TCONS_00057026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057026
Unique NameTCONS_00057026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057026 ID=TCONS_00057026|Name=TCONS_00057026|organism=Clytia hemisphaerica|type=transcript|length=479bp
GAGACTGTATCTAATTTTCAAATCCAACGTGGCGCGAACATGATGGGTAT
CATGCAAAAATGTCCTCAAGCCAAATTCTACAATTACGTCAAAGCATCTA
ACAGACGAGACAGAGCTGGCAAACCCATGGTGTTCCCTTACGCTTTACAC
TACAACCAAAACAGCGCCAAACCCACCATTGCTTTCTTTGAGATCAGTGA
TGGTAAAAATACATTCATGTGTGGAACTAAGCCCAGTTGTCCATCCACCC
CCGCCCCTACAACAACGGGTGCACCCACCCCAACCAACTATACAGGTCCA
ACTACCAACGCCACGGCTGCACCCACTACAACAATGGCGCCCACTTTACC
ACCACCCATGCCGTTGAGTGGAGCTGATTGTTCCGTATTCTTGAAAGGAG
TCGAACAAGGTTTCAGTGATCAACGAGGTGTTATGGAATTCTTGGTTCCA
CAAAAATCTAATGAATGGCAACTTCaggt
Run BLAST on NCBI

protein sequence of TCONS_00057026-protein

>TCONS_00057026-protein ID=TCONS_00057026-protein|Name=TCONS_00057026-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
ETVSNFQIQRGANMMGIMQKCPQAKFYNYVKASNRRDRAGKPMVFPYALH
YNQNSAKPTIAFFEISDGKNTFMCGTKPSCPSTPAPTTTGAPTPTNYTGP
TTNATAAPTTTMAPTLPPPMPLSGADCSVFLKGVEQGFSDQRGVMEFLVP
QKSNEWQLQ
Run BLAST on NCBI

transcript from alignment at scaffold_284:834557..835035

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057026 ID=TCONS_00057026|Name=TCONS_00057026|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at scaffold_284:834557..835035 (Clytia hemisphaerica)
acctGAAGTTGCCATTCATTAGATTTTTGTGGAACCAAGAATTCCATAAC
ACCTCGTTGATCACTGAAACCTTGTTCGACTCCTTTCAAGAATACGGAAC
AATCAGCTCCACTCAACGGCATGGGTGGTGGTAAAGTGGGCGCCATTGTT
GTAGTGGGTGCAGCCGTGGCGTTGGTAGTTGGACCTGTATAGTTGGTTGG
GGTGGGTGCACCCGTTGTTGTAGGGGCGGGGGTGGATGGACAACTGGGCT
TAGTTCCACACATGAATGTATTTTTACCATCACTGATCTCAAAGAAAGCA
ATGGTGGGTTTGGCGCTGTTTTGGTTGTAGTGTAAAGCGTAAGGGAACAC
CATGGGTTTGCCAGCTCTGTCTCGTCTGTTAGATGCTTTGACGTAATTGT
AGAATTTGGCTTGAGGACATTTTTGCATGATACCCATCATGTTCGCGCCA
CGTTGGATTTGAAAATTAGATACAGTCTC

Coding sequence (CDS) from alignment at scaffold_284:834557..835035

>TCONS_00057026 ID=TCONS_00057026|Name=TCONS_00057026|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_284:834557..835035 (Clytia hemisphaerica)
ctGAAGTTGCCATTCATTAGATTTTTGTGGAACCAAGAATTCCATAACAC
CTCGTTGATCACTGAAACCTTGTTCGACTCCTTTCAAGAATACGGAACAA
TCAGCTCCACTCAACGGCATGGGTGGTGGTAAAGTGGGCGCCATTGTTGT
AGTGGGTGCAGCCGTGGCGTTGGTAGTTGGACCTGTATAGTTGGTTGGGG
TGGGTGCACCCGTTGTTGTAGGGGCGGGGGTGGATGGACAACTGGGCTTA
GTTCCACACATGAATGTATTTTTACCATCACTGATCTCAAAGAAAGCAAT
GGTGGGTTTGGCGCTGTTTTGGTTGTAGTGTAAAGCGTAAGGGAACACCA
TGGGTTTGCCAGCTCTGTCTCGTCTGTTAGATGCTTTGACGTAATTGTAG
AATTTGGCTTGAGGACATTTTTGCATGATACCCATCATGTTCGCGCCACG
TTGGATTTGAAAATTAGATACAGTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035921XLOC_035921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057026-exon-scaffold_284-1491911889:834557..835035TCONS_00057026-exon-scaffold_284-1491911889:834557..835035Clytia hemisphaericaexon
TCONS_00057026-exon-scaffold_284-1510915933:834557..835035TCONS_00057026-exon-scaffold_284-1510915933:834557..835035Clytia hemisphaericaexon
TCONS_00057026-exon-scaffold_284-1575043694:834557..835035TCONS_00057026-exon-scaffold_284-1575043694:834557..835035Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057026-proteinTCONS_00057026-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:834557..835035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.128135	0.148777	0.145555	0	0	0.168934	0.316308	0	0.137154	0	0	0	0.181509	0	0	33.8338	38.7227	0	0	68.6038	66.1814	43.2393	79.5804	74.3478	102.489	0.180174	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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