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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056958 ID=TCONS_00056958|Name=TCONS_00056958|organism=Clytia hemisphaerica|type=transcript|length=4073bp
AGGtttaaattttgccaaaaagctATAGGTGAAAATTGCAGATACTATCC
GAAAAATAATAGTACGGGTTTTGGAAAGCTGAAATGGATGGCATAATGAA
GAAGACAattggaaaatttcattttcattcgcATTCTTTCTTTGAGTGAA
AAGTAACACCATAAcagagaaaaaaagggaaagtcGTCCAAATGATACAC
CATAACCGATTGAGCATTTAATTTTATCAGTTGAATGTATCTCAATCGAT
TAGGATTATTTGAACGACTTTTTTAATCATACAATTTCACTTGTTTTTTT
TCCATAAATCATagaccaaaaattttttttacaaggaTGGAAAAATACAA
TCATTGAActgagaaaacaaaaaataatcatataatttataatttttttt
tagttaaTGTAAGACAATTAAGGTGTGTGAATTTCATTGAAGTTTCAAAC
GAAAAAGGTGCAAGAATCTACCTAGCCAAAAAACTTTTCATAGAGAAATG
TTTCAACAACCCACAAAATTATGCTGAGGCTCAGAAAATATTTAGAACTG
AATGTTGAGTCATTTTTTGACACCAATTTCAGATTCAACGTTTGCAGTTA
GAATCTCCTTTTCGCAATGATGTTACCATAAGTAGAAGGTGTAGAAAAAT
ATATctcttatgttttttttgtgatataaacaaaaaaaaaatcgaacgtG
CATAAAATAATCGTATATAAAACactgaaacaaaaacaaacaaataaaca
aacaaacagataACAAGAttctttataaaataaaataattgacCCTGAAT
TTTAACGACAAAAATCGATATGGTATCTCTAATTTTTTATGTAAATCAAT
AATTTTGTNGTTTTTTAACGACAAAAATCGATATTGTATCTCTAAATTTT
TATGTAAATCaataattttgtataaataaaaaaagtacaaaaaaaacaac
aaacaaacattaAACAAAAGGAATCATTGTCcccattttttttgttttat
agaaaaataaatattatagcCAAAACTTgataacgaaaaaaaaacccacT
TTTTATTCTGATagaaattttgttgaaaagtCTTGAACAAATAAATCAAT
CGAGTTATACGAAAAGGCAAGCCTGAACTTAATAGTTAGAGAGTTGTGAA
AGATTTCGATCAATATCGTGCGACTCTGTTCatagctttaaaatagttct
caATCTAtcagcataaaaatattttgctttaaaACGACAGTGAAAAAAAT
TTACGTTGGTATAATAAATTTGTACATGCTAGTATTCTTTTAAGTATAAT
ATCTGCTTTATAACATACATAATATAGGTCTTGATACTTTGAAAACCAGG
TCCTAATAACAAGGAATAATAAAAGTACCCAGTctacaaatttttctttt
tttgtagtTACTTTACTGTTCTTATAGTTTTTACtagtagatgcttataa
aaaaatcttacagATAAGTAAGGCAAAAGACCCTTTACACTGCTTTTTCA
TCACAGTGTGAAAAGAACCTAAAACCTTTTATTTCTTTATAAAGCCAGTT
TTCTCCAAAGGAAACTTTATCTCGGAAAAGCTATTTtagaagaatgaaga
aaagATTTACTGAAAAGCGCAAGGGTGATGTGTGTGatgcaaaacaaaac
aaaaacaaaaaactataaCAAGAGGCTCCTGGGCCTTTCTGACCCTTTTC
GAACAAAAGTACTGGTAAAAGGACATCAAACCATCAGCAGGCAGTGAGAG
AGTCAGATTTTTCAAAGGTTTAGCCTCAAAAATGTACTCCATTCCCAGGC
TAAACCAttgaaagaaaaagtcaaaaaaaaaagtttgaacatcTATTTTA
ATAGAATATTAGAAGTATAGAGCTATTTCATTCATACTAGATAggaaaaa
gattataaatttcaaaacgtTTCATCAGTGAATTCTCAAAAGAATATAAA
ATTTCTTTAGGTCTGTTGTTAGCTTTCCGGTTACTAAGGCGGATATAAAA
CAAAGACTGATGCTAAACAGACTGACTTTTATGAAGTAATTAACATACCA
ATATTGAATTGTATAATATAGAAAGGCCTTTCCTTCTTACAAACCGGTTT
AGTTTAGGAAAAGAGGATATTTCTTAGTAATACAGTGGTAGGTAGTTTGC
AAAAAAGAATATTcctgaaaaaaagacaaaaacactACTAACGcctaaaa
taaaaactaaaacgaaaaaaaaaaaatcaaattcttcattgaaaaacata
aattttgattttacatatagaaaaataaacTATGAAAAAAAAAGGGACGA
GTGATGTAACTTGTGACCAGCACGAAATATTTCTTTGTAAACAATAAATA
AAACTGTAATTATCATAAAAGCGAAAAAAAACCTTCAAAACAACTTGAAG
TCCTCTGTGAAAAAAAGTACAACCCCTTTGTcaatatacactttttttat
aagaaccagtaaaattttgctgaggctcagctgttcttattttttttggc
actttaagCCTCGAATTTGTTCTTaccctgttcttatttataattgaggt
attttaggcactTTACCCAATTTCTACTACTTTGACCTCTAAATTGATTG
AagttgagtaatttcaggctcatcATTGATCttatttttggtgattttga
gcctcattgttcttataaaaaaagtgtatagtTAATAAACTCTATACAAC
AAAGGCAATCTTTTATTCACAGATGAACTTACCTTTTGTTATTATTGata
taaaacaataaaagatagaattttataaaaatcaaaacagcgacaaaaaa
aatgaaagttttataATGAAATGTGCGAATGTGCATAAGAGCGGACGAGC
AGTGAAGCGGAAAGAAGCATCATGCACAGAGTAGTTTAAAAGATGGATAG
TAAAAGCATGTCTGTATTCATTTCGAATTCGATCGTTTGATGTTGTTATG
CATTTTGTGTAATTTTCAAAGGATAAAAATAGGttttcaaataattaaaa
aagaaaaacgaaaaaactcAGAGAAGACCCACTAAAACcacgaaaaattt
attttcaagtaatcaaaatgaaaattaaccccaattttttgaaagattcg
tTCGCAGTAACAATGAAAGtaacaacaaaaaagtaaaacaaacaaacaca
taTCATATAAACACAATAAAATAGTGAGCCCGTTACTTCCAAATCACCTA
TCAGAATATAATAGCCAGCTTTCACACGAAGGTACTGGGGAAAAGGTTGA
ATAATGATAATCATAATAACAATAACGATAATTTTCAAGTCACTAacttt
ttggtaacaaaaattAGTCTATTGTTGATGATAAAGGGTAATAAACACAT
TTTTAATAATAGCAATAATAATAAcactttgtttttttataagtaagAAA
GCCTATCTATGAATACTCTTTTTTGaatagattaatttttttagataatA
GTAACTTTTCTCGTTGTCATAGTGTAGTTCAGTAACCGATTCTTCTTATT
AATAACAAGGATTGGGTTTTGGAGGGTCAAATTCAATCCATCATCCAACT
TCCATCTTTTTTGTCCTTCATCAATCAAACATTTAAAACACACAAACAAA
AACATGATAAGCCAAAACCATCCGTAGACTAGGTGACAGCAAGCAGATCA
AGCCAAGTTTCAAAAACCAAAACAGAAAAACGAGACCAGCCACTCTTTTT
TCGACACATTTTTTTATCGAGAAAATGATTGGCTACCAGGTCCAGGTTGT
GGTGTGCTAGCTGGAGCGAACGGAGTAACACCAGAGGGGACACTGTTATG
AGTAGCAATAGCTGCTCCATAATTTGGTGCATAAGCAGCAGCTGGTGTGG
CCCCTCCAGCCCCACTACCACCACCTGAGGAGTAATCACTGTATNGTAAG
CGGCAGCCGGTGTTGCACCTCCAGCCCCACTACCACCACCTGAGGAGTAA
TCACTGTACGAAGAAGGACTTACTGCGCTGGGAGATTGTGCATATCCACC
AACCTGACTTCCGCTAGCAGCTGCCATATGGTAGGGAGGTCTGAGAGGAT
ATCGACCACTAATTGAGAGCTCT Run BLAST on NCBI transcript from alignment at scaffold_284:901754..905944- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056958 ID=TCONS_00056958|Name=TCONS_00056958|organism=Clytia hemisphaerica|type=transcript|length=4191bp|location=Sequence derived from alignment at scaffold_284:901754..905944- (Clytia hemisphaerica)
AGGTTTAAATTTTGCCAAAAAGCTATAGGTGAAAATTGCAGATACTATCC
GAAAAATAATAGTACGGGTTTTGGAAAGCTGAAATGGATGGCATAATGAA
GAAGACAATTGGAAAATTTCATTTTCATTCGCATTCTTTCTTTGAGTGAA
AAGTAACACCATAACAGAGAAAAAAAGGGAAAGTCGTCCAAATGATACAC
CATAACCGATTGAGCATTTAATTTTATCAGTTGAATGTATCTCAATCGAT
TAGGATTATTTGAACGACTTTTTTAATCATACAATTTCACTTGTTTTTTT
TCCATAAATCATAGACCAAAAATTTTTTTTACAAGGATGGAAAAATACAA
TCATTGAACTGAGAAAACAAAAAATAATCATATAATTTATAATTTTTTTT
TAGTTAATGTAAGACAATTAAGGTGTGTGAATTTCATTGAAGTTTCAAAC
GAAAAAGGTGCAAGAATCTACCTAGCCAAAAAACTTTTCATAGAGAAATG
TTTCAACAACCCACAAAATTATGCTGAGGCTCAGAAAATATTTAGAACTG
AATGTTGAGTCATTTTTTGACACCAATTTCAGATTCAACGTTTGCAGTTA
GAATCTCCTTTTCGCAATGATGTTACCATAAGTAGAAGGTGTAGAAAAAT
ATATCTCTTATGTTTTTTTTGTGATATAAACAAAAAAAAAATCGAACGTG
CATAAAATAATCGTATATAAAACACTGAAACAAAAACAAACAAATAAACA
AACAAACAGATAACAAGATTCTTTATAAAATAAAATAATTGACCCTGAAT
TTTAACGACAAAAATCGATATGGTATCTCTAATTTTTTATGTAAATCAAT
AATTTTGTNGTTTTTTAACGACAAAAATCGATATTGTATCTCTAAATTTT
TATGTAAATCAATAATTTTGTATAAATAAAAAAAGTACAAAAAAAACAAC
AAACAAACATTAAACAAAAGGAATCATTGTCCCCATTTTTTTTGTTTTAT
AGAAAAATAAATATTATAGCCAAAACTTGATAACGAAAAAAAAACCCACT
TTTTATTCTGATAGAAATTTTGTTGAAAAGTCTTGAACAAATAAATCAAT
CGAGTTATACGAAAAGGCAAGCCTGAACTTAATAGTTAGAGAGTTGTGAA
AGATTTCGATCAATATCGTGCGACTCTGTTCATAGCTTTAAAATAGTTCT
CAATCTATCAGCATAAAAATATTTTGCTTTAAAACGACAGTGAAAAAAAT
TTACGTTGGTATAATAAATTTGTACATGCTAGTATTCTTTTAAGTATAAT
ATCTGCTTTATAACATACATAATATAGGTCTTGATACTTTGAAAACCAGG
TCCTAATAACAAGGAATAATAAAAGTACCCAGTCTACAAATTTTTCTTTT
TTTGTAGTTACTTTACTGTTCTTATAGTTTTTACTAGATGCTTATAAAAA
AATCTTACAGATANGACTTGGTCCTAATAACAAGGAATAATAAAAGTACC
CAGTCTACAAATTTTTCTTTTTTTGTAGTTACTTTACTGTTCTTATAGTT
TTTACTAGATGCTTATAAAAAAATCTTACAGATAAGTAAGGCAAAAGACC
CTTTACACTGCTTTTTCATCACAGTGTGAAAAGAACCTAAAACCTTTTAT
TTCTTTATAAAGCCAGTTTTCTCCAAAGGAAACTTTATCTCGGAAAAGCT
ATTTTAGAAGAATGAAGAAAAGATTTACTGAAAAGCGCAAGGGTGATGTG
TGTGATGCAAAACAAAACAAAAACAAAAAACTATAACAAGAGGCTCCTGG
GCCTTTCTGACCCTTTTCGAACAAAAGTACTGGTAAAAGGACATCAAACC
ATCAGCAGGCAGTGAGAGAGTCAGATTTTTCAAAGGTTTAGCCTCAAAAA
TGTACTCCATTCCCAGGCTAAACCATTGAAAGAAAAAGTCAAAAAAAAAA
GTTTGAACATCTATTTTAATAGAATATTAGAAGTATAGAGCTATTTCATT
CATACTAGATAGGAAAAAGATTATAAATTTCAAAACGTTTCATCAGTGAA
TTCTCAAAAGAATATAAAATTTCTTTAGGTCTGTTGTTAGCTTTCCGGTT
ACTAAGGCGGATATAAAACAAAGACTGATGCTAAACAGACTGACTTTTAT
GAAGTAATTAACATACCAATATTGAATTGTATAATATAGAAAGGCCTTTC
CTTCTTACAAACCGGTTTAGTTTAGGAAAAGAGGATATTTCTTAGTAATA
CAGTGGTAGGTAGTTTGCAAAAAAGAATATTCCTGAAAAAAAGACAAAAA
CACTACTAACGCCTAAAATAAAAACTAAAACGAAAAAAAAAAAATCAAAT
TCTTCATTGAAAAACATAAATTTTGATTTTACATATAGAAAAATAAACTA
TGAAAAAAAAAGGGACGAGTGATGTAACTTGTGACCAGCACGAAATATTT
CTTTGTAAACAATAAATAAAACTGTAATTATCATAAAAGCGAAAAAAAAC
CTTCAAAACAACTTGAAGTCCTCTGTGAAAAAAAGTACAACCCCTTTGTC
AATATACACTTTTTTTATAAGAACCAGTAAAATTTTGCTGAGGCTCAGCT
GTTCTTATTTTTTTTGGCACTTTAAGCCTCGAATTTGTTCTTACCCTGTT
CTTATTTATAATTGAGGTATTTTAGGCACTTTACCCAATTTCTACTACTT
TGACCTCTAAATTGATTGAAGTTGAGTAATTTCAGGCTCATCATTGATCT
TATTTTTGGTGATTTTGAGCCTCATTGTTCTTATAAAAAAAGTGTATAGT
TAATAAACTCTATACAACAAAGGCAATCTTTTATTCACAGATGAACTTAC
CTTTTGTTATTATTGATATAAAACAATAAAAGATAGAATTTTATAAAAAT
CAAAACAGCGACAAAAAAAATGAAAGTTTTATAATGAAATGTGCGAATGT
GCATAAGAGCGGACGAGCAGTGAAGCGGAAAGAAGCATCATGCACAGAGT
AGTTTAAAAGATGGATAGTAAAAGCATGTCTGTATTCATTTCGAATTCGA
TCGTTTGATGTTGTTATGCATTTTGTGTAATTTTCAAAGGATAAAAATAG
GTTTTCAAATAATTAAAAAAGAAAAACGAAAAAACTCAGAGAAGACCCAC
TAAAACCACGAAAAATTTATTTTCAAGTAATCAAAATGAAAATTAACCCC
AATTTTTTGAAAGATTCGTTCGCAGTAACAATGAAAGTAACAACAAAAAA
GTAAAACAAACAAACACATATCATATAAACACAATAAAATAGTGAGCCCG
TTACTTCCAAATCACCTATCAGAATATAATAGCCAGCTTTCACACGAAGG
TACTGGGGAAAAGGTTGAATAATGATAATCATAATAACAATAACGATAAT
TTTCAAGTCACTAACTTTTTGGTAACAAAAATTAGTCTATTGTTGATGAT
AAAGGGTAATAAACACATTTTTAATAATAGCAATAATAATAACACTTTGT
TTTTTTATAAGTAAGAAAGCCTATCTATGAATACTCTTTTTTGAATAGAT
TAATTTTTTTAGATAATAGTAACTTTTCTCGTTGTCATAGTGTAGTTCAG
TAACCGATTCTTCTTATTAATAACAAGGATTGGGTTTTGGAGGGTCAAAT
TCAATCCATCATCCAACTTCCATCTTTTTTGTCCTTCATCAATCAAACAT
TTAAAACACACAAACAAAAACATGATAAGCCAAAACCATCCGTAGACTAG
GTGACAGCAAGCAGATCAAGCCAAGTTTCAAAAACCAAAACAGAAAAACG
AGACCAGCCACTCTTTTTTCGACACATTTTTTTATCGAGAAAATGATTGG
CTACCAGGTCCAGGTTGTGGTGTGCTAGCTGGAGCGAACGGAGTAACACC
AGAGGGGACACTGTTATGAGTAGCAATAGCTGCTCCATAATTTGGTGCAT
AAGCAGCAGCTGGTGTGGCCCCTCCAGCCCCACTACCACCACCTGAGGAG
TAATCACTGTATNGTAAGCGGCAGCCGGTGTTGCACCTCCAGCCCCACTA
CCACCACCTGAGGAGTAATCACTGTACGAAGAAGGACTTACTGCGCTGGG
AGATTGTGCATATCCACCAACCTGACTTCCGCTAGCAGCTGCCATATGGT
AGGGAGGTCTGAGAGGATATCGACCACTAATTGAGAGCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056958-exon-scaffold_284-1575043694:904508..905944 | TCONS_00056958-exon-scaffold_284-1575043694:904508..905944 | Clytia hemisphaerica | exon |
| TCONS_00056958-exon-scaffold_284-1575043694:901754..904389 | TCONS_00056958-exon-scaffold_284-1575043694:901754..904389 | Clytia hemisphaerica | exon |
| TCONS_00056958-exon-scaffold_284-1510915933:904508..905944 | TCONS_00056958-exon-scaffold_284-1510915933:904508..905944 | Clytia hemisphaerica | exon |
| TCONS_00056958-exon-scaffold_284-1510915933:901754..904389 | TCONS_00056958-exon-scaffold_284-1510915933:901754..904389 | Clytia hemisphaerica | exon |
| TCONS_00056958-exon-scaffold_284-1491911889:904508..905944 | TCONS_00056958-exon-scaffold_284-1491911889:904508..905944 | Clytia hemisphaerica | exon |
| TCONS_00056958-exon-scaffold_284-1491911889:901754..904389 | TCONS_00056958-exon-scaffold_284-1491911889:901754..904389 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:901754..905944 - |
Blast
The following BLAST results are available for this feature:
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