TCONS_00057031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057031
Unique NameTCONS_00057031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057031 ID=TCONS_00057031|Name=TCONS_00057031|organism=Clytia hemisphaerica|type=transcript|length=482bp
CTATTATGGACAAACCCTTCTAAAAGATTACAGTACACGTAGTGTTCATA
TTATATCATgataatttgtataaaaattttatttttttattttcgatata
aaataagcaaaaaagtaaaaatcagacAGAAAAtgtagagaaaaaaaatt
gacattatAAACTTTAAAATAATGGACTTGTGGATCTGTATTGTCTTTTA
ACAGCATCAAAGTAATTTATTTGACTAATGATTGGTGATGAAATTATGGT
AAAATAGTGTTTCAAGTGGGCGGGTCCACCCATTCTCTATAACATGGATG
TTTGTTACCTATTATGAACAGGTGGGTGTttccaaccaaaaaagcccaaa
acATGCGCCAAGGTCACAAAACACAATCTGTATCCAGATGTgtgaacaat
aaaaaaataatatgtgaTGGTCGTCATTTTATCCAGTGTTCTGGCGGCAA
TCAAATATATGTTTCGTTCGTGTCAAAAATCT
Run BLAST on NCBI

transcript from alignment at scaffold_284:1116588..1117069

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057031 ID=TCONS_00057031|Name=TCONS_00057031|organism=Clytia hemisphaerica|type=transcript|length=482bp|location=Sequence derived from alignment at scaffold_284:1116588..1117069 (Clytia hemisphaerica)
AGATTTTTGACACGAACGAAACATATATTTGATTGCCGCCAGAACACTGG
ATAAAATGACGACCAtcacatattatttttttattgttcacACATCTGGA
TACAGATTGTGTTTTGTGACCTTGGCGCATgttttgggcttttttggttg
gaaACACCCACCTGTTCATAATAGGTAACAAACATCCATGTTATAGAGAA
TGGGTGGACCCGCCCACTTGAAACACTATTTTACCATAATTTCATCACCA
ATCATTAGTCAAATAAATTACTTTGATGCTGTTAAAAGACAATACAGATC
CACAAGTCCATTATTTTAAAGTTTataatgtcaattttttttctctacaT
TTTCTgtctgatttttacttttttgcttattttatatcgaaaataaaaaa
ataaaatttttatacaaattatcATGATATAATATGAACACTACGTGTAC
TGTAATCTTTTAGAAGGGTTTGTCCATAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035926XLOC_035926Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057031-exon-scaffold_284-1491911889:1116588..1117069TCONS_00057031-exon-scaffold_284-1491911889:1116588..1117069Clytia hemisphaericaexon
TCONS_00057031-exon-scaffold_284-1510915933:1116588..1117069TCONS_00057031-exon-scaffold_284-1510915933:1116588..1117069Clytia hemisphaericaexon
TCONS_00057031-exon-scaffold_284-1575043694:1116588..1117069TCONS_00057031-exon-scaffold_284-1575043694:1116588..1117069Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1116588..1117069 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48858	0.482342	0	1.1437	2.79691	0.834537	1.5875	0.823701	0.986438	0	1.367	1.86419	1.23276	1.41829	1.97421	2.34548	1.57832	2.98733	4.64755	4.56101	2.59542	1.48559	1.22945	2.41958	1.56845	0.39373	1.34311	1.55589	2.45608	1.83548
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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