TCONS_00057050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057050
Unique NameTCONS_00057050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057050 ID=TCONS_00057050|Name=TCONS_00057050|organism=Clytia hemisphaerica|type=transcript|length=1436bp
AAAGGAGTTGGAGACAGCCGGCAAAAAGGTCATCAAAGCTGTTCAAGGTC
TCACGTTCGATCTTGAATCTATTTCGAAACGACCAAAAGGAGATTCACTA
CTACAACTTCAACCTTTCAAAGATGACGAAGGAATCATACGTGTCGGTGG
TCGTCTGAAGAAATCAAGTCTTCAGATCGAATTGAAGCATCCAATCATTC
TCCCCAAAGCTCATCCACTTTCAAAGATGATACTGCGTTGGTGCCACATC
AAAGCAGCGCACAGCGGCAGAGGTTTGACAATCAACGAAGTAAGAACCTC
TGGCTATTGGATCATCGGAATCAGCTCGTTAACCAGAAGTTTCATCACAA
GCTGTGTCCTCTGTCGTCGATTCAGAGGAAAACAAATGCAACAAAAGATG
GCAGACCTACCAGAAGACAGACTGGAACCAGAACCTCCATTCACCTACGC
TGCAGTCGACATGTTTGGACCCTTTGCAATCAAAGTGCGAAGGGCAACTG
TGAAGAACTACGTCGGTTTGTTCACCTGCATGTCTTCAAGAGCTGTCCAT
CTGGAGAGTACAACATCCATGAATACTGACGCGTTCATTCTGATGCTGAG
ACGTGTCATCGCCAGACGAGGCAACATTCGATCACTGAGGTCAGACAATG
GCACCAATTTCGTCGGTGCTGACAATGAGATGAAGAAAGCCATCCATGAA
CTCGATCACGAACGAATCAACGATTTCCTTCAAGGCAACGGAGGAGAATG
GCTACATTGGAAGAAGAATCCACCAAAGGCCAGCCACATGGGTGGCGTCT
GGGAACGACAAATCAGAAGGCTGATTTATATTGTAGGAAGCACTGGAGAA
GAGTTCAACACATTGCCAACGAGTTTTGGACCCGCTGGAGGAAGAAATAT
CTCCCAACCCTACAATCCAGATCAAAATGGAATCAACTACAAAGAAACAT
CAAAGTCGACGACATCGTCATCATCAACGATGAGAGCAGTCATCGAAACG
ACTGGAAACTTGGACGAGTTATTGATGTCAATCGAAGCGATGATGGCAAC
GTTCGAAGCTCCAAATTGAAGACTTCATCTGGTGAATTCGTACGTCCGAT
TACGAAGTTGGTTTCTCTCGTCGATTGAGCGATGACTGAGCTATCGAAAC
AGCGTCTACAAATACGTGTAGTGTATTATATGTTATTGAAAGAATGAATT
GAAGTCATTCTATATTATGTTGTTGAAAGAATGAAATGAAGTCATTCTAT
TATATATCGTGTTGAAAGAATGAATTGAAGTCATTCTATATTTCGTCGTC
AAAAGAATGAATTGAAGTCATTCTACGTGAAATGTTATCTTTCGATTTGA
TTCGTTTACTTGGATGATTTGCTAATTACGACAACATGCTTACCAGATTG
ATAATGATTGATTTCAGGACATAAGTATGAACTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_285:3103..4758+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057050 ID=TCONS_00057050|Name=TCONS_00057050|organism=Clytia hemisphaerica|type=transcript|length=1656bp|location=Sequence derived from alignment at scaffold_285:3103..4758+ (Clytia hemisphaerica)
AAAGGAGTTGGAGACAGCCGGCAAAAAGGTCATCAAAGCTGTTCAAGGTC
TCACGTTCGATCTTGAATCTATTTCGAAACGACCAAAAGGAGATTCACTA
CTACAACTTCAACCTTTCAAAGATGACGAAGGAATCATACGTGTCGGTGG
TCGTCTGAAGAAATCAAGTCTTCAGATCGAATTGAAGCATCCAATCATTC
TCCCCAAAGCTCATCCACTTTCAAAGATGATACTGCGTTGGTGCCACATC
AAAGCAGCGCACAGCGGCAGAGGTTTGACAATCAACGAAGTAAGAACCTC
TGGCTATTGGATCATCGGAATCAGCTCGTTAACCAGAAGTTTCATCACAA
GCTGTGTCCTCTGTCGTCGATTCAGAGGAAAACAAATGCAACAAAAGATG
GCAGACCTACCAGAAGACAGACTGGAACCAGAACCTCCATTCACCTACGC
TGCAGTCGACATGTTTGGACCCTTTGCAATCAAAGTGCGAAGGGCAACTG
TGAAGAACTACGTCGGTTTGTTCACCTGCATGTCTTCAAGAGCTGTCCAT
CTGGAGAGTACAACATCCATGAATACTGACGCGTTCATTCTGATGCTGAG
ACGTGTCATCGCCAGACGAGGCAACATTCGATCACTGAGGTCAGACAATG
GCACCAATTTCGTCGGTGCTGACAATGAGATGAAGAAAGCCATCCATGAA
CTCGATCACGAACGAATCAACGATTTCCTTCAAGGCAACGGAGGAGAATG
GCTACATTGGAAGAAGAATCCACCAAAGGCCAGCCACATGGGTGGCGTCT
GGGAACGACAAATCAGGTCAGTACGTTCCATTCTTTCTTCCCTTCTTCAC
ACTCATGGCGAAAGTTTGAACGATGAGTCCTTTAGGACGTTGCTGGCTGA
AGTTGAGGCAATCTTAAATTCGAAACCCCTGACTGTTGAAAGCTTGAATG
ACCCAAACAGTCCATTGCCTCTTTCCCCTGCAAATCTGCTTACcatgaaa
tcgaaagtaatcatGCCACCTCCTGGAGTTTTCCAGAAGGCTGATTTATA
TTGTAGGAAGCACTGGAGAAGAGTTCAACACATTGCCAACGAGTTTTGGA
CCCGCTGGAGGAAGAAATATCTCCCAACCCTACAATCCAGATCAAAATGG
AATCAACTACAAAGAAACATCAAAGTCGACGACATCGTCATCATCAACGA
TGAGAGCAGTCATCGAAACGACTGGAAACTTGGACGAGTTATTGATGTCA
ATCGAAGCGATGATGGCAACGTTCGAAGCTCCAAATTGAAGACTTCATCT
GGTGAATTCGTACGTCCGATTACGAAGTTGGTTTCTCTCGTCGATTGAGC
GATGACTGAGCTATCGAAACAGCGTCTACAAATACGTGTAGTGTATTATA
TGTTATTGAAAGAATGAATTGAAGTCATTCTATATTATGTTGTTGAAAGA
ATGAAATGAAGTCATTCTATTATATATCGTGTTGAAAGAATGAATTGAAG
TCATTCTATATTTCGTCGTCAAAAGAATGAATTGAAGTCATTCTACGTGA
AATGTTATCTTTCGATTTGATTCGTTTACTTGGATGATTTGCTAATTACG
ACAACATGCTTACCAGATTGATAATGATTGATTTCAGGACATAAGTATGA
ACTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035943XLOC_035943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057050-exon-scaffold_285-1491911889:3103..3918TCONS_00057050-exon-scaffold_285-1491911889:3103..3918Clytia hemisphaericaexon
TCONS_00057050-exon-scaffold_285-1510915933:3103..3918TCONS_00057050-exon-scaffold_285-1510915933:3103..3918Clytia hemisphaericaexon
TCONS_00057050-exon-scaffold_285-1575043694:3103..3918TCONS_00057050-exon-scaffold_285-1575043694:3103..3918Clytia hemisphaericaexon
TCONS_00057050-exon-scaffold_285-1491911889:4139..4758TCONS_00057050-exon-scaffold_285-1491911889:4139..4758Clytia hemisphaericaexon
TCONS_00057050-exon-scaffold_285-1510915933:4139..4758TCONS_00057050-exon-scaffold_285-1510915933:4139..4758Clytia hemisphaericaexon
TCONS_00057050-exon-scaffold_285-1575043694:4139..4758TCONS_00057050-exon-scaffold_285-1575043694:4139..4758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:3103..4758 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.160146	0.0662969	0	0	0.621375	0	0.72211	0	0	0	0.100499	0	0.105717	0	0.0459366	0.0307364	0.0321635	0	0.0462063	0	0.0369722	0	0	0	0	0.0693821	0.78579
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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