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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057065 ID=TCONS_00057065|Name=TCONS_00057065|organism=Clytia hemisphaerica|type=transcript|length=1167bpRun BLAST on NCBI transcript from alignment at scaffold_285:283799..289703+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057065 ID=TCONS_00057065|Name=TCONS_00057065|organism=Clytia hemisphaerica|type=transcript|length=5905bp|location=Sequence derived from alignment at scaffold_285:283799..289703+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057065 vs. Swiss-Prot (Human)
Match: ZFP2 (Zinc finger protein 2 homolog OS=Homo sapiens GN=ZFP2 PE=1 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 1.772e-60 Identity = 108/259 (41.70%), Postives = 152/259 (58.69%), Query Frame = -2
Query: 72 VGNDEVKCNVSGKNTDHKKGRSGICTTKSDEKVIETEKFDCERCGKLFKKKRYLLLHQEKTIC--IHECKECGKTFSSQHQYTLHKRVHNNVRPYLCDVCGKRFIQASHLQAHQRTHTNERPFICDVCGKSFVQSSGLKTHLRSHSQERPYECTVCGKTFTQSGNLKMHVRTHTAEKPYACDQCDKSFAISSNLTQHIKSKHTEERSFSCDVCGRAFHRRSNMVAHQQTHLGEKKFQCGICEKNFSRMDSLKRHLKKHS 842
G KCN GK + T + EK ++C CGK F + +L++HQ +EC +CGK FS TLH+R H +PY C+ CGK F Q+++L HQR H+ +PF C+ CGK+F ++S L H R H+ E+PYEC VCGK FT +L +H HT EKPY C++C K+F+ S+ L +H + HT E+ + CD CG+AF + S++ HQ+TH GEK +QC C K FSR +L RH + H+
Sbjct: 209 TGEKPYKCNECGKAFTQSMNLTVHQRTHTGEK-----PYECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLHQRNHTGEKPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVHQVIHTGEKPYECNECGKAFSQSAYLIEH-QRIHTGEKPYECDQCGKAFIKNSSLTVHQRTHTGEKPYQCNECGKAFSRSTNLTRHQRTHT 461 HSP 2 Score: 199.904 bits (507), Expect = 1.784e-58 Identity = 108/267 (40.45%), Postives = 156/267 (58.43%), Query Frame = -2
Query: 51 VGNDEVKCNVSGKNTDHKKGRSGICTTKSDEKVIETEK-FDCERCGKLFKKKRYLLLHQEKTIC--IHECKECGKTFSSQHQYTLHKRVHNNVRPYLCDVCGKRFIQASHLQAHQRTHTNERPFICDVCGKSFVQSSGLKTHLRSHSQERPYECTVCGKTFTQSGNLKMHVRTHTAEKPYACDQCDKSFAISSNLTQHIKSKHTEERSFSCDVCGRAFHRRSNMVAHQQTHLGEKKFQCGICEKNFSRMDSLKRHLKKHSEAELSKC 842
G KCNV GK H RS + +++ EK + C CGK F + L +HQ ++CKECGK F H+R+H +PY C+ CGK F Q+ +L HQRTHT E+P+ C+ CGK+F QS L H RSH+ E+PYEC+ CGK F++S L +H R HT EKPY C++C KSF+ S+ L +H + H+ + F C+ CG+AF + S++ H++ H GEK ++C +C K+F+ SL H H+ + +C
Sbjct: 125 TGEKPYKCNVCGK---HFIERSSLTV---HQRIHTGEKPYKCNECGKAFSQSMNLTVHQRTHTGEKPYQCKECGKAFHKNSSLIQHERIHTGEKPYKCNECGKAFTQSMNLTVHQRTHTGEKPYECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLHQRNHTGEKPYKCNKCGKSFSQSTYLIEH-QRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVHQVIHTGEKPYEC 384 HSP 3 Score: 192.971 bits (489), Expect = 6.198e-56 Identity = 90/201 (44.78%), Postives = 130/201 (64.68%), Query Frame = -2
Query: 51 IHECKECGKTFSSQHQYTLHKRVHNNVRPYLCDVCGKRFIQASHLQAHQRTHTNERPFICDVCGKSFVQSSGLKTHLRSHSQERPYECTVCGKTFTQSGNLKMHVRTHTAEKPYACDQCDKSFAISSNLTQHIKSKHTEERSFSCDVCGRAFHRRSNMVAHQQTHLGEKKFQCGICEKNFSRMDSLKRHLKKHSEAELSKC 653
I+EC +C KTFS H+R+H +PY C+VCGK FI+ S L HQR HT E+P+ C+ CGK+F QS L H R+H+ E+PY+C CGK F ++ +L H R HT EKPY C++C K+F S NLT H ++ HT E+ + C+ CG+AF + +++ HQ++H GEK ++C C K FS+ +L H + H+ + KC
Sbjct: 101 IYECNQCSKTFSQSSSLLKHQRIHTGEKPYKCNVCGKHFIERSSLTVHQRIHTGEKPYKCNECGKAFSQSMNLTVHQRTHTGEKPYQCKECGKAFHKNSSLIQHERIHTGEKPYKCNECGKAFTQSMNLTVHQRT-HTGEKPYECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLHQRNHTGEKPYKC 300 HSP 4 Score: 183.726 bits (465), Expect = 1.673e-52 Identity = 98/237 (41.35%), Postives = 137/237 (57.81%), Query Frame = -2
Query: 51 EKVIETEK-FDCERCGKLFKKKRYLLLHQEKTIC--IHECKECGKTFSSQHQYTLHKRVHNNVRPYLCDVCGKRFIQASHLQAHQRTHTNERPFICDVCGKSFVQSSGLKTHLRSHSQERPYECTVCGKTFTQSGNLKMHVRTHTAEKPYACDQCDKSFAISSNLTQHIKSKHTEERSFSCDVCGRAFHRRSNMVAHQQTHLGEKKFQCGICEKNFSRMDSLKRHLKKHSEAELSKC 752
E++ EK + C CGK F + L +HQ +EC ECGK FS +H+R H +PY C CGK F ++S L HQR HT E+P+ C+ CGKSF QS+ L H R HS +P+EC CGK F+++ +L H R HT EKPY C C K F S+LT H + HT E+ + C+ CG+AF + + ++ HQ+ H GEK ++C C K F + SL H + H+ + +C
Sbjct: 205 ERIHTGEKPYKCNECGKAFTQSMNLTVHQRTHTGEKPYECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLHQRNHTGEKPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVH-QVIHTGEKPYECNECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLTVHQRTHTGEKPYQC 440 HSP 5 Score: 82.0333 bits (201), Expect = 6.760e-17 Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = -2
Query: 48 QASHLQ----AHQRTHTNERPFICDVCG-----KSFVQSSGLKTHLRSHSQERPYECTVCGKTFTQSGNLKMHVRTHTAEKPYACDQCDKSFAISSNLTQHIKSKHTEERSFSCDVCGRAFHRRSNMVAHQQTHLGEKKFQCGICEKNFSRMDSLKRHLKKHSEAELSKCQ 533
Q SHL H+ T T R VCG + Q S L T +RP+ C G+ TQ+ L R +K Y C+QC K+F+ SS+L +H + HT E+ + C+VCG+ F RS++ HQ+ H GEK ++C C K FS+ +L H + H+ + +C+
Sbjct: 25 QDSHLSQVGVTHKETFTEMR-----VCGGNEFERCSSQDSILDTQQSIPMVKRPHNCNSHGEDATQNSELIKTQRMFVGKKIYECNQCSKTFSQSSSLLKHQRI-HTGEKPYKCNVCGKHFIERSSLTVHQRIHTGEKPYKCNECGKAFSQSMNLTVHQRTHTGEKPYQCK 189 The following BLAST results are available for this feature:
BLAST of TCONS_00057065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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