TCONS_00056969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056969
Unique NameTCONS_00056969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056969 ID=TCONS_00056969|Name=TCONS_00056969|organism=Clytia hemisphaerica|type=transcript|length=1641bp
GCCAAACCTCTAATACATAAATCTCTGTTGTCATCATTATAAGTGTTCTA
CTATAGTtgtcaaatcattaaaaaagaactGTCAACTTAGTTACTCCTGA
CAACGCTAACCGCAATAGAGAACAATAGAGCTCTTTATCATCGATTCTAA
CAATCGTCCGAGAGAGAGTAAGGGATGACTATAAAAGCTTATGTAGATTA
AGTAGCTAGTTCAATTAAGACTTTCGACCAAGAGAAGACGCAAAGACGAT
TGGAAAATACACATAGAGTGAAAGGAAaaccaaatttcaattttttttag
tacGACAAAGTTATTACGCAAATAGGAGaactaaattttttaagaacCGA
CTTaaaggtgaagaaaaaaatagaagGGGAAAAGGATTTTGGAGATATTG
TTTTCGTTATTGAGAAGAAACGAACCGTCTGAAATCGAAGGAAAAACATT
cagatttgaaaaataaaatactcaAGCAGTTTTTAAAAGAACTTTCAACC
AACACACAAttcaacaacaaacaacacCATCACGCAAAATGGAAAAATAC
ATGAACATCAAAGCTCCTTACAAACGTCAATCCAGTGGAGGTAATGGAAA
ATCAGACTCCAAAAGCAGTAAAGGCAAAAGCAAAGCTACCTTAAAGACTG
GCAATGAATACATTCGCGGTATCACTGGTTCGTCAGCTCTGGTCAGCAGT
TACGGAACTATGAACTCTAAAATAAACACCACAAAATCGACTACCGGAAC
ATACGGACGAAGCAATACCCTTGGGAAAAGTCACTCTTTCCTTGGTggta
aaaacaataacaacaacTCATCCACATTGGGAAAAAGTAATTCGATTCTC
GGTGGAAGCAAAAGCAGCAGTTCCTCAACTGGTCGACGATCAATCTTCAG
CTTAAGAAAGAAATAAGTTGATTTCAGTTGAAGAAGCTGCAAGGGGTTTT
ATCACTTGGCAATCAAATTTCGACAGCCCtgataaaaaattagaaacttT
GTCCaaattggaaagataattttgaccGGATGTCGATTATAAATAGCAAG
CGATTGATATTTAATTAAACAAACTGTCGCCAAAATCATCTTGAAAGTGA
TTAAGCTATCAAACGAACGCTGTAGAACCGATTGGCATTGGCCAGCGTTC
TCTAATATGCTTTCATCATTTAATAGGTTAACAATTTAAAATGATTTATT
GTTCCCATTAATGATGGTATCAAAAGATTATTGTGTAGAAAGAACTTTAA
AACACTTGTAAATTTTGttagaaataaatttttgtacATACTGTACAgtg
agaatattttttaaaatttctttttttttgtaatttatggAAAGAATTTG
GTTTtttcaaattcgtcaaaatatgttttatagacttttagaaaaattat
aaaatttgatttctttttttcaaaacatcgtaattaaaaatgaaattttg
aaaaaagaatcttAATCTTTATTGGTTCAGCTTTTCCCCAAATTCTGAGC
TTGTAAACccttcttttttataaatatgtagttaaaatttttgttctttG
TAATATTACTTGCTGACTTATAAAAATTACTATAAAAAGAAAGTGGAATT
TTAAAGTAaaagttgaaattctattgattttttatattttt
Run BLAST on NCBI

protein sequence of TCONS_00056969-protein

>TCONS_00056969-protein ID=TCONS_00056969-protein|Name=TCONS_00056969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MEKYMNIKAPYKRQSSGGNGKSDSKSSKGKSKATLKTGNEYIRGITGSSA
LVSSYGTMNSKINTTKSTTGTYGRSNTLGKSHSFLGGKNNNNNSSTLGKS
NSILGGSKSSSSSTGRRSIFSLRKK
Run BLAST on NCBI

transcript from alignment at scaffold_284:1206178..1208344-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056969 ID=TCONS_00056969|Name=TCONS_00056969|organism=Clytia hemisphaerica|type=transcript|length=2167bp|location=Sequence derived from alignment at scaffold_284:1206178..1208344- (Clytia hemisphaerica)
GCCAAACCTCTAATACATAAATCTCTGTTGTCATCATTATAAGTGTTCTA CTATAGTTGTCAAATCATTAAAAAAGAACTGTCAACTTAGTTACTCCTGA CAACGCTAACCGCAATAGAGAACAATAGAGCTCTTTATCATCGATTCTAA CAATCGTCCGAGAGAGAGTAAGGGATGACTATAAAAGCTTATGTAGATTA AGTAGCTAGTTCAATTAAGACTTTCGACCAAGAGAAGACGCAAAGACGAT TGGAAAATACACATAGAGTGAAAGGAAAACCAAATTTCAATTTTTTTTAG TACGACAAAGTTATTACGCAAATAGGAGAACTAAATTTTTTAAGAACCGA CTTAAAGGTGAAGAAAAAAATAGAAGGGGAAAAGGATTTTGGAGATATTG TTTTCGTTATTGAGAAGAAACGAACCGTCTGAAATCGAAGGAAAAACATT CAGATTTGAAAAATAAAATACTCAAGCAGTTTTTAAAAGGTAAGACAAAG TTATAATATTTTTAGCGTAGCGGCAAACACACTGCGATGCAAAGTTGTAT AATGTTTTTGCAAGCATCTATTTTTAAAGATAGAGGACGTTGGAGGTGTT CTATTCCGCATGTAGTGATCATCGTTTTTAAAACAAGCACAGTAGTCCCG GCTTGCATGAACAACGTCGTTTCAACATCATCGTACGTTCACAGCATCCA TATAACGTCAGATGAACGTTGAAACAACGAGCCACGTTGTTTGCCGGCTG AGAATCTCTCCATCATGCTAAAACGTCTTGTTTTTACTACTGAGTGGGAT TTTAAGTTTATAAACATAACATTTTGATTGTTCAAAACTGAAAAGAAAAA CCGGTTCGAGCAAGAAGCAAAAATAGTATAAAAGCTTACTTTGGCTCAGT GGTGTTCACAGTATAAAGCTTCACTAAACAACTGAACATCTTATTGATAG TATTATTCCTGTGGTACACCACACAACTGATTTTAATCATTGTTTTGATC ATATTCTATCAACAGAACTTTCAACCAACACACAATTCAACAACAAACAA CACCATCACGCAAAATGGAAAAATACATGAACATCAAAGCTCCTTACAAA CGTCAATCCAGTGGAGGTAATGGAAAATCAGACTCCAAAAGCAGTAAAGG CAAAAGCAAAGCTACCTTAAAGACTGGCAATGAATACATTCGCGGTATCA CTGGTTCGTCAGCTCTGGTCAGCAGTTACGGAACTATGAACTCTAAAATA AACACCACAAAATCGACTACCGGAACATACGGACGAAGCAATACCCTTGG GAAAAGTCACTCTTTCCTTGGTGGTAAAAACAATAACAACAACTCATCCA CATTGGGAAAAAGTAATTCGATTCTCGGTGGAAGCAAAAGCAGCAGTTCC TCAACTGGTCGACGATCAATCTTCAGCTTAAGAAAGAAATAAGTTGATTT CAGTTGAAGAAGCTGCAAGGGGTTTTATCACTTGGCAATCAAATTTCGAC AGCCCTGATAAAAAATTAGAAACTTTGTCCAAATTGGAAAGATAATTTTG ACCGGATGTCGATTATAAATAGCAAGCGATTGATATTTAATTAAACAAAC TGTCGCCAAAATCATCTTGAAAGTGATTAAGCTATCAAACGAACGCTGTA GAACCGATTGGCATTGGCCAGCGTTCTCTAATATGCTTTCATCATTTAAT AGGTTAACAATTTAAAATGATTTATTGTTCCCATTAATGATGGTATCAAA AGATTATTGTGTAGAAAGAACTTTAAAACACTTGTAAATTTTGTTAGAAA TAAATTTTTGTACATACTGTACAGTGAGAATATTTTTTAAAATTTCTTTT TTTTTGTAATTTATGGAAAGAATTTGGTTTTTTCAAATTCGTCAAAATAT GTTTTATAGACTTTTAGAAAAATTATAAAATTTGATTTCTTTTTTTCAAA ACATCGTAATTAAAAATGAAATTTTGAAAAAAGAATCTTAATCTTTATTG GTTCAGCTTTTCCCCAAATTCTGAGCTTGTAAACCCTTCTTTTTTATAAA TATGTAGTTAAAATTTTTGTTCTTTGTAATATTACTTGCTGACTTATAAA AATTACTATAAAAAGAAAGTGGAATTTTAAAGTAAAAGTTGAAATTCTAT TGATTTTTTATATTTTT

Coding sequence (CDS) from alignment at scaffold_284:1206178..1208344-

>TCONS_00056969 ID=TCONS_00056969|Name=TCONS_00056969|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_284:1206178..1208344- (Clytia hemisphaerica)
ATGGAAAAATACATGAACATCAAAGCTCCTTACAAACGTCAATCCAGTGG
AGGTAATGGAAAATCAGACTCCAAAAGCAGTAAAGGCAAAAGCAAAGCTA
CCTTAAAGACTGGCAATGAATACATTCGCGGTATCACTGGTTCGTCAGCT
CTGGTCAGCAGTTACGGAACTATGAACTCTAAAATAAACACCACAAAATC
GACTACCGGAACATACGGACGAAGCAATACCCTTGGGAAAAGTCACTCTT
TCCTTGGTGGTAAAAACAATAACAACAACTCATCCACATTGGGAAAAAGT
AATTCGATTCTCGGTGGAAGCAAAAGCAGCAGTTCCTCAACTGGTCGACG
ATCAATCTTCAGCTTAAGAAAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035875XLOC_035875Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056969-proteinTCONS_00056969-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056969-exon-scaffold_284-1575043694:1207856..1208344TCONS_00056969-exon-scaffold_284-1575043694:1207856..1208344Clytia hemisphaericaexon
TCONS_00056969-exon-scaffold_284-1575043694:1206178..1207329TCONS_00056969-exon-scaffold_284-1575043694:1206178..1207329Clytia hemisphaericaexon
TCONS_00056969-exon-scaffold_284-1510915933:1207856..1208344TCONS_00056969-exon-scaffold_284-1510915933:1207856..1208344Clytia hemisphaericaexon
TCONS_00056969-exon-scaffold_284-1510915933:1206178..1207329TCONS_00056969-exon-scaffold_284-1510915933:1206178..1207329Clytia hemisphaericaexon
TCONS_00056969-exon-scaffold_284-1491911889:1207856..1208344TCONS_00056969-exon-scaffold_284-1491911889:1207856..1208344Clytia hemisphaericaexon
TCONS_00056969-exon-scaffold_284-1491911889:1206178..1207329TCONS_00056969-exon-scaffold_284-1491911889:1206178..1207329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1206178..1208344 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (296.434 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0495499 0.048319 0.19636 0.054888 0.0334104 0 10.6705 9.48262 5.24022 1.96536 2.38453 1.617 97.5112 88.2444 75.9252 132.508 35.0209 38.6213 127.995 150.748 76.9876 86.4721 101.78 141.189 133.823 130.711 296.434 156.804 1.6224 1.09264
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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