
CCATTCTTGTTATAATATTCGAATGATTTTGTTTTAGGAGATTTCATTTN
ATTTACACGTCCATTCTTGTTATATATTCGAAGGATTTTGTTTTAGGAGA
TTTCATTTTTAGTGGGATTCATATATACAATACTTGGAGGCCACGGTATC
ATTTTCTTATTGTTTTAGTGGGTAAAAGACGATAAATATTCTCATAAACT
AAAAAACCATGGCTGCTCCTATACAACAAATTTCAAATGGCGCTATACCA
ATTATGTCTGGTGTTGCAGGAACTCCAGTTCAACAGCCAGCTGTTGTtta
ccaacaacaacaaccaatgATTGTCGCAGGTGCTGCTCCGATGGGTTACG
CACCACGAAAGCCCTACATCAGGAATCCGAATGAGGAACATTGCAAAATC
TTTGTCGGAGGTGTTGGTAAATTGACAAATGATGAATCTCTTAGAGCCTA
CTTTGGAAAATTCGGAGAAATTGCAGATAGTGTTATAATGAAAGATAAAC
ATACAAATGAGCCAAGAGGGTTTGCATTCGTCACATTCAAAACACCAGAA
GCTGTTTCAGCTGTCATTGAACAAAATAATAAAGGTGGACATACTCTTGA
TGGAAAAATGGTTGATCCTAAGCCAGCTGTCCCTCAAGGTCCTGGAGTTC
AAAATAAACCCTTGtatgACCCAGATAAGGCCAACACAACTCTTACTACT
GCCAATGGTGCTGCACAACTTAACTTTCAATACAAAGGTCCAATGAAGTG
CTCACCAGAAATGAAAGTTTTTGTTGGTGGAATTGGTATTGGTACAACAG
AGGATGatgtaaagaaatattttgaacaatttgGAAAGGTCCTTGCTGTC
GATATGCCTGTTCATCATGTGTATAAATGTCCCAAAGGCTTTGCATTTGT
TGGATTTGAGACATTTGATGTAGTTGCAGCTGTAACAAAAGATCGATATC
ATCAGATAAATGGAAAAACGGTCGAAGTAAAAGGCTCAGATGAGCAGCAA
GCACATTTGAACAAAAAGAAGGCTGAAGGTATGACTATCCGGTATGCTTC
TGCTGGAAGAGGTAGAGGAATTGGATCAGGAAATATTGGAACAGTGACAG
GATACGGTGCATATGCAAACCTTGGTCAACCATTAATCGTAAACCCTGCT
CAACATAGTGTACAATATACAGtTCCTGCTGCAGCAACTGGTGGATATGT
GTATGATCCCGCATCTAATACGTATTATCAACTCCCTGGAACTGTCGTCG
CTGGTGGTGCAGTTGCAGGTGCAGTGCAAACGGTAGGAACCTCAGTCGCA
GCTGCCTCCCCATACGCTGGTGCAACCATCGCAGCAGGTCAACAAGTCTT
AACTTCTCCACAAGTTGGTCAGCGAACGTTACAAGCAACTGATATGATCC
AAGGACTAGCAGCAGGCTCAACAGTTGCCTTGGGCGCAGCGTATCCAAGC
GAAACATCAACCTTTGGGCCAACTCGACATAACGTGATCGGAGCCAGTGC
GCAACAACCGATGGCAGGAAACACAGTCGCCGATCCTCACGTCGTCTATT
CTACAGCAACATCTATTTCTGCTGGCGATGCTGCTTTGTCAGCGGCTCGT
GGTTACCACCCTTATGGAAGATAAGATATTGAacttcaaaactgaaaaaa
gagaCTTCAATCGTACTTTGATCTGTACGTAAAGAAGAAAGCTTTGAAAG
ACTCGATCTTCACTCATGGACAGcgattttgtaaataaaaacttttttaa
tctattgattgattgatgctTTGTCAGTTGGTTCTTCGATACGTGATAAT
CATATTGCTCTTTGGTGACAATTCGGTTTTataaatgaaaagacatttta
ttGGATTTGTCTACGCCATGCACAATGGATGTAGATATTTTACGCGATAA
TTTCATTTGAATGAACAATTTTTAACGTGAGAACTTTATGGACATGCGCG
atatttctctctttttatttgaaagaaaatttattcaatggaattacaaa
atattttgattgtttatccatttcttatttttttatcgGAATTTTCTTTA
CTTACTATTGAGTCCACTTCCACATCAGCTTAGTTTGAGATGTGTAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_284:879845..888878-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056955 ID=TCONS_00056955|Name=TCONS_00056955|organism=Clytia hemisphaerica|type=transcript|length=9034bp|location=Sequence derived from alignment at scaffold_284:879845..888878- (Clytia hemisphaerica)
ATCAAGCTTTCACATGGAATGATTTCGGCGGTAGAATCGTTTTTACACGT
CCATTCTTGTTATAATATTCGAATGATTTTGTTTTAGGAGATTTCATTTN
ATTTACACGTCCATTCTTGTTATATATTCGAAGGATTTTGTTTTAGGAGA
TTTCATTTTTAGTGGGATTCATATATACAATACTTGGAGGCCACGGTATC
ATTTTCTTATTGTTTTAGTGGGTAAAAGACGATAAATATTCTCATAAACT
AAAAAACCATGGCTGCTCCTATACAACAAATTTCAAATGGCGCTATACCA
ATTATGTCTGGTGTTGCAGGAACTCCAGTTCAACAGCCAGCTGTTGTTTA
CCAACAACAACAACCAATGATTGTCGCAGGTGCTGCTCCGATGGGTTACG
CACCACGAAAGCCCTACATCAGGAATCCGAATGAGGAGCATTGGTAANTT
ACGCACCACGAAAGCCCTACATCAGGAATCCGAATGAGGAACATTGGTAA
GGGAGCTTTTGAAAAATTGACTTTTTAATTTATCCATTATACAGTTATAC
TTGAAAAAAAGAGCTCTGGGAAAATAACCATTGTGTCTTCAAAAGACCAA
CTGTATTAGTTCCATAGGGAAAAATTCATGGTTGTTGGACTTGCAAATAC
GTGTGTCAGTGTACCAATCAAAGGAAATTCGTTTTTACCAATGTTACTTT
TTTCTATATCTAAAGAATTAGTAAACGTTTTAAAATCTGTAAAAAGCTCT
CTACTCCCAAATAGTTCTAGATTACCAGACAATCTCAATCAAACAGAATC
GACGATCGAACCAGTCGAATGCAATCGAATCTCAATCGAGCGTCAAAATT
CTGGGTAATATTCGATAGGTTCGATTGTTGTTCAACTGGTTCGATTGTCG
TTCAACTACATTCGATTGTTTGAGTGAAACAAGGCATGTCCTAAATATAT
TTTGCGTGATGCGCACCGCTTCCCGTTATTCCTCCTTAACTCTCATATAT
AGCTCAAAAGAATCGAATCAACAAGAGGATTTCGAAAAGGGTCAGCTTTT
TAACAAAGATTAGTCTCTCTAAGGGTCAGGTCCTAATCAAACGCAATCGA
ACATCAATCGAACGCAATCGAATATCAATTGAATCTGAAAATTGTGAGAT
TCAATCGCGTTCGACAATCGAATTTCAATCGGTCGATTGCGTTCGATTTG
GTTCGACTGGTTCGATCGTCGATTCCATTTGATTGAGATCGTCTGGAGAT
GAAACCCTGCAAAAACCATGTTCAATCTTATCGTTTCGTTGGTATTGGAA
ACCAAGGAAATTCGCAAAAAATTTATTTCTCCCTTTTTTAGCAAAATCTT
TGTCGGAGGTGTTGGTAAATTGACAAATGATGAATCTCTTAGAGCCTACT
TTGGAAAATTCGGAGAAATTGCAGATAGTGTTATAATGAAAGATAAACAT
ACAAATGAGCCAAGGTAAGTGTCAGCATAAACATATAAACAACTGGACAT
CCATCTCCTTTCTTGTATTTTTGAAGATAACACTGCTAGCTTCGTTGCCG
CCTCATTAAAATCATAAAACCTAACAATAAATTTTGGTATACCTCTTGGG
AATACCTTGGTAAAACCTCAAAACTTCAACAAAAGTCTCTGTTGTTCTAC
TCTTCTCAAGTCTTATCTATATCATAACCAAGATAACTGAGGCAAAATCA
TTGTCAGCTTGTCAAAATTCTGACTAATATTTTTAAATTTAGACTCAAAA
GTATGGAATAATTTTAGAGAGTATGGGATTCAAATTATGATAATCTCATG
GTACAGGCTCTCAACTTTGGCGTACTATTTTTTTCATGTCATAAAAAAAT
TATTAGAGTGACAAAAGGGATGCAAAAGTATACACGCAGTTGATAAAATA
CTTATGCAATGTCAAGCTCTATCAATCCTTTTACCTTAGTAATTCCAATA
AAATGAAATTGTGACGGAATATTGTAGAATTTTATATATCAATCAGGGCT
GCAAATAAGCATCGGTCATCGGTCAATGTCCGACTGAAAAAGCCATTTGA
CCGACTGAAAATCATTTGTGTCGGTCATGATGTCCGAATGAAAAAAAAAC
ATTAATTTGAGTTGAAAACAAATCTTTCACACCCCTGTCTCTTTGTCTAT
TATTACTACTCTTTTACTTTCTTTTAGCTTTCAAGAGTGTTTCTAAAGTT
TACTTTGATTTCATGCGTTTTTATTTTTATCGACTTGCTTTCTTTGTAAC
TTTCATCAGTGTTTCTAAGTTCACTTTTTATTGACTTGCTATCTTTGTAA
ACTTTCAAGAGTGTTTATAAGTTCACTTTTTATCAACTTGCTTTCTTCGT
AACTTTCAAGAGTGTCTCTAAGCTCACTTTTATCAACTCGTTATCGTTGT
AACTTTCAAGGGTCTTTCTAAGTTCACTTATATCGCATTGCTTTCTTCGT
AACTTTAGAAGTTCCAAGGTCACTTTTACCTACTCTCTTTCTCCATAACT
TTCAAGACTGTATGATTTCAGAAAACTTATAGACTGAATGACCGACAGGA
TTTAGAGCTTGACCGACAGAATTTCATCTCAGTCCCGACATGATGTCTGA
TTGACTAGAAATATTTATTTGCAGCCCCGATCAATTTTTTAATACAGTGG
GTAACAAAGCTCGCTTCAAAGACACAATGGAAGATAGTCGTCCAGTCGTT
TATATGTTCAGACAAAAAATTTGAGCCTTGCTAACAGTATCTTATGAAAA
ACTTTGTTTTAAAAAACGTTTTAAATTAAAAAAGCAATGGTGAAATGCTG
AGTCAGCAGAAAAGTAAATTGCTGTTTTTGGAAGGAACTTATGCATTGAG
CAATGATCATCTAAAAAAATTACTTTCCAAAACTCCAAAAAAGAGCAATA
ATTGCTGTTTTTATCTCATATACCCCACTGTATATTTTCAGACTGAAGAG
AAAAACCCTTTTCTTTTGTTATTTCATGATATCTTTTACCTGTTCATTAA
TTTCACAGAGGGTTTGCATTCGTCACATTCAAAACACCAGAAGCTGTTTC
AGCTGTCATTGAACAAAATAATAAAGGTGGACATACTCTTGATGGAAAAA
TGGTAGGTTGTAATGTCTGAAAGAAACTCTACATTATATAATGACAAGAA
AAAAATGACGTTTCTATAAGAGAATCATTCTGTGTTTTTTATACATTTTG
GCACACCTGCAATATTGCCAATATATTGAAGTAGTTTTGGTTTCATTTTT
AAAACTTAATTTGGTTGCTTCATACAGAGAAGTAGGATGAAATAGAAAAC
CAGCTTCCTTGACTACCCCATGCCTTTGTTTTAGCTTTATTAATAAGGTT
AGTTTGATTAGGAAAAGTTGAAGAAAAGATGGCTTGTCCTAAAAATGGCT
GGCCATAAAAGTGGATTTGCGTTTTACATTTGTGCACCTACCTGCTTTTC
AATAAGATGTGCGCAATCCCGTGTGAAGTAGCAAATTTTACACCATTTTA
TTGCCTAAAAATTCTCGTTGTAATGATATTGATTTGTTTCAATAATATTT
GGTCCAGTTTCGGGGAAAGCAATCATTAGAATTGTTAATGTTAGGATATT
GTGAGCAAGAAAATAGGTATCTTGTGGTCTGAGTGAGGTGTTCCCAAAAT
ATAAGCCCCTAAAGTTTAAGCCTAATTAGACTCAAACAAAAGACTTCCAC
CACATCACCTCCCTTAAGGGCAAAGGACCTGGTACATGACGAGCCGTGTC
TTCAAGAAGCTGTTTTTCTATCTCATTGCACTTCTCTGCTTCATATCTTT
GATATCTGGGTTGAAAGAAAAATTATAAAAAATTATATTTTGTTTGTATT
GAGCCTTTCACTGACACTGCTGAGATGGATTGAAAATATGTTATTTTGAG
TTTGGAACAGGTTGGAAACATTTGTTTGAGGCTAGGAAGGTCTGGAAGAT
AAAAGAGTTCTTTTTTCTTTCCTTTACATAGTTTATTGAAGTACGAAAGT
TCCAGAGAAAATCTGAGGTGAGATCAAGTTTCTGACTTCATTATTGTTGT
TATTCTTTGAAGGTTGATCCTAAGCCAGCTGTCCCTCAAGGTCCTGGAGT
TCAAAATAAACCCTTGGTAAGTTTTTTAAGTCAGTCGATCTCTGGATCTT
TGATATTAATGCCCTATCTACTTGATTTTTACTGAATGACACAAGATGAG
TCTTAGACTTTTGTTTATTTATTTTTTGTCTCATTACAGTTTTTGAATAT
TTTTCATTTTCAGTATGACCCAGATAAGGCCAACACAACTCTTACTACTG
CCAATGGTGCTGCACAACTTAACGTAAGAATTAAAAATCTTGGTATCAAT
ATTGTTACATTTTGCATGCAAGTCAGTTTCAAATTATGTCTAAATCAGCA
ATGCCCTCAATTGAAGTTGATAAATGCTTTGCTATGACCACTGGTGTTTG
ATCAATAATTTAAATCAAAACTTTTCTTTCTTGAACAGTTTCAATACAAA
GGTCCAATGAAGTGCTCACCAGAAATGAAAGTTTTTGTTGGTGGAATTGG
TATTGGTACAACAGAGGATGATGTAAAGAAATATTTTGAACAATTTGGAA
AGGTAATTTGAACTTTTTTCTCTTCAAATACTCCTTCAAAATTAAAAAAA
CAAGGAATGTTTTGAAAATAAGACATTTAAAAATCTTAATTTCTTATCCT
TCAGGTCCTTGCTGTCGATATGCCTGTTCATCATGTGTATAAATGTCCCA
AAGGTATGTTTATTATTCAGAATTTCGGACTTTATGCCCCTCAAATATCC
AAGTTTACGAAAATCACCATATTTTTTGATCCACACAAAAACAATTAACA
ATGCAAAAAAGTTTAACCCACGCAAATAAATTTTTGAACTTCGCAAAAAA
AAATTTGACCGTCCATAAAAAAATTCTACCCACATGTCCATTCAACCCAA
GCACCCACTCAACCCACACCCGTCAAATCCATACCAGGGTAGAATAACTG
ATTTTAGAGAGGGCTAACTAACTGTGATTTAAAACTTAATCATTTTCCTT
TCCAACAATTTGTTGACTAGGCTATAAAAAAAAAAAAATTCTATCAATTC
ATTTTCTGCTACATCTGGTTGTAATCATACTTACAAATTCCTTAAAATTT
TGTTTTGGTATATATGTTTTTGATAAGGGATATGGTTATGAAGTATAAGC
TTTTCTTGGACGGGTAACTGACCTCAACTTGTCCGTGCACAAGATTACTA
TCATCCCTATTACTATTTTCAGCTTTCTATCTGCTTGAGCCAATTTTATT
TTATATTGATTTATAATTAGTAGAAACCTAGTTGCACACCTTTGCATTTA
ACTCTAGACAAAATATATTGACAGAACTCATATATTTTAGATGTTTAAAT
ATTTACAATTAATGAAAAATAGCCACAGCACAACTTAGCCTGTTTTTTAA
GTAACCAAAATATTATATTTGAGATCAGAATATTAACATTTTGAATAACA
TTTGACATTACTAGAATTTTTGACCTTCAAAATCTAAAAATATATACATC
ATTTTATGATTTTATACTTAAAAGTATTTTAACTAAGAACTTAATAGTCC
CATATGCCATTAATCAATGTTTTTGAATGTATGAATTTACTATGTCTTCT
TTTTAGCAAAATATTTCTAATTTATGATTACCTAATTAGGCTTTGCATTT
GTTGGATTTGAGACATTTGATGTAGTTGCAGCTGTAACAAAAGATCGATA
TCATCAGATAAATGGAAAAACGGTGTGATATAAAATATTTTAATGTTGTT
TTACCAATTATTTTTTCAATTCTTCGTAATTTATAATCAATATTTTTAAA
AAGTTTCAGGTATTTTCACTATTTTGACTGACACTGTAACTAATTTTAGT
TCAGCTCTTTTCAGAAATTTTACCACTATTTTTCTGTTTGTTTCTAGCCT
TAGACTTTAATATTGTTTGAATGTTATTTTGCAATCATTTGTTCAGTATT
TTTGTTTTTCTGAAAAGCTAATTTTTGCTTATTTTTTAGATTTTAAAATT
TGCCTTTTTTCAGTCAGTNTTATATTGATTTATAATTAGTAGAAACCTAG
TTGCACACCTTTGCATTTAACTCTAGACAAAATATATTGACAGAACTCAT
ATATTTTAGATGTTTAAATATTTACAATTAATGAAAAATAGCCACAGCAC
AACTTAGCCTGTTTTTTAAGTAACCAAAATATTATATTTGAGATCAGAAT
ATTAACATTTTGAATAACATTTGACATTACTAGAATTTTTGACCTTCAAA
ATCTAAAAATATATACATCATTTTATGATTTTATACTTAAAAGTATTTTA
ACTAAGAACTTAATAGTCCCATATGCCATTAATCAATGTTTTTGAATGTA
TGAATTTACTATGTCTTCTTTTTAGCAAAATATTTCTAATTTATGATTAC
CTAATTAGGCTTTGCATTTGTTGGATTTGAGACATTTGATGTAGTTGCAG
CTGTAACAAAAGATCGATATCATCAGATAAATGGAAAAACGGTGTGATAT
AAAATATTTTAATGTTGTTTTACCAATTATTTTTTCAATTCTTCGTAATT
TATAATCAATATTTTTAAAAAGTTTCAGGTATTTTCACTATTTTGACTGA
CACTGTAACTAATTTTAGTTCAGCTCTTTTCAGAAATTTTACCACTATTT
TTCTGTTTGTTTCTAGCCTTAGACTTTAATATTGTTTGAATGTTATTTTG
CAATCATTTGTTCAGTATTTTTGTTTTTCTGAAAAGCTAATTTTTGCTTA
TTTTCTAGATTTTAAAATTTGCCTTTTTTCAGTCAGTCATTATTCAGTAT
TACTGTTCTAAACTGAATTTTGAGATTGGTTTATTTTGTTGTAGGTCGAA
GTAAAAGGCTCAGATGAGCAGCAAGCACATTTGAACAAAAAGAAGGCTGA
AGGTATGAGTGAGTACCAGAACTTTCTTATTATTTTAATGATTACCTTTC
GAATGCTCAAATACTGATTCTCGTCTACGGGAAGGGTTTTTTTCAAATGA
CCTTCTTGATTTATTTGCGAATTAAATACCTTAAGGAAAGAAATTTTTGT
GGAACAAGTTTTTGACAAATCCGCGAAATAAGAATATTATCATGATTTAG
ACAGGTTTAGAAAATAACCTATAGTATTAGTGTTTTTGGGGCAGAATAAG
CCATATTTAAACAAAAATTTGTCTCAACCGCAAAATTAAATTCTGTGAAA
CTTCTGAATTTTGAGCTGTGAACTGCGAAATTAAATTCCACAAAAATTTT
TTTCCGCAGAGATTTCTTCCCTTAAGGTAACAACAAACAAGGAATTGAAA
TGAATTTATCTTAAATATTTTGCTTTTTTTTCAGCTATCCGGTATGCTTC
TGCTGGAAGAGGTAGAGGAATTGGATCAGGAAATATTGGAACAGTGACAG
GATACGGTGCATATGCAAACCTTGGTCAACCATTAATCGTAAACCCTGCT
CAACATAGTGTACAATATACAGGTAAGAAGTTAGTTAGCAAAACATATTT
GCTATAAGCCTTAAATATCAACACTGATCACACCTTGGTAAAAGGATTAA
TGAATTATAGACAAAAGTATGTTAATTAGGGTTTAAACTGGTGTAAATAA
TGTTTTTTTTTTTTTTCAACCTGATAAAAAAAGAAATAAAATAATTGATT
CGACAAATCCTTTTGAACCTTCAGTTGCTTTTTCATTACTATTTTGTTTT
TTTCTCAGTTCCTGCTGCAGCAACTGGTGGATATGTGTATGATCCCGCAT
CTAATACGTATTATCAACTCCCTGGAACTGTCGTCGCTGGTAAGACTATC
ACTCAAATTTACCAGATGAATGCACGTCAAAATATTTCAAAACCTTATTT
TATAAAAAATTACTCAATAGTAGGTTTTAAAATAGATCACTCTTTGGTAT
CTGGTCAAAAATATAAGCTCGATAAAATCGCGAAATTTAATCCCCGTTAA
AGTTTATCCCATTAAAGTAGTAACAAAATATTTCTGTAATTAACAGGTGG
TGCAGTTGCAGGTGCAGTGCAAACGGTAGGAACCTCAGTCGCAGCTGCCT
CCCCATACGCTGGTGCAACCATCGCAGCAGGTCAACAAGTCTTAACTTCT
CCACAAGTTGGTCAGCGAACGTTACAAGCAACTGATATGATCCAAGGACT
AGCAGCAGGCTCAACAGTTGGTAAGTGAGTAATCTACGTAAGTCATCTCT
TGAGAATAACTTTTAAAAGTTTGAGTGTCCAAAAGTTCTAAGTAAACATC
ATAGATCAATAACAGTACTTTGTATGTATATGATATTATCAATCATATTA
TCATATTTTTAGCCTTGGGCGCAGCGTATCCAAGCGAAACATCAACCTTT
GGGCCAACTCGACATAACGTGATCGGAGCCAGTGCGCAACAACCGATGGC
AGGAAACACAGTCGCCGATCCTCACGTCGTCTATTCTACAGCAACATCTA
TTTCTGCTGGCGATGCTGCTTTGTCAGCGGCTCGTGGTTACCACCCTTAT
GGAAGATAAGATATTGAACTTCAAAACTGAAAAAAGAGACTTCAATCGTA
CTTTGATCTGTACGTAAAGAAGAAAGCTTTGAAAGACTCGATCTTCACTC
ATGGACAGCGATTTTGTAAATAAAAACTTTTTTAATCTATTGATTGATTG
ATGCTTTGTCAGTTGGTTCTTCGATACGTGATAATCATATTGCTCTTTGG
TGACAATTCGGTTTTATAAATGAAAAGACATTTTATTGGATTTGTCTACG
CCATGCACAATGGATGTAGATATTTTACGCGATAATTTCATTTGAATGAA
CAATTTTTAACGTGAGAACTTTATGGACATGCGCGATATTTCTCTCTTTT
TATTTGAAAGAAAATTTATTCAATGGAATTACAAAATATTTTGATTGTTT
ATCCATTTCTTATTTTTTTATCGGAATTTTCTTTACTTACTATTGAGTCC
ACTTCCACATCAGCTTAGTTTGAGATGTGTAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035868XLOC_035868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056955-exon-scaffold_284-1575043694:888462..888878TCONS_00056955-exon-scaffold_284-1575043694:888462..888878Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:888383..888408TCONS_00056955-exon-scaffold_284-1575043694:888383..888408Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:887415..887537TCONS_00056955-exon-scaffold_284-1575043694:887415..887537Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:885777..885870TCONS_00056955-exon-scaffold_284-1575043694:885777..885870Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:884763..884816TCONS_00056955-exon-scaffold_284-1575043694:884763..884816Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:884556..884615TCONS_00056955-exon-scaffold_284-1575043694:884556..884615Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:884277..884390TCONS_00056955-exon-scaffold_284-1575043694:884277..884390Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:884126..884174TCONS_00056955-exon-scaffold_284-1575043694:884126..884174Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:882338..882420TCONS_00056955-exon-scaffold_284-1575043694:882338..882420Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:881921..881984TCONS_00056955-exon-scaffold_284-1575043694:881921..881984Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:881357..881494TCONS_00056955-exon-scaffold_284-1575043694:881357..881494Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:881040..881120TCONS_00056955-exon-scaffold_284-1575043694:881040..881120Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:880659..880832TCONS_00056955-exon-scaffold_284-1575043694:880659..880832Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1575043694:879845..880516TCONS_00056955-exon-scaffold_284-1575043694:879845..880516Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:888462..888878TCONS_00056955-exon-scaffold_284-1510915933:888462..888878Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:888383..888408TCONS_00056955-exon-scaffold_284-1510915933:888383..888408Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:887415..887537TCONS_00056955-exon-scaffold_284-1510915933:887415..887537Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:885777..885870TCONS_00056955-exon-scaffold_284-1510915933:885777..885870Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:884763..884816TCONS_00056955-exon-scaffold_284-1510915933:884763..884816Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:884556..884615TCONS_00056955-exon-scaffold_284-1510915933:884556..884615Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:884277..884390TCONS_00056955-exon-scaffold_284-1510915933:884277..884390Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:884126..884174TCONS_00056955-exon-scaffold_284-1510915933:884126..884174Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:882338..882420TCONS_00056955-exon-scaffold_284-1510915933:882338..882420Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:881921..881984TCONS_00056955-exon-scaffold_284-1510915933:881921..881984Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:881357..881494TCONS_00056955-exon-scaffold_284-1510915933:881357..881494Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:881040..881120TCONS_00056955-exon-scaffold_284-1510915933:881040..881120Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:880659..880832TCONS_00056955-exon-scaffold_284-1510915933:880659..880832Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1510915933:879845..880516TCONS_00056955-exon-scaffold_284-1510915933:879845..880516Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:888462..888878TCONS_00056955-exon-scaffold_284-1491911889:888462..888878Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:888383..888408TCONS_00056955-exon-scaffold_284-1491911889:888383..888408Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:887415..887537TCONS_00056955-exon-scaffold_284-1491911889:887415..887537Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:885777..885870TCONS_00056955-exon-scaffold_284-1491911889:885777..885870Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:884763..884816TCONS_00056955-exon-scaffold_284-1491911889:884763..884816Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:884556..884615TCONS_00056955-exon-scaffold_284-1491911889:884556..884615Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:884277..884390TCONS_00056955-exon-scaffold_284-1491911889:884277..884390Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:884126..884174TCONS_00056955-exon-scaffold_284-1491911889:884126..884174Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:882338..882420TCONS_00056955-exon-scaffold_284-1491911889:882338..882420Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:881921..881984TCONS_00056955-exon-scaffold_284-1491911889:881921..881984Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:881357..881494TCONS_00056955-exon-scaffold_284-1491911889:881357..881494Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:881040..881120TCONS_00056955-exon-scaffold_284-1491911889:881040..881120Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:880659..880832TCONS_00056955-exon-scaffold_284-1491911889:880659..880832Clytia hemisphaericaexon
TCONS_00056955-exon-scaffold_284-1491911889:879845..880516TCONS_00056955-exon-scaffold_284-1491911889:879845..880516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:879845..888878 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	3.359e-08	5.56695	0.886207	2.40855e-09	0.0525685	0	0	3.72025e-10	0	1.23368e-05	0	0	0	2.8792e-10	0	0	0	6.58623e-06	2.65967e-05	1.32048e-05	0	0	7.57757e-09	8.97358e-06	1.73651	0	0.00301279
Blast
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BLAST of TCONS_00056955 vs. Swiss-Prot (Human)
Match: MSI1H (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.436e-33
Identity = 78/233 (33.48%), Postives = 113/233 (48.50%), Query Frame = 1 
Query:  409 KPYIRNPNEEH--CKIFVGGVGKLTNDESLRAYFGKFGEIADSVIMKDKHTNEPRGFAFVTFKTPEAVSAVIEQNNKGGHTLDGKMVDPKPAVPQGPGVQNKPLYDPDKXXXXXXXXXXXXXXXFQYKGPMKCSPEM-----KVFVGGIGIGTTEDDVKKYFEQFGKVLAVDMPVHHVYKCPKGFAFVGFETFDVVAAVTKDRYHQINGKTVEVKGSDEQQAHLNKKKAEGMT 1086
            +P + +P+  H  CK+F+GG+   T  E LR YFG+FGE+ + ++M+D  T   RGF FVTF     V  V+ Q+    H LD K +DPK A P+                                    +  P+M     K+FVGG+ + TT +DVK+YFEQFGKV    +         +GF FV FE+ D+V  V +  +H+IN K VE K +  ++       A G +
Sbjct:    7 QPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVAFPR------------------------------------RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200
The following BLAST results are available for this feature:
BLAST of TCONS_00056955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSI1H1.436e-3333.48RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
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