Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056969 ID=TCONS_00056969|Name=TCONS_00056969|organism=Clytia hemisphaerica|type=transcript|length=1641bp GCCAAACCTCTAATACATAAATCTCTGTTGTCATCATTATAAGTGTTCTA CTATAGTtgtcaaatcattaaaaaagaactGTCAACTTAGTTACTCCTGA CAACGCTAACCGCAATAGAGAACAATAGAGCTCTTTATCATCGATTCTAA CAATCGTCCGAGAGAGAGTAAGGGATGACTATAAAAGCTTATGTAGATTA AGTAGCTAGTTCAATTAAGACTTTCGACCAAGAGAAGACGCAAAGACGAT TGGAAAATACACATAGAGTGAAAGGAAaaccaaatttcaattttttttag tacGACAAAGTTATTACGCAAATAGGAGaactaaattttttaagaacCGA CTTaaaggtgaagaaaaaaatagaagGGGAAAAGGATTTTGGAGATATTG TTTTCGTTATTGAGAAGAAACGAACCGTCTGAAATCGAAGGAAAAACATT cagatttgaaaaataaaatactcaAGCAGTTTTTAAAAGAACTTTCAACC AACACACAAttcaacaacaaacaacacCATCACGCAAAATGGAAAAATAC ATGAACATCAAAGCTCCTTACAAACGTCAATCCAGTGGAGGTAATGGAAA ATCAGACTCCAAAAGCAGTAAAGGCAAAAGCAAAGCTACCTTAAAGACTG GCAATGAATACATTCGCGGTATCACTGGTTCGTCAGCTCTGGTCAGCAGT TACGGAACTATGAACTCTAAAATAAACACCACAAAATCGACTACCGGAAC ATACGGACGAAGCAATACCCTTGGGAAAAGTCACTCTTTCCTTGGTggta aaaacaataacaacaacTCATCCACATTGGGAAAAAGTAATTCGATTCTC GGTGGAAGCAAAAGCAGCAGTTCCTCAACTGGTCGACGATCAATCTTCAG CTTAAGAAAGAAATAAGTTGATTTCAGTTGAAGAAGCTGCAAGGGGTTTT ATCACTTGGCAATCAAATTTCGACAGCCCtgataaaaaattagaaacttT GTCCaaattggaaagataattttgaccGGATGTCGATTATAAATAGCAAG CGATTGATATTTAATTAAACAAACTGTCGCCAAAATCATCTTGAAAGTGA TTAAGCTATCAAACGAACGCTGTAGAACCGATTGGCATTGGCCAGCGTTC TCTAATATGCTTTCATCATTTAATAGGTTAACAATTTAAAATGATTTATT GTTCCCATTAATGATGGTATCAAAAGATTATTGTGTAGAAAGAACTTTAA AACACTTGTAAATTTTGttagaaataaatttttgtacATACTGTACAgtg agaatattttttaaaatttctttttttttgtaatttatggAAAGAATTTG GTTTtttcaaattcgtcaaaatatgttttatagacttttagaaaaattat aaaatttgatttctttttttcaaaacatcgtaattaaaaatgaaattttg aaaaaagaatcttAATCTTTATTGGTTCAGCTTTTCCCCAAATTCTGAGC TTGTAAACccttcttttttataaatatgtagttaaaatttttgttctttG TAATATTACTTGCTGACTTATAAAAATTACTATAAAAAGAAAGTGGAATT TTAAAGTAaaagttgaaattctattgattttttatattttt Run BLAST on NCBI protein sequence of TCONS_00056969-protein >TCONS_00056969-protein ID=TCONS_00056969-protein|Name=TCONS_00056969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MEKYMNIKAPYKRQSSGGNGKSDSKSSKGKSKATLKTGNEYIRGITGSSA LVSSYGTMNSKINTTKSTTGTYGRSNTLGKSHSFLGGKNNNNNSSTLGKS NSILGGSKSSSSSTGRRSIFSLRKK Run BLAST on NCBI transcript from alignment at scaffold_284:1206178..1208344- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056969 ID=TCONS_00056969|Name=TCONS_00056969|organism=Clytia hemisphaerica|type=transcript|length=2167bp|location=Sequence derived from alignment at scaffold_284:1206178..1208344- (Clytia hemisphaerica) GCCAAACCTCTAATACATAAATCTCTGTTGTCATCATTATAAGTGTTCTA
CTATAGTTGTCAAATCATTAAAAAAGAACTGTCAACTTAGTTACTCCTGA
CAACGCTAACCGCAATAGAGAACAATAGAGCTCTTTATCATCGATTCTAA
CAATCGTCCGAGAGAGAGTAAGGGATGACTATAAAAGCTTATGTAGATTA
AGTAGCTAGTTCAATTAAGACTTTCGACCAAGAGAAGACGCAAAGACGAT
TGGAAAATACACATAGAGTGAAAGGAAAACCAAATTTCAATTTTTTTTAG
TACGACAAAGTTATTACGCAAATAGGAGAACTAAATTTTTTAAGAACCGA
CTTAAAGGTGAAGAAAAAAATAGAAGGGGAAAAGGATTTTGGAGATATTG
TTTTCGTTATTGAGAAGAAACGAACCGTCTGAAATCGAAGGAAAAACATT
CAGATTTGAAAAATAAAATACTCAAGCAGTTTTTAAAAGGTAAGACAAAG
TTATAATATTTTTAGCGTAGCGGCAAACACACTGCGATGCAAAGTTGTAT
AATGTTTTTGCAAGCATCTATTTTTAAAGATAGAGGACGTTGGAGGTGTT
CTATTCCGCATGTAGTGATCATCGTTTTTAAAACAAGCACAGTAGTCCCG
GCTTGCATGAACAACGTCGTTTCAACATCATCGTACGTTCACAGCATCCA
TATAACGTCAGATGAACGTTGAAACAACGAGCCACGTTGTTTGCCGGCTG
AGAATCTCTCCATCATGCTAAAACGTCTTGTTTTTACTACTGAGTGGGAT
TTTAAGTTTATAAACATAACATTTTGATTGTTCAAAACTGAAAAGAAAAA
CCGGTTCGAGCAAGAAGCAAAAATAGTATAAAAGCTTACTTTGGCTCAGT
GGTGTTCACAGTATAAAGCTTCACTAAACAACTGAACATCTTATTGATAG
TATTATTCCTGTGGTACACCACACAACTGATTTTAATCATTGTTTTGATC
ATATTCTATCAACAGAACTTTCAACCAACACACAATTCAACAACAAACAA
CACCATCACGCAAAATGGAAAAATACATGAACATCAAAGCTCCTTACAAA
CGTCAATCCAGTGGAGGTAATGGAAAATCAGACTCCAAAAGCAGTAAAGG
CAAAAGCAAAGCTACCTTAAAGACTGGCAATGAATACATTCGCGGTATCA
CTGGTTCGTCAGCTCTGGTCAGCAGTTACGGAACTATGAACTCTAAAATA
AACACCACAAAATCGACTACCGGAACATACGGACGAAGCAATACCCTTGG
GAAAAGTCACTCTTTCCTTGGTGGTAAAAACAATAACAACAACTCATCCA
CATTGGGAAAAAGTAATTCGATTCTCGGTGGAAGCAAAAGCAGCAGTTCC
TCAACTGGTCGACGATCAATCTTCAGCTTAAGAAAGAAATAAGTTGATTT
CAGTTGAAGAAGCTGCAAGGGGTTTTATCACTTGGCAATCAAATTTCGAC
AGCCCTGATAAAAAATTAGAAACTTTGTCCAAATTGGAAAGATAATTTTG
ACCGGATGTCGATTATAAATAGCAAGCGATTGATATTTAATTAAACAAAC
TGTCGCCAAAATCATCTTGAAAGTGATTAAGCTATCAAACGAACGCTGTA
GAACCGATTGGCATTGGCCAGCGTTCTCTAATATGCTTTCATCATTTAAT
AGGTTAACAATTTAAAATGATTTATTGTTCCCATTAATGATGGTATCAAA
AGATTATTGTGTAGAAAGAACTTTAAAACACTTGTAAATTTTGTTAGAAA
TAAATTTTTGTACATACTGTACAGTGAGAATATTTTTTAAAATTTCTTTT
TTTTTGTAATTTATGGAAAGAATTTGGTTTTTTCAAATTCGTCAAAATAT
GTTTTATAGACTTTTAGAAAAATTATAAAATTTGATTTCTTTTTTTCAAA
ACATCGTAATTAAAAATGAAATTTTGAAAAAAGAATCTTAATCTTTATTG
GTTCAGCTTTTCCCCAAATTCTGAGCTTGTAAACCCTTCTTTTTTATAAA
TATGTAGTTAAAATTTTTGTTCTTTGTAATATTACTTGCTGACTTATAAA
AATTACTATAAAAAGAAAGTGGAATTTTAAAGTAAAAGTTGAAATTCTAT
TGATTTTTTATATTTTT Coding sequence (CDS) from alignment at scaffold_284:1206178..1208344- >TCONS_00056969 ID=TCONS_00056969|Name=TCONS_00056969|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_284:1206178..1208344- (Clytia hemisphaerica) ATGGAAAAATACATGAACATCAAAGCTCCTTACAAACGTCAATCCAGTGG AGGTAATGGAAAATCAGACTCCAAAAGCAGTAAAGGCAAAAGCAAAGCTA CCTTAAAGACTGGCAATGAATACATTCGCGGTATCACTGGTTCGTCAGCT CTGGTCAGCAGTTACGGAACTATGAACTCTAAAATAAACACCACAAAATC GACTACCGGAACATACGGACGAAGCAATACCCTTGGGAAAAGTCACTCTT TCCTTGGTGGTAAAAACAATAACAACAACTCATCCACATTGGGAAAAAGT AATTCGATTCTCGGTGGAAGCAAAAGCAGCAGTTCCTCAACTGGTCGACG ATCAATCTTCAGCTTAAGAAAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056969-exon-scaffold_284-1575043694:1207856..1208344 | TCONS_00056969-exon-scaffold_284-1575043694:1207856..1208344 | Clytia hemisphaerica | exon |
TCONS_00056969-exon-scaffold_284-1575043694:1206178..1207329 | TCONS_00056969-exon-scaffold_284-1575043694:1206178..1207329 | Clytia hemisphaerica | exon |
TCONS_00056969-exon-scaffold_284-1510915933:1207856..1208344 | TCONS_00056969-exon-scaffold_284-1510915933:1207856..1208344 | Clytia hemisphaerica | exon |
TCONS_00056969-exon-scaffold_284-1510915933:1206178..1207329 | TCONS_00056969-exon-scaffold_284-1510915933:1206178..1207329 | Clytia hemisphaerica | exon |
TCONS_00056969-exon-scaffold_284-1491911889:1207856..1208344 | TCONS_00056969-exon-scaffold_284-1491911889:1207856..1208344 | Clytia hemisphaerica | exon |
TCONS_00056969-exon-scaffold_284-1491911889:1206178..1207329 | TCONS_00056969-exon-scaffold_284-1491911889:1206178..1207329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_284 | supercontig | scaffold_284:1206178..1208344 - |
Blast
The following BLAST results are available for this feature:
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