TCONS_00057070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057070
Unique NameTCONS_00057070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057070 ID=TCONS_00057070|Name=TCONS_00057070|organism=Clytia hemisphaerica|type=transcript|length=279bp
CTAGGTAGTGAAAATGTCGCGATTTTTAAATGTATACGTATCCTTTATCA
AACTGAAGTAAAAAAGCTTCGAAAATGTagcaaagaagagaaaaaaacga
cTTTTCTTGTTTTGGATGGTGACATTTTTTGACATACGAGTGCTTGTTTC
CTTTCAATCTAAAAGtacttacaaaaacaaaaatattTGAATGACGCTGG
TGTGACGCAATCTGCAACACGAGGTTTGACCTGCACAGCTCACTGGATTA
AAAATCATGGCACTGGAAGGAACAGAATT
Run BLAST on NCBI

transcript from alignment at scaffold_285:375764..376619+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057070 ID=TCONS_00057070|Name=TCONS_00057070|organism=Clytia hemisphaerica|type=transcript|length=856bp|location=Sequence derived from alignment at scaffold_285:375764..376619+ (Clytia hemisphaerica)
CTAGGTAGTGAAAATGTCGCGATTTTTAAATGTATACGTATCCTTTATCA
AACTGAAGTAAAAAAGCTTCGAAAATGTagcaaagaagagaaaaaaacga
cTTTTCTTGTTTTGGATGGTGACATTTTTTGACATACGAGTGCTTGTTTC
CTTTCAATCTAAAAGtacttacaaaaacaaaaatattgtaaGTATACAAA
GATCAATTACATATTTTTCATTCATCGTGTTTCATCAATGAATAAATCAC
ACAAAACAATTAAGCAGATGTCTAGTCGCAATCCTACAATGAGAAACCAT
GCTTTTTTATTTACCTTGCGATGATAAGTTAATTTCATGAAGTTCTACTA
TCAACTGTTACAAAATGACAAATTCTTTTTGATAGACCGCGAATTTTTCC
TTCTTGTTTTGATAGCTGGACTTATCATTATAATTATACCTCTCTTCCCT
TATCTTCTCCCTGACAAAAAACCCCCACACCCCAGATTATTTTCTTACTG
TGAATTAAAGTTCTTTCCTTCCTAGAAAACTTCTCTTTTGCTATGTACCC
CCTCTTCTTAGGGAGAGTGGGTGCAATGAATGGGGCACGCCCACTTTTGT
TACCCCCGCGCCGCGAGAATTTTCGAACGTCAGAAAATTCGAATTGTGCT
TTAAATATAGAAACATGACATTCGAATTGATCTAAATAAAGTCGctcgtt
ttcttcatttttttgctttttcgaATGTTGTGATTCACGTtcgattgtta
tttttttgatgTAGTGAATGACGCTGGTGTGACGCAATCTGCAACACGAG
GTTTGACCTGCACAGCTCACTGGATTAAAAATCATGGCACTGGAAGGAAC
AGAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035953XLOC_035953Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057070-exon-scaffold_285-1491911889:375764..375950TCONS_00057070-exon-scaffold_285-1491911889:375764..375950Clytia hemisphaericaexon
TCONS_00057070-exon-scaffold_285-1510915933:375764..375950TCONS_00057070-exon-scaffold_285-1510915933:375764..375950Clytia hemisphaericaexon
TCONS_00057070-exon-scaffold_285-1575043694:375764..375950TCONS_00057070-exon-scaffold_285-1575043694:375764..375950Clytia hemisphaericaexon
TCONS_00057070-exon-scaffold_285-1491911889:376528..376619TCONS_00057070-exon-scaffold_285-1491911889:376528..376619Clytia hemisphaericaexon
TCONS_00057070-exon-scaffold_285-1510915933:376528..376619TCONS_00057070-exon-scaffold_285-1510915933:376528..376619Clytia hemisphaericaexon
TCONS_00057070-exon-scaffold_285-1575043694:376528..376619TCONS_00057070-exon-scaffold_285-1575043694:376528..376619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:375764..376619 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.500914	0.97694	0.56716	0	0	0	0	0	0	0	0.507493	0	0	0.345971	0	0.305243	1.1281	0	0	0	0	0	0.574338	0.522157	1.61343	0.479982	0	0	0.555975	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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