TCONS_00057082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057082
Unique NameTCONS_00057082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057082 ID=TCONS_00057082|Name=TCONS_00057082|organism=Clytia hemisphaerica|type=transcript|length=338bp
CGTCATTCCCGACCATCCACGGCATTAAATCAGAACCTATGGAAGATCAA
GACTTTCCACAAGGTTGCCAAGAAACTACAATTCGATTGCCTAAGAATGA
AGTCGATGACCTAGAAGATGTTAAGCCGACTTTGACTTTAAACATGAAGG
ACACAaatagaaaatcttcaaaatcatcTTCGAAGAAAAGACTTGACAAT
AAAGAGTTCAAATCATTGTTGGAAAGATCAAGATTATACCCACCATTTCA
GCAGCGTTTTTGCCAGATGCAATCGATGGCTATGAATCCAGCTCAACAAT
ATTCATTCCCAACCAACAACAACCAACAAAATCACAGC
Run BLAST on NCBI

transcript from alignment at scaffold_285:572985..574316+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057082 ID=TCONS_00057082|Name=TCONS_00057082|organism=Clytia hemisphaerica|type=transcript|length=1332bp|location=Sequence derived from alignment at scaffold_285:572985..574316+ (Clytia hemisphaerica)
CGTCATTCCCGACCATCCACGGCATTAAATCAGAACCTATGGAAGATCAA
GACTTTCCACAAGGTTGCCAAGAAACTACAATTCGATTGCCTAAGAATGA
AGTCGATGACCTAGAAGATGTTAAGCCGACTTTGACTTTAAACATGAAGG
ACACAaatagaaaatcttcaaaatcatcTTCGAAGAAAAGACTTGACAAT
AGTAAGTTTTTTTGAATCTTCTATTCTCAACGCTACGCCGTattgttgga
aaattgcaaatgaaTAATATCAAAGTTTCAAAAGGGCAAAGTGTTTTatg
gattttaatttttattgtcTTCATACAAGTCATACAAGACTTCAGTAAGT
CATGCGCTGTTGtttattaaaaatgtttttttcccaaTCAACCATGAAAG
ATTCAACCTAAATTTAACATGTAATACGTACCTAAAGTCGAAgcctgaag
caaaaatttgtatttttgagcctctctaaaaatggcattcttagattcag
tttggaaattttatgatggtgatattttcagcatatttttaattatttgg
ccaaattcatataaaaaaaaaagcgtgccATGATGGAAAATTGAAAGTGA
GTAAtgtaaaataaaagttttgatgGGGAAAGTTTTGTATTGTatggatt
ttattttttcattaccttaatacaaaacttttgaatttatgAAATTAGTC
ACTTTAACGCTCTTCCCGGCTAAACCACCAATTCAATTTTGTTATCTATC
TAGAAGAGTTCAAATCATTGTTGGAAAGATCAAGATTATACCCACCATTT
CAGCAGGTATGAAAATAATAGTCCAATCCCTAAAAATACTTTGGAAAATG
TTGCTCCCTTCTTTCTCcaagaattaaaaaaaggtcGATATCTTTTACGT
GGATACCCAGatgacacacaacgttatttcaacgttaatctaaaaTTCAC
AGCGTCCATACAACGTtagaaacaacgttttgtgccagctggtaGCTAAG
TAACAGAGTAGCCTAGTAGTTTTAAATTGTTTCCACGTGGTCTACAGCTA
GGCTGCCTAAGATTTTAAAACCTAAGATAGGAAAAAACGGGTATTCGAAC
TGAGGACCCCTGTCTCATGTTGCTGTCGCCTTAGACCATGCACTCGGTAT
TCGCTCCTTAAAAAGCATTCTCTTCATATGCCAGTATCTTAAGAGAATTA
TCCAAAACTTTCAGAATAaagcatttttcaaatattttccagTTACAGCG
TTTTTGCCAGATGCAATCGATGGCTATGAATCCAGCTCAACAATATTCAT
TCCCAACCAACAACAACCAACAAAATCACAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035959XLOC_035959Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057082-exon-scaffold_285-1491911889:572985..573185TCONS_00057082-exon-scaffold_285-1491911889:572985..573185Clytia hemisphaericaexon
TCONS_00057082-exon-scaffold_285-1510915933:572985..573185TCONS_00057082-exon-scaffold_285-1510915933:572985..573185Clytia hemisphaericaexon
TCONS_00057082-exon-scaffold_285-1575043694:572985..573185TCONS_00057082-exon-scaffold_285-1575043694:572985..573185Clytia hemisphaericaexon
TCONS_00057082-exon-scaffold_285-1491911889:573738..573790TCONS_00057082-exon-scaffold_285-1491911889:573738..573790Clytia hemisphaericaexon
TCONS_00057082-exon-scaffold_285-1510915933:573738..573790TCONS_00057082-exon-scaffold_285-1510915933:573738..573790Clytia hemisphaericaexon
TCONS_00057082-exon-scaffold_285-1575043694:573738..573790TCONS_00057082-exon-scaffold_285-1575043694:573738..573790Clytia hemisphaericaexon
TCONS_00057082-exon-scaffold_285-1491911889:574233..574316TCONS_00057082-exon-scaffold_285-1491911889:574233..574316Clytia hemisphaericaexon
TCONS_00057082-exon-scaffold_285-1510915933:574233..574316TCONS_00057082-exon-scaffold_285-1510915933:574233..574316Clytia hemisphaericaexon
TCONS_00057082-exon-scaffold_285-1575043694:574233..574316TCONS_00057082-exon-scaffold_285-1575043694:574233..574316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:572985..574316 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.503582	0.18803	0	1.13574	0.527716	0.318213	0	2.9608	0.137224	0	2.03978	2.77413	4.46096	5.27672	0	0.990733	0	3.69882	1.12195	1.50786	2.08934	4.616	4.10013	7.2296	0	1.85218	0.169368	0.337755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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