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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057061 ID=TCONS_00057061|Name=TCONS_00057061|organism=Clytia hemisphaerica|type=transcript|length=3027bpRun BLAST on NCBI transcript from alignment at scaffold_285:183105..200906+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057061 ID=TCONS_00057061|Name=TCONS_00057061|organism=Clytia hemisphaerica|type=transcript|length=17802bp|location=Sequence derived from alignment at scaffold_285:183105..200906+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057061 vs. Swiss-Prot (Human)
Match: SC5A9 (Sodium/glucose cotransporter 4 OS=Homo sapiens GN=SLC5A9 PE=1 SV=2) HSP 1 Score: 478.019 bits (1229), Expect = 8.696e-155 Identity = 265/556 (47.66%), Postives = 360/556 (64.75%), Query Frame = 2
Query: 773 NMYSGALFIQQSVGWNLYLSIFGLLALTGICTLTGGLATVIYLDTLMAFVMVGGAAIMTFIGFKEIGWYSGLRAKYPNAMADEVLLGNTTCGIPRHDSFRLLRDPIDSDLPWPGFMFGQTSASIWYWCADQVIVQRALAAKSLSHAQGGAVLAGYIKILPMFIMVMPGMISRVLFPNEVGCVDPDKCMAICESRTGCTNIALPKLVLEIMPSGLRGXXXXXXXXXXXSDLTSIFNSASTIFTMDVYRSIRKQAGTRELMIVGRVFILILCVIGVLWVPVLKEFQGGQLFIYIQAVSAYLSPPIAAVYLLAIFWQRSNEQGTFWAMMVGFAVGITRMILDFTYPAPSCSDAAQDTRPPIIKKLLFHYFYVALLLFVLTLIVCVVISLLTEPPDEELIIRTTVWTKYDSRIRSDELSXXXXXXXXXXXXIRRRFTSTGSATDGATLEMKERQTTTKDSDDNSRVSLMTSHTIYSSNESITNQADVIVHQPRPSCCKRALYFICGLSEDPIEERKSMDEQKDHIREVISLKQDPTAKKFLHINXXXXXXXXXXXXXYFT 2440
+++SGALFIQ ++GWNLYLS LL +T + T+ GGL VIY D L +MVGGA ++ F+GF+++GWY GL +Y A+ + V + NTTC +PR D+F +LRDP+ D+PWPG +FG T + W WC DQVIVQR+L+AKSLSHA+GG+VL GY+KILPMF +VMPGMISR LFP+EVGCVDPD C IC +R GC+NIA PKLV+ +MP GLRG+M+AV+MAALMS LTSIFNS+ST+FT+DV++ R+++ +ELM+VGRVF++ L VI +LW+P+++ GQLF YIQAV++YL+PPI A++LLAIF +R E G FW ++ G VG+ RMIL+F+YPAP+C + D RP ++K FHY Y A+LL LT IV V++SL T P EE + R T WT R+ LSE EI R A GA + N S+ + P S K + CGLS P E+ S E+ +++ S++++P + +IN +L+L + IFL YF
Sbjct: 170 DIFSGALFIQMALGWNLYLSTGILLVVTAVYTIAGGLMAVIYTDALQTVIMVGGALVLMFLGFQDVGWYPGLEQRYRQAIPN-VTVPNTTCHLPRPDAFHILRDPVSGDIPWPGLIFGLTVLATWCWCTDQVIVQRSLSAKSLSHAKGGSVLGGYLKILPMFFIVMPGMISRALFPDEVGCVDPDVCQRICGARVGCSNIAYPKLVMALMPVGLRGLMIAVIMAALMSSLTSIFNSSSTLFTIDVWQRFRRKSTEQELMVVGRVFVVFLVVISILWIPIIQSSNSGQLFDYIQAVTSYLAPPITALFLLAIFCKRVTEPGAFWGLVFGLGVGLLRMILEFSYPAPACGEV--DRRPAVLKD--FHYLYFAILLCGLTAIVIVIVSLCTTPIPEEQLTRLTWWT------RNCPLSELEKEAHESTPEISERPAGECPAGGGA-----------------------------AENSSLGQEQP---EAPSRSWGKLLWSWFCGLSGTP-EQALSPAEKAALEQKLTSIEEEPLWRHVCNINAVLLLAINIFLWGYFA 681 HSP 2 Score: 150.599 bits (379), Expect = 1.605e-37 Identity = 85/159 (53.46%), Postives = 122/159 (76.73%), Query Frame = 1
Query: 358 WSMFQSKRGTVSGYFLAGRFMTFLPVGMSLFASNIGSEHXXXXXXXXXXXXXXXXXFEFNALMFLQLLGFVFLPVYISSGVFTLPEYIHKRFGGNRIRIFLAVLSLLLYIFTKISVNMYSGALFIQQSVGWNLYLSPGEHVFRCFIHPTISGLESLSFN 834
WS ++ RGT+ GYFLAGR M++ P+G SL +SN+GS IGL+G+GAA G++VG FE+NA L LG+VF+PVYI++GV T+P+Y+ KRFGG RI+++++VLSL+LYIFTKIS +++SGALFIQ ++GWNLYLS G + ++ GL ++ +
Sbjct: 54 WSSIRASRGTIGGYFLAGRSMSWWPIGASLMSSNVGSGLFIGLAGTGAAGGLAVGGFEWNATWLLLALGWVFVPVYIAAGVVTMPQYLKKRFGGQRIQVYMSVLSLILYIFTKISTDIFSGALFIQMALGWNLYLSTGILLVVTAVYTIAGGLMAVIYT 212 The following BLAST results are available for this feature:
BLAST of TCONS_00057061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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