TCONS_00057044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057044
Unique NameTCONS_00057044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057044 ID=TCONS_00057044|Name=TCONS_00057044|organism=Clytia hemisphaerica|type=transcript|length=266bp
GCACATAACTAATAAAACAAAACCGTTTCTCGCTAACTACACCATTCACa
atgagattcttgaatgtgtCGACAATGCCAAATATCTTGGTGTCATCATA
AACAAACGCTTGTAATGGAATACACACATTGATATTGTTTGCAAAAAAGG
TACACAAACACGAAATTTTCTACAGCGAAATCTGAGAGGATGCACCAAAG
CCACCAAAGCAAAAGCCTACAAGACGTACATAAACCCAATCCTCAACTAC
GCATCTACTGTCTGGA
Run BLAST on NCBI

transcript from alignment at scaffold_284:1475925..1476190

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057044 ID=TCONS_00057044|Name=TCONS_00057044|organism=Clytia hemisphaerica|type=transcript|length=266bp|location=Sequence derived from alignment at scaffold_284:1475925..1476190 (Clytia hemisphaerica)
TCCAGACAGTAGATGCGTAGTTGAGGATTGGGTTTATGTACGTCTTGTAG
GCTTTTGCTTTGGTGGCTTTGGTGCATCCTCTCAGATTTCGCTGTAGAAA
ATTTCGTGTTTGTGTACCTTTTTTGCAAACAATATCAATGTGTGTATTCC
ATTACAAGCGTTTGTTTATGATGACACCAAGATATTTGGCATTGTCGaca
cattcaagaatctcattGTGAATGGTGTAGTTAGCGAGAAACGGTTTTGT
TTTATTAGTTATGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035939XLOC_035939Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057044-exon-scaffold_284-1491911889:1475925..1476190TCONS_00057044-exon-scaffold_284-1491911889:1475925..1476190Clytia hemisphaericaexon
TCONS_00057044-exon-scaffold_284-1510915933:1475925..1476190TCONS_00057044-exon-scaffold_284-1510915933:1475925..1476190Clytia hemisphaericaexon
TCONS_00057044-exon-scaffold_284-1575043694:1475925..1476190TCONS_00057044-exon-scaffold_284-1575043694:1475925..1476190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1475925..1476190 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.87461	3.96057	2.28691	3.63937	4.14485	3.77275	5.09039	3.69683	2.52958	3.13329	6.66449	2.39903	2.53253	3.42254	2.88416	0.484229	0.911	2.24541	3.45162	2.97452	3.4828	5.09202	0.738041	3.8929	1.54222	2.61702	2.17537	3.72947	0.815702	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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