TCONS_00057042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057042
Unique NameTCONS_00057042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057042 ID=TCONS_00057042|Name=TCONS_00057042|organism=Clytia hemisphaerica|type=transcript|length=309bp
cttgcTCTTAACTTTTCAAGGTTCTTAACGTGCTCTTGTTTTCACATTTT
CAGAGTATTTTTGACCATCCTCttagaaattgggtgttttattAAAGCcc
tcaaagctttaaaatgttcctaatgttcgtaatattttggccatcgaagc
cgtatgttattatattatttgttctcataaaaaaactttgGAATGTAACT
CATGGCCATggtcaaagttttattttataagaacatcgagACCTTTGACG
TGGAAGCTTTCGGATACAGTATTCTAAACTTTTTGTTCTTTAGGGACCCG
GATTTCGGC
Run BLAST on NCBI

transcript from alignment at scaffold_284:1434057..1434365

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057042 ID=TCONS_00057042|Name=TCONS_00057042|organism=Clytia hemisphaerica|type=transcript|length=309bp|location=Sequence derived from alignment at scaffold_284:1434057..1434365 (Clytia hemisphaerica)
GCCGAAATCCGGGTCCCTAAAGAACAAAAAGTTTAGAATACTGTATCCGA
AAGCTTCCACGTCAAAGGTctcgatgttcttataaaataaaactttgacc
ATGGCCATGAGTTACATTCcaaagtttttttatgagaacaaataatataa
taacatacggcttcgatggccaaaatattacgaacattaggaacatttta
aagctttgaggGCTTTaataaaacacccaatttctaaGAGGATGGTCAAA
AATACTCTGAAAATGTGAAAACAAGAGCACGTTAAGAACCTTGAAAAGTT
AAGAgcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035937XLOC_035937Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057042-exon-scaffold_284-1491911889:1434057..1434365TCONS_00057042-exon-scaffold_284-1491911889:1434057..1434365Clytia hemisphaericaexon
TCONS_00057042-exon-scaffold_284-1510915933:1434057..1434365TCONS_00057042-exon-scaffold_284-1510915933:1434057..1434365Clytia hemisphaericaexon
TCONS_00057042-exon-scaffold_284-1575043694:1434057..1434365TCONS_00057042-exon-scaffold_284-1575043694:1434057..1434365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1434057..1434365 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.803002	0.392806	1.91281	1.13365	1.3677	0.853615	0	0.740269	0	0	0.235836	0.734754	0.805423	0.432171	0.2662	0	0	0.788906	1.37141	0	0.406582	0.369642	0.380723	0.339786	0.486232	0.51892	0.393583	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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