TCONS_00057102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057102
Unique NameTCONS_00057102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057102 ID=TCONS_00057102|Name=TCONS_00057102|organism=Clytia hemisphaerica|type=transcript|length=418bp
CAATCTGATACTGGAGACACTGAATGGAATATGATTCATCTCGATCGAAA
TCCAAGTAATTTGACGTAGTCAACGCTAGGGGTTGGAACTAGTTACAACA
TAGAGCAGTGCATTCAAAAGGTAAATGAGCAAATTGAAGGTGATATCAAA
AGAATCCAGCCGGGATGATACGTGTCGCCTCTATTATTAATTCGGACTCA
CCACATGAAAATATATCACATTCTTCGCAACAAACCTATCGGACTTTTTT
ACTACTCTACGTGTAGAGACGATATTTCCAAACGTTTTGACATGTCGAGA
TTTTCCAATTCCCGATCTAAACGAGGTGATCTACTCTCCCTATCGAACCG
GTTTGATGGCAGACAAAATCAATTTCCACACTGATATAAATTCTCTAACA
ACAAATTTGGAGCAAACA
Run BLAST on NCBI

transcript from alignment at scaffold_285:206903..211124-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057102 ID=TCONS_00057102|Name=TCONS_00057102|organism=Clytia hemisphaerica|type=transcript|length=4222bp|location=Sequence derived from alignment at scaffold_285:206903..211124- (Clytia hemisphaerica)
CAATCTGATACTGGAGACACTGAATGGAATATGATTCATCTCGATCGAAA
TCCAAGTAATTTGACGTAGTCAACGCTAGGGGTTGGAACTAGTTACAACA
TAGAGCAGTGCATTCAAAAGGTAAATGAGCAAATTGAAGGTGATATCAAA
AGAATCCAGCCGGGATGATACGTGTCGCCTCTATTATTAAGGGCTCTGAC
TATAGTCCAAAAATAGATTTTGTTATTTGAACATAAAAGTTATATTTCAG
GTTCCTTAGCACTTTCAACAAAGAATTGCCTTTATAAATTGCTTTTTAAT
CGAATCCCTTAAGAGTAATTAAGAATTTAATAGCAAAAATGACGTTATGA
ACTTTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCTTTTACAAAAAGTGCTTAGTTTTAATGGG
TAATTAACTTTTTTGTTTCAAAATTTCTTTACACTGTCCGCAAAGAATTG
AACTATTTCATATTTTGCGGAAAATTTTTCTAAAAAGATGTGTCAAATGT
TATGACTGTTTTTTTTAAGCAAAATCCAGATGAAAAATTAATGAAAAACC
ACTATTTTGAAGATTTCGAGACAAAGAAGTATTTACAAAAATTTTCCGCA
AAAATTTTTATTGTTCGGTAAAAGATACACCATCTACTGCGAAAAAATTT
TAAAAATGTTTTTTCTTCGCCGAATCTAAGCTCTTCAAAGTTGAAATACT
CTTCCTCGTAAAAGTCTTCATTTTCTTCTTCATCAAATTTTTTCAATGCA
ATTTTTAAATTTTCAGNATTATTTTTCACAATTGGAGATTAGTTTTGTTT
TTCTCTCTAAATATTTTGCTTATTTCAGACTTATGAAGTATCAATCTGAT
ACTGGAGACACTGAATGGAATATGATTCATCCCGATCGAAATCCAAGTAA
TTTGACGTAGTCAACGCTAGGGGTTGGAACTAGTTACAACATAGAGCAGT
GTATTCAAAAGGTAAATGAGCAAATTGAAGGTGATATCAAAAGAATCCAG
CCGGGATGATACGTGTCGCCTCTATTATTAAGTGAGTTATTTTCTTATTT
TCAAAAATTTATAAAGTAAAAAATGTTAGTATGTTTTATTTTTGAAAAGC
CATCTTGTAATGTTTTGAGCATCAGTTGCAACTAGGATATACACTCAATA
TTGCAAGGACTAAGTGAAGCCTTCATATATGTGACTTTATCCACAGGGGA
GGTACTTAGGCAAAATTGGATACTGTGACGTGCCGCTGTTCACTGTCTCT
TTTCTCGGTTATTATGGATAATTCTCAAGGTGAGAATTAGAATTTTGGGC
AATTTATCACCGACCTAGATCAATGCAACAAATTAAAAACAATGTCATTT
TAACTAATTTTCATAACTTTATTTTTCAGTTCGGACTCACCACATGAAAA
TATATCACATTCTTCGCAACAAACCTATCGGACTTTTTTACTACTCTACG
TGTAGAGACGATATTTCCAAACGTTTTGACATGTCGAGATTTTCCAATTC
CCGATCTAAACGAGGTGATCTACTCTCCCTATCGAACCGGTTTGATGGCA
GACAAAATCAATTTCCACACTGATATAAATTCTCTAACAACAAGTAAGTT
TCTTATGCTTTTTTTGTTGAGTTTAAGCAAAAGGGGTAGGAAATTCGTTC
ACAGAGGGTATTACAGCAGACAAACAAACACTACACCCCTGTGTCATAGA
CCCAGCCCCACTGAAAAATTTGGCAAAAATTTCGTCCCCGGTGGAAAAAT
ACCCTGGTATTTCAGCCCCACTGGGAAATTGACTTTGATTTCATACCCAT
TCCAAATTCAATGTTAAAAAATTGCACTCCAAAATTTCTATCCCCATTGA
GATTTCAAAAGGAATTCTTATTCCCACCACTGAGGAAAAAGTTCCACCGG
GGCTGTGAAACAGGGTTGTAACACTTATTCGCAATGGGTTATGATCAATT
AGGAAACGCTTTTACTATCTTTATTTACCATTTTTCGGAAATACTTTTCT
GAGTATTTGGGGTATTTTTGGCAGTCAGAAATCTTTATTAAAAAAATCAA
AAATTTATGTTTTCGGTGCTTTTGAAACATTTTTATTTCAAAATTACTGA
AAAGCTTTTCTTCTCAGCCATATTTTCAAAAATTTAGATTTAAAATTTGG
TTTTTAATTTGTCACTACTTTGTGACAACAAAATTTTGAGGTACACAGCA
ATTTTCAAGAGTTTAGCGTCATTGTTATGAAAGCTTGCACAGCCTTCAAT
CTAAAAGTTCCTTCTTTTTTGTAATTTAATTACTCAATGCTTAATTTTCA
TTAAAGGGTTTTATCATTTGGGGTAAGAAATCTTATCCCCTCAAGGTTTG
AGGAAGCCAAAAAGCATCCTAAGCGTCTTTAGAGTAGGTTATAAAAAAAT
TCTGAGTGACTTCTCAGTCCTGACACTAGCATCAACACTTTGGTCAGACG
ATAGTGTTTCACTAAAGTTTGGCTTAAGGGCTGAGGTGAAGACAGGTGAA
GGCTAAAATTGCCCACGTGAGGAGGTTTTCCTCCTCCGTGGTTCATTTGG
AAATTCCCTTGGGAGTTTAGAGAACAATAGAGTAATTATCTGAAACAATG
CATAAGTGATGGTGCTCAGGTTTTTTCTCTTTTTATAGGAAGATAAATAA
CACTCTGTTAATCTTTTTGATTTAAAGGTTTTATTTTTACATGAGTTTTC
TCGTTTCATATTAGACGCGTATTTCATATCGGGACAGTGTCTTCCTATTA
TATGTTATACTGATATAAGCAAAAAATGTTTTCTTTTCCTCTTTTCTGTG
ACGTCTGTGTCAATCCAATGCGAAAAAGCTTGTAATTTAAAATTTATTTA
GTAGTTAGCCCGAAATATTCACATAAACCCAACATTACCTAAATTTTTGA
ACACATAAAGGACTGTCTTTTATTGTCTCTTTGAAGCCAGCTTTGTTTCC
ACCTTTTAAATTCGTCATTTATAAGCCGAACATATAAAACTCCGTTACTA
TTTGTTTCATTCAATATTGCTTTAAAAACTTTCATACAGCTTAAGGGCTC
TGACCATAGTCCAAAAATTGATTGTGGTATTTGAACATAAAAGTTATATT
TCAGGTTCCTTAACACTTCTAACAAAGAATTGCCTTTATAAATTACTTTT
AAATCGAATCCCTTAAGAGTAATTAAGAATTTAATTGCAAAAATGACGTT
ATGAACTTTAAAAAGATGTTAATAATATGTTGCATCACCCTCTTTTACAA
AAAGTGCTTAGTTTTAATGGGTAATGATCTTTTTTGTTTCAAAATTTTTT
TACACTGTCCGCAAAGAATTGAACTATTTTAAATTTTGCGGAAAATTTTT
CTAAAAAGATTTGTCAAAAGTTTTGACTGTTTTTTTAAGCAAAATCCAGA
TGAAGAATTGATGAAAAACCACTGTTTTGAAGATTTCGAGACAAAGAAGC
ATTTACAAAAATCTTCCGCAAAAATTTTTATTGTTCGGTAAAAGATACAC
CATCTACTGCAAAAAAAATTTCAAAATGTTTTTTCTTCGCCAAAACTAAG
CTCTTCAAAGTTGAAATACTCTTCCTCGCAAAAGTCTTCATTTTCTTCTT
CATCAAATTTTTTCAATGCAATTTTTGAATTTTCAGATTCAGGAATAGTT
TGTCTAACAGAAAATGTATAACATGCCATAGTTTTGTTGGTTACATCTGT
CAGAAAACACATTTTAAACACGGCAATTATGAAAAATTCACTATGGCCAG
AGCCCTTAAAAATTACTTGTTTATTTACGAAGAAAGCTTCTCAAACTTGC
TTTAAAGTTTGCACGGAGGTGTGCCGCTAAAGTTCGTGTTACTCGTTTTT
TGGAAAAAGTGACCCCCGAATGGGACTGAAATTCCAAATCTCTCTCATAT
GTAACATCCTAATCAAGCTTTAATCGAGTTTGTAAAACACAAGGACGGAG
TAACTCTCGGACGGGAATTTTAATACACACCGATAATATTCCTTATATCA
AAACATATTAGAAGGGATGCATGCAGCCTGTTTCATCTTGTACACTTTCT
TATTATAGATTTGGAGCAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035969XLOC_035969Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057102-exon-scaffold_285-1575043694:211005..211124TCONS_00057102-exon-scaffold_285-1575043694:211005..211124Clytia hemisphaericaexon
TCONS_00057102-exon-scaffold_285-1575043694:209944..210013TCONS_00057102-exon-scaffold_285-1575043694:209944..210013Clytia hemisphaericaexon
TCONS_00057102-exon-scaffold_285-1575043694:209382..209595TCONS_00057102-exon-scaffold_285-1575043694:209382..209595Clytia hemisphaericaexon
TCONS_00057102-exon-scaffold_285-1575043694:206903..206916TCONS_00057102-exon-scaffold_285-1575043694:206903..206916Clytia hemisphaericaexon
TCONS_00057102-exon-scaffold_285-1510915933:211005..211124TCONS_00057102-exon-scaffold_285-1510915933:211005..211124Clytia hemisphaericaexon
TCONS_00057102-exon-scaffold_285-1510915933:209944..210013TCONS_00057102-exon-scaffold_285-1510915933:209944..210013Clytia hemisphaericaexon
TCONS_00057102-exon-scaffold_285-1510915933:209382..209595TCONS_00057102-exon-scaffold_285-1510915933:209382..209595Clytia hemisphaericaexon
TCONS_00057102-exon-scaffold_285-1510915933:206903..206916TCONS_00057102-exon-scaffold_285-1510915933:206903..206916Clytia hemisphaericaexon
TCONS_00057102-exon-scaffold_285-1491911889:211005..211124TCONS_00057102-exon-scaffold_285-1491911889:211005..211124Clytia hemisphaericaexon
TCONS_00057102-exon-scaffold_285-1491911889:209944..210013TCONS_00057102-exon-scaffold_285-1491911889:209944..210013Clytia hemisphaericaexon
TCONS_00057102-exon-scaffold_285-1491911889:209382..209595TCONS_00057102-exon-scaffold_285-1491911889:209382..209595Clytia hemisphaericaexon
TCONS_00057102-exon-scaffold_285-1491911889:206903..206916TCONS_00057102-exon-scaffold_285-1491911889:206903..206916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:206903..211124 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.26052	0.369639	1.98431e-06	0	0	0	0.21824	1.83883	0	0.708737	0	0	0	0	0	0.620645	0	0.261225	0	0	0.492372	0.480323	14.5974	0.00457107	0	0.813282	0.698283	1.49045	6.78273	0.427952
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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