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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057099 ID=TCONS_00057099|Name=TCONS_00057099|organism=Clytia hemisphaerica|type=transcript|length=4126bpRun BLAST on NCBI protein sequence of TCONS_00057099-protein >TCONS_00057099-protein ID=TCONS_00057099-protein|Name=TCONS_00057099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1292bp MESQQIDQQVTAFHGPTLHDQSQPTYHDWAENNEDPEFTSQNEISGIDSPRun BLAST on NCBI transcript from alignment at scaffold_285:35803..102718- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057099 ID=TCONS_00057099|Name=TCONS_00057099|organism=Clytia hemisphaerica|type=transcript|length=66916bp|location=Sequence derived from alignment at scaffold_285:35803..102718- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_285:35803..102718- >TCONS_00057099 ID=TCONS_00057099|Name=TCONS_00057099|organism=Clytia hemisphaerica|type=CDS|length=85272bp|location=Sequence derived from alignment at scaffold_285:35803..102718- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057099 vs. Swiss-Prot (Human)
Match: MAST2 (Microtubule-associated serine/threonine-protein kinase 2 OS=Homo sapiens GN=MAST2 PE=1 SV=2) HSP 1 Score: 592.038 bits (1525), Expect = 0.000e+0 Identity = 355/777 (45.69%), Postives = 508/777 (65.38%), Query Frame = 3
Query: 1452 GGRKSSLFGR---ATSYDPHASFSPIRLESTEPGSNLVRMRTNTLGXXXXXXXXXXXXIAI-RKFSTCGIXXXXXXXXXXXXXXXXXXXXXXXXNDSESSGKHVSPVSYSAQSAQSAPIGFHSNKSFQS-GRRWSVAS---SGYSTNTPCSSGLSSRTSSQEKLSQLMF----DDPPFCRQYSQDSTYSDIDDDVLIRARSPKAFRGRSRSLSPTRN----ENEIAILTNIYKDRFPKAKQQMEEKLEDFIEKYSDENVENKPSDAAISFVSHQMVELARTVLKVSLNPGGPINSEFFYTISDSVEKLLFGVKTKTTSKELDHINKVASDLLMILSRPARLLECLEFNPAEFYTQLEFEEQCLTQHKEQNTDGVEIEMGDYIRNKLGIXXXXXXXXXXXXX------XXXXXXXANRKQSILVE--PKEEDFTYIKLISNGAYGSVYLVKHKTSRQRYAXXXXXXXXXXXXNQVNQVFTERDIMTFAQNPFVVTLFCTFVTKKYLCMVMEFVEGGDCASLLKNITVFPFDLARRYFAETLLAVEYIHDYGIIHRDLKPDNLLITAMGHIKLADFGLSKVGLINMTTNI----CEETVQQFKDVQVFGTPDYIAPEVILRKGYGPDVDYWSLGIILYEFLIGVTPFFGETVSEVFDMILTGEIEWPEGDEALPDEATNIIKHLLVRQATERLGANGAADVRAHSFFQNVNWNSLLREKAEFIPVLDNEEDTSYFDTREDRYNHXXXXXXXXXXXXXXXXXXX-XTCSPRFSRLISTHE 3695
G SSL G+ S H+S + +S+ SNLVRMR +LG S PSL++ ++++ R+ S C S R+ + + P + +S P+ + +AP F + ++ GRRWS+AS SGY TNTP S+ +SS SSQEKL QL F D+ F ++ ST S D++ R A R RSRSLSP R+ ++EI ++ ++YK+RFPKA QMEE+L +FI + ++V +D A+SF+ HQ++E+AR L S + G I S++FY + D++EKLL ++ S E+ + ++ L++I++RPARLLECLEF+P EFY LE E H ++ G++ ++ YI ++LG+ EE D+ S+ + P EEDF IKLISNGAYG+V+LV+HK++RQR+AMKK++K +L+ +NQ+ Q F ERDI+TFA+NPFVV++FC+F TK++LCMVME+VEGGDCA+LLKNI P D+ R YFAET+LA+EY+H+YGI+HRDLKPDNLLIT+MGHIKL DFGLSK+GL+++TTN+ E+ ++F D QV GTP+YIAPEVILR+GYG VD+W++GIILYEFL+G PFFG+T E+F +++ EI WPEGDEALP +A ++ LL + ERLG A +V+ H FF ++W LLR+KAEFIP L++E+DTSYFDTR +RY+H+ S+++EE ++ + S+CSPRF+++ S+ E
Sbjct: 101 GNLASSLSGKQLLPLSSSVHSSVGQVTWQSSGEASNLVRMRNQSLGQSAPSLTAGLKELSLPRRGSFCRTSNRKSLIVTSSTSPTLPRPHSPLHGHTGNS-----PLDSPRNFSPNAPAHFSFVPARRTDGRRWSLASLPSSGYGTNTPSST-VSSSCSSQEKLHQLPFQPTADELHFLTKHF--STESVPDEE----GRQSPAMRPRSRSLSPGRSPVSFDSEIIMMNHVYKERFPKATAQMEERLAEFISSNTPDSVLPL-ADGALSFIHHQVIEMARDCLDKSRS--GLITSQYFYELQDNLEKLLQDAHERSESSEVAFVMQLVKKLMIIIARPARLLECLEFDPEEFYHLLEAAEG----HAKEG-QGIKCDIPRYIVSQLGLTRDPLEEMAQLSSCDSPDTPETDDSIEGHGASLPSKKTPSEEDFETIKLISNGAYGAVFLVRHKSTRQRFAMKKINKQNLILRNQIQQAFVERDILTFAENPFVVSMFCSFDTKRHLCMVMEYVEGGDCATLLKNIGALPVDMVRLYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDAREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDEIVWPEGDEALPPDAQDLTSKLLHQNPLERLGTGSAYEVKQHPFFTGLDWTGLLRQKAEFIPQLESEDDTSYFDTRSERYHHMDSEDEEEVSEDGCLEIRQFSSCSPRFNKVYSSME 857 The following BLAST results are available for this feature:
BLAST of TCONS_00057099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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