TCONS_00057089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057089
Unique NameTCONS_00057089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057089 ID=TCONS_00057089|Name=TCONS_00057089|organism=Clytia hemisphaerica|type=transcript|length=1301bp
TTATTACAACTTCTAACTTAGGCTTTATATCTTTGCGGGGGTCAAGGAAG
AAATTTCTGGAATATTTCGAATTCTTTGGCCCTTTTCAAACAAGACTTCA
CGTGCACAAGACAGATTTTCCCCATCAGATCAATTCGTATCCAAGATTCA
ACTATGGCATCTCCATCTCCATCAAAGAAAACCAAAAAAGATTACATCAT
TAATGTCAGTTTTACAAGAAATTCCCATTTGGGCCAGAGTATCAGTGCTT
GGCAGAATCTATGACCTACAAGACACGTCCTCATCTTCAAAACAAAAGAC
AAAACTTAGAGAAGCCAAAATCATTGACCAATCAAATGTTTCCCGTCAGA
TAACTTTCTTTGACCACTTTGATGAAGTTGATGAAGgGAAAGTATACAAG
ATTACAAATGTAATGGTTGCAAAGTATGATAAGAAGAAAGTCCTCAAAGT
TTCGGAAAATTCTTCAATCCAAGAAATTCATGATAAACCTGAAATTCCAA
AACCAGCAACAACCACTCGCTCATCTGAAAAATGTTCCGGTATAGTTTGT
ATGGTCGACCCGAAATCCTTGAATACAAGATTTTTATGCGGTAAATGTGA
AAAAGAAACACAACGCAATCATGATAACTTGTTTTATTGTTGCAATAACA
TATCAATCGAGTCAGAAATGGTGAAGAAAGAAGACGTCATTTTCATGGTG
AAATCGTCAGTCGGTGAAGAAAGTCTTAAAATTCAATTAAATTCGAAAAA
GCATCTGCTGGAAAGTATGGTTGGTGTGCCGACAACAAATCCTTTATTTC
TCAAGTTATTTATGGGATCCAAAGTTGATGTTACTTATAAAATGGTTTCA
ACTGTGAAAGATGTTGTCGACATATCGGATTGTGCTCAACAATCAACATC
TAAATTGGCTCCCCAAAACATTGACGAACAGCCTTCAACTGACTCTATAA
ATACAGAAAGTAACTGAACTTTTTTGGATTACGtttcagtttgatttttt
catttacttgTTTTAGTTATTATGTATGAGTGAACCTTGTAAATCTTTTG
AAACTCTACTCTAAACCCTTAAGTTTGATGCCGATTTCAGTTTTGAAAAT
CTGAATAACAACCAAAATTATGTTCAAGTGTGAGCTATTCTCAAACAAAT
AACACTTTATTCTTTACTGAGatatttaaaattcaaaaccaaCAATGTAA
ATAGATTTCAGCTTTTTGTTTTTACAGTATTTCTAATACTAGCATTTTGT
TATGATATCTTTTGTTGTTGTGCTGGCCACAACTCCATGAATGTATTTTT
T
Run BLAST on NCBI

transcript from alignment at scaffold_285:624334..628178+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057089 ID=TCONS_00057089|Name=TCONS_00057089|organism=Clytia hemisphaerica|type=transcript|length=3845bp|location=Sequence derived from alignment at scaffold_285:624334..628178+ (Clytia hemisphaerica)
TTATTACAACTTCTAACTTAGGCTTTATATCTTTGCGGGGGTCAAGGAAG
AAATTTCTGGAATATTTCGAATTCTTTGGCCCTTTTCAAACAAGACTTCA
CGTGCACAAGACAGATTTTCCCCATCAGATCAATTCGTATCCAAGGtgag
tttttttaaaaatatcttatTGATACTGCCTAATTGTCTTGAAATGTTGA
AGTACTTGACAATATCTGTATTTAACTCAACTTCCCAGTATGCAAATTGG
GCATGAGCGATTAAAATGGACTCAAATTCATCGAGAAATCACTTTATTTT
AGGTGTAAGAATTTCTTCCATCTGCAGGTATCCAATGTGCATGTAATTCT
TTACACAgcactgaaaaaaattttttgtttgtttatattaGATTCAACTA
TGGCATCTCCATCTCCATCAAAGAAAACCAAAAAAGGTATTTCTCAAACA
TTGACATTACATTCACCTGCATTTACATCTCATCCAGTCTGGAAGGAAGG
AAATGTTTATGCCAGAAATTTCCGTGCTATAGCCTTGGTATAAAAGCATC
AGAAATCGTCTGCCGGAGATATCCGGTGGGCTCTCCAGATTGGCATGTCA
TCAATACACATCAGTGCTACTAGATTAGTCCTCCCTACTTTCAGTCCTTA
CCTTACCTTCACAAGGCGGTAACCTCTCTTCAGTCCTTACCTTACCTTCA
TAAGGCGGTTAtcaaaatatctttgtttcgtGTTGCCCGATTGACTCTTG
AAAATTGAGTAAATTTGAGTCAGTAATGTCAGACTTTTTGTGACAATGAC
ttttcctttgctcaaaaattttacttttgctAATATTAATTGTgagcaat
acacctttcccgtattTCAGATTTCCCGGAAAAAGACCTGTTCTCCACCA
TTGTGATATTTTTTCACGGGAGGTAAACAAACTCGATTTTGCCTACGTTT
GCTTAGGGGAAAGCAGTTTTTGTCTTCTATCTTTTGATGCACAAAttcgt
ttttaaaaaaatttggagGGTAGTATTGTATCATGAATAGTAAAAACATA
CCATAGTTTGAAGAAATTCTATACGATGGAAGTTGAGAAAAGTCCAAAAA
ACCACCTTTTTCTAAGCAATCGCCAGCAAAAATAGGTTTGTTTACCTCCC
GTCCAAGAAACGATGGAGAGCCAAAAAATATGCGCGCGCATATTTTTTTT
GAAATACGGGAAAGGTGTATTGCCGCCTAAATTTGACAATAAATCATTGG
TATAACTCAAAGTTTTCAAGCTAAAAGGACTTTCGCAATACATTAACTGG
TAAATTAAAATCTTTTTATTTTTAGATCTAGTTAACTTGGAAGGCTACGT
CAATTTTGTGGGTTCACCAAGAAAAGCCAAGCAAAAGGCTGCCGACAAAA
AGGAAATCGAGTTCTTTGAAGTATCAGTCAATTGTGAAAACAATACGGTC
CGTGCTGTTTGTTATGATCTCGATCGCAGACCTTTGTTGGAAAAATTCAA
CAAAGAAAGTAACTCCTGCTGCTTGCTGAATGCAGAAAAATCAGATAATG
ATGTCATTATTCTAGATGATACAATTATTAAACAAAAGAAGGTTGCTTTT
GATAACAAAACTTTTGAACCACAGATTACATCATTAATGTCAGTTTTACA
AGAAATTCCCATTTGGGCCAGAGTATCAGTGCTTGGCAGAATCTATGACC
TACAAGACACGTCCTCATCTTCAAAACAAAAGACAAAACTTAGAGAAGCC
AAAATCATTGACCAATCAAATGTTTCCCGTCAGATAACTTTCTTTGACCA
CTTTGATGAAGTTGATGAAGGTAAGGATGTTTTAAGAATTTTTAATTGTT
TCTATTCATTACCATCCTCTCCTGACAACTTAATTCCCTGGTGAACTCTC
AAAAGTTTGATTGGAACAGTGCGAATTTTTTAATATGCTTAAATTTGATT
TAGCTCCCCCTGACACGAGCTTTATTGGGCAGTTCCAGAAAAAAACCATT
ACCCCCCTGTGGACAACAGGGTTTTTTGGAATTTTTTGTCACTTGGAAAT
CCTGAGAAATTTGAGAAAGGTCTCGGAAAATCCATTATTTTTCTTCATTA
TTTTGTCATCCGTATCGGAAAATCCTGGAAAATCCATAAAATTTGCTCTA
TTTTCTTGCAAAGTATCGGAAAATCCAAGATTTTTCCTTAAAAAATCTTG
AATGTTACGGAAATCCTTAAGTTtctcaaaagtaaattgttacgGAAAAT
CCATGTCGTCCACAGGGGGGTAACGGACTATAACTGGAACCGCCCATTGG
TCACATATGGTGAAATACATTACGTAATCTAACTACATGTTTGTGAATTT
GACCCTCAACAGTACAGCCACTTTTCATTAATTTAGTTACGTTGTTAAGT
AAAGTGAGGTTAAATTTAATTACACTTTGCGCTAGCTTGTGGTAAACCAT
TTTAGCATGGCTTCAAATGATAAAAGTGGTGCGCCTCTCATTATTGTGGC
TTTTTTTTCGACCAAAAGCAAGTATTTAATTCATATGACGGCCATCGAAA
AATGTTCTATTCGTGTCACCCACCCGCAtcatttttcgctgattttccaG
TGCGGAGATTCCGGTGAGGCAAAATccgggaaaagcaatttgttcttata
aggtATAGCTGTTTTCTTGATCGCTCTTGGAGGCCATAAAAAATTGTATT
GTTTGCCGCAATTTTGAAATACCTGGGAATTTTTCCACCGCCTGTCCACC
CGCATGAATTTTTAACATCCGCTGTGACGCTAACAGagcaatttttcgat
ggccgtATGCGCAATGTGAACTATATTTATTTTGCCTAAATATAGCGCAC
AAGTTAGAAAATAAATGAGTTTGAGAAAATAAATGAGTTTGTTTTTCATG
CAActtaactttctttttcttttaatttaggGAAAGTATACAAGATTACA
AATGTAATGGTTGCAAAGTATGATAAGAAGAAAGTCCTCAAAGTTTCGGA
AAATTCTTCAATCCAAGAAATTCATGATAAACCTGAAATTCCAAAACCAG
CAACAACCACTCGCTCATCTGAAAAATGTTCCGGTATAGTTTGTATGGTC
GACCCGAAATCCTTGAATACAAGATTTTTATGCGGTAAATGTGAAAAAGA
AACACAACGCAATCATGATAACTTGTTTTATTGTTGCAATAACATATCAA
TCGAGTCAGAAATGGTGAAGAAAGAAGACGTCATTTTCATGGTGAAATCG
TCAGTCGGTGAAGAAAGTCTTAAAATTCAATTAAATTCGAAAAAGCATCT
GCTGGAAAGTATGGTTGGTGTGCCGACAACAAATCCTTTATTTCTCAAGT
TATTTATGGGATCCAAAGTTGATGTTACTTATAAAATGGTTTCAACTGTG
AAAGATGTTGTCGACATATCGGATTGTGCTCAACAATCAACATCTAAATT
GGCTCCCCAAAACATTGACGAACAGCCTTCAACTGACTCTATAAATACAG
AAAGTAACTGAACTTTTTTGGATTACGtttcagtttgattttttcattta
cttgTTTTAGTTATTATGTATGAGTGAACCTTGTAAATCTTTTGAAACTC
TACTCTAAACCCTTAAGTTTGATGCCGATTTCAGTTTTGAAAATCTGAAT
AACAACCAAAATTATGTTCAAGTGTGAGCTATTCTCAAACAAATAACACT
TTATTCTTTACTGAGatatttaaaattcaaaaccaaCAATGTAAATAGAT
TTCAGCTTTTTGTTTTTACAGTATTTCTAATACTAGCATTTTGTTATGAT
ATCTTTTGTTGTTGTGCTGGCCACAACTCCATGAATGTATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035963XLOC_035963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057089-exon-scaffold_285-1491911889:624334..624478TCONS_00057089-exon-scaffold_285-1491911889:624334..624478Clytia hemisphaericaexon
TCONS_00057089-exon-scaffold_285-1510915933:624334..624478TCONS_00057089-exon-scaffold_285-1510915933:624334..624478Clytia hemisphaericaexon
TCONS_00057089-exon-scaffold_285-1575043694:624334..624478TCONS_00057089-exon-scaffold_285-1575043694:624334..624478Clytia hemisphaericaexon
TCONS_00057089-exon-scaffold_285-1491911889:624725..624769TCONS_00057089-exon-scaffold_285-1491911889:624725..624769Clytia hemisphaericaexon
TCONS_00057089-exon-scaffold_285-1510915933:624725..624769TCONS_00057089-exon-scaffold_285-1510915933:624725..624769Clytia hemisphaericaexon
TCONS_00057089-exon-scaffold_285-1575043694:624725..624769TCONS_00057089-exon-scaffold_285-1575043694:624725..624769Clytia hemisphaericaexon
TCONS_00057089-exon-scaffold_285-1491911889:625958..626153TCONS_00057089-exon-scaffold_285-1491911889:625958..626153Clytia hemisphaericaexon
TCONS_00057089-exon-scaffold_285-1510915933:625958..626153TCONS_00057089-exon-scaffold_285-1510915933:625958..626153Clytia hemisphaericaexon
TCONS_00057089-exon-scaffold_285-1575043694:625958..626153TCONS_00057089-exon-scaffold_285-1575043694:625958..626153Clytia hemisphaericaexon
TCONS_00057089-exon-scaffold_285-1491911889:627264..628178TCONS_00057089-exon-scaffold_285-1491911889:627264..628178Clytia hemisphaericaexon
TCONS_00057089-exon-scaffold_285-1510915933:627264..628178TCONS_00057089-exon-scaffold_285-1510915933:627264..628178Clytia hemisphaericaexon
TCONS_00057089-exon-scaffold_285-1575043694:627264..628178TCONS_00057089-exon-scaffold_285-1575043694:627264..628178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:624334..628178 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09193	0.831771	0	0	3.11471	0.408603	4.20577	4.82877	4.66397	2.95458	1.89576	1.99922	6.57742	4.66057	2.9042	3.90283	1.68116	3.35164	12.3431	11.275	14.6496	12.3178	4.57314	3.89891	3.43774	3.77105	3.27442	4.64254	2.92281	2.34071
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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