TCONS_00057103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057103
Unique NameTCONS_00057103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057103 ID=TCONS_00057103|Name=TCONS_00057103|organism=Clytia hemisphaerica|type=transcript|length=437bp
TTTCAGACTTATGAAGGGTCAATCTGATACTGGAGACACTGAATGGAATA
TGATTCATCTCGATCGAAATCCAAGTAATTTGACGTAGTCAACGCTAGGG
GTTGGAACTAGTTACAACATAGAGCAGTGCATTCAAAAGGTAAATGAGCA
AATTGAAGGTGATATCAAAAGAATCCAGCCGGGATGATACGTGTCGCCTC
TATTATTAATTCGGACTCACCACATGAAAATATATCACATTCTTCGCAAC
AAACCTATCGGACTTTTTTACTACTCTACGTGTAGAGACGATATTTCCAA
ACGTTTTGACATGTCGAGATTTTCCAATTCCCGATCTAAACGAGGTGATC
TACTCTCCCTATCGAACCGGTTTGATGGCAGACAAAATCAATTTCCACAC
TGATATAAATTCTCTAACAACAAATTTGGAGCAAACA
Run BLAST on NCBI

transcript from alignment at scaffold_285:206903..211143-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057103 ID=TCONS_00057103|Name=TCONS_00057103|organism=Clytia hemisphaerica|type=transcript|length=4241bp|location=Sequence derived from alignment at scaffold_285:206903..211143- (Clytia hemisphaerica)
TTTCAGACTTATGAAGGGTCAATCTGATACTGGAGACACTGAATGGAATA
TGATTCATCTCGATCGAAATCCAAGTAATTTGACGTAGTCAACGCTAGGG
GTTGGAACTAGTTACAACATAGAGCAGTGCATTCAAAAGGTAAATGAGCA
AATTGAAGGTGATATCAAAAGAATCCAGCCGGGATGATACGTGTCGCCTC
TATTATTAAGGGCTCTGACTATAGTCCAAAAATAGATTTTGTTATTTGAA
CATAAAAGTTATATTTCAGGTTCCTTAGCACTTTCAACAAAGAATTGCCT
TTATAAATTGCTTTTTAATCGAATCCCTTAAGAGTAATTAAGAATTTAAT
AGCAAAAATGACGTTATGAACTTTAAAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTACAAAA
AGTGCTTAGTTTTAATGGGTAATTAACTTTTTTGTTTCAAAATTTCTTTA
CACTGTCCGCAAAGAATTGAACTATTTCATATTTTGCGGAAAATTTTTCT
AAAAAGATGTGTCAAATGTTATGACTGTTTTTTTTAAGCAAAATCCAGAT
GAAAAATTAATGAAAAACCACTATTTTGAAGATTTCGAGACAAAGAAGTA
TTTACAAAAATTTTCCGCAAAAATTTTTATTGTTCGGTAAAAGATACACC
ATCTACTGCGAAAAAATTTTAAAAATGTTTTTTCTTCGCCGAATCTAAGC
TCTTCAAAGTTGAAATACTCTTCCTCGTAAAAGTCTTCATTTTCTTCTTC
ATCAAATTTTTTCAATGCAATTTTTAAATTTTCAGNATTATTTTTCACAA
TTGGAGATTAGTTTTGTTTTTCTCTCTAAATATTTTGCTTATTTCAGACT
TATGAAGTATCAATCTGATACTGGAGACACTGAATGGAATATGATTCATC
CCGATCGAAATCCAAGTAATTTGACGTAGTCAACGCTAGGGGTTGGAACT
AGTTACAACATAGAGCAGTGTATTCAAAAGGTAAATGAGCAAATTGAAGG
TGATATCAAAAGAATCCAGCCGGGATGATACGTGTCGCCTCTATTATTAA
GTGAGTTATTTTCTTATTTTCAAAAATTTATAAAGTAAAAAATGTTAGTA
TGTTTTATTTTTGAAAAGCCATCTTGTAATGTTTTGAGCATCAGTTGCAA
CTAGGATATACACTCAATATTGCAAGGACTAAGTGAAGCCTTCATATATG
TGACTTTATCCACAGGGGAGGTACTTAGGCAAAATTGGATACTGTGACGT
GCCGCTGTTCACTGTCTCTTTTCTCGGTTATTATGGATAATTCTCAAGGT
GAGAATTAGAATTTTGGGCAATTTATCACCGACCTAGATCAATGCAACAA
ATTAAAAACAATGTCATTTTAACTAATTTTCATAACTTTATTTTTCAGTT
CGGACTCACCACATGAAAATATATCACATTCTTCGCAACAAACCTATCGG
ACTTTTTTACTACTCTACGTGTAGAGACGATATTTCCAAACGTTTTGACA
TGTCGAGATTTTCCAATTCCCGATCTAAACGAGGTGATCTACTCTCCCTA
TCGAACCGGTTTGATGGCAGACAAAATCAATTTCCACACTGATATAAATT
CTCTAACAACAAGTAAGTTTCTTATGCTTTTTTTGTTGAGTTTAAGCAAA
AGGGGTAGGAAATTCGTTCACAGAGGGTATTACAGCAGACAAACAAACAC
TACACCCCTGTGTCATAGACCCAGCCCCACTGAAAAATTTGGCAAAAATT
TCGTCCCCGGTGGAAAAATACCCTGGTATTTCAGCCCCACTGGGAAATTG
ACTTTGATTTCATACCCATTCCAAATTCAATGTTAAAAAATTGCACTCCA
AAATTTCTATCCCCATTGAGATTTCAAAAGGAATTCTTATTCCCACCACT
GAGGAAAAAGTTCCACCGGGGCTGTGAAACAGGGTTGTAACACTTATTCG
CAATGGGTTATGATCAATTAGGAAACGCTTTTACTATCTTTATTTACCAT
TTTTCGGAAATACTTTTCTGAGTATTTGGGGTATTTTTGGCAGTCAGAAA
TCTTTATTAAAAAAATCAAAAATTTATGTTTTCGGTGCTTTTGAAACATT
TTTATTTCAAAATTACTGAAAAGCTTTTCTTCTCAGCCATATTTTCAAAA
ATTTAGATTTAAAATTTGGTTTTTAATTTGTCACTACTTTGTGACAACAA
AATTTTGAGGTACACAGCAATTTTCAAGAGTTTAGCGTCATTGTTATGAA
AGCTTGCACAGCCTTCAATCTAAAAGTTCCTTCTTTTTTGTAATTTAATT
ACTCAATGCTTAATTTTCATTAAAGGGTTTTATCATTTGGGGTAAGAAAT
CTTATCCCCTCAAGGTTTGAGGAAGCCAAAAAGCATCCTAAGCGTCTTTA
GAGTAGGTTATAAAAAAATTCTGAGTGACTTCTCAGTCCTGACACTAGCA
TCAACACTTTGGTCAGACGATAGTGTTTCACTAAAGTTTGGCTTAAGGGC
TGAGGTGAAGACAGGTGAAGGCTAAAATTGCCCACGTGAGGAGGTTTTCC
TCCTCCGTGGTTCATTTGGAAATTCCCTTGGGAGTTTAGAGAACAATAGA
GTAATTATCTGAAACAATGCATAAGTGATGGTGCTCAGGTTTTTTCTCTT
TTTATAGGAAGATAAATAACACTCTGTTAATCTTTTTGATTTAAAGGTTT
TATTTTTACATGAGTTTTCTCGTTTCATATTAGACGCGTATTTCATATCG
GGACAGTGTCTTCCTATTATATGTTATACTGATATAAGCAAAAAATGTTT
TCTTTTCCTCTTTTCTGTGACGTCTGTGTCAATCCAATGCGAAAAAGCTT
GTAATTTAAAATTTATTTAGTAGTTAGCCCGAAATATTCACATAAACCCA
ACATTACCTAAATTTTTGAACACATAAAGGACTGTCTTTTATTGTCTCTT
TGAAGCCAGCTTTGTTTCCACCTTTTAAATTCGTCATTTATAAGCCGAAC
ATATAAAACTCCGTTACTATTTGTTTCATTCAATATTGCTTTAAAAACTT
TCATACAGCTTAAGGGCTCTGACCATAGTCCAAAAATTGATTGTGGTATT
TGAACATAAAAGTTATATTTCAGGTTCCTTAACACTTCTAACAAAGAATT
GCCTTTATAAATTACTTTTAAATCGAATCCCTTAAGAGTAATTAAGAATT
TAATTGCAAAAATGACGTTATGAACTTTAAAAAGATGTTAATAATATGTT
GCATCACCCTCTTTTACAAAAAGTGCTTAGTTTTAATGGGTAATGATCTT
TTTTGTTTCAAAATTTTTTTACACTGTCCGCAAAGAATTGAACTATTTTA
AATTTTGCGGAAAATTTTTCTAAAAAGATTTGTCAAAAGTTTTGACTGTT
TTTTTAAGCAAAATCCAGATGAAGAATTGATGAAAAACCACTGTTTTGAA
GATTTCGAGACAAAGAAGCATTTACAAAAATCTTCCGCAAAAATTTTTAT
TGTTCGGTAAAAGATACACCATCTACTGCAAAAAAAATTTCAAAATGTTT
TTTCTTCGCCAAAACTAAGCTCTTCAAAGTTGAAATACTCTTCCTCGCAA
AAGTCTTCATTTTCTTCTTCATCAAATTTTTTCAATGCAATTTTTGAATT
TTCAGATTCAGGAATAGTTTGTCTAACAGAAAATGTATAACATGCCATAG
TTTTGTTGGTTACATCTGTCAGAAAACACATTTTAAACACGGCAATTATG
AAAAATTCACTATGGCCAGAGCCCTTAAAAATTACTTGTTTATTTACGAA
GAAAGCTTCTCAAACTTGCTTTAAAGTTTGCACGGAGGTGTGCCGCTAAA
GTTCGTGTTACTCGTTTTTTGGAAAAAGTGACCCCCGAATGGGACTGAAA
TTCCAAATCTCTCTCATATGTAACATCCTAATCAAGCTTTAATCGAGTTT
GTAAAACACAAGGACGGAGTAACTCTCGGACGGGAATTTTAATACACACC
GATAATATTCCTTATATCAAAACATATTAGAAGGGATGCATGCAGCCTGT
TTCATCTTGTACACTTTCTTATTATAGATTTGGAGCAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035969XLOC_035969Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057103-exon-scaffold_285-1575043694:210986..211143TCONS_00057103-exon-scaffold_285-1575043694:210986..211143Clytia hemisphaericaexon
TCONS_00057103-exon-scaffold_285-1575043694:209944..209994TCONS_00057103-exon-scaffold_285-1575043694:209944..209994Clytia hemisphaericaexon
TCONS_00057103-exon-scaffold_285-1575043694:209382..209595TCONS_00057103-exon-scaffold_285-1575043694:209382..209595Clytia hemisphaericaexon
TCONS_00057103-exon-scaffold_285-1575043694:206903..206916TCONS_00057103-exon-scaffold_285-1575043694:206903..206916Clytia hemisphaericaexon
TCONS_00057103-exon-scaffold_285-1510915933:210986..211143TCONS_00057103-exon-scaffold_285-1510915933:210986..211143Clytia hemisphaericaexon
TCONS_00057103-exon-scaffold_285-1510915933:209944..209994TCONS_00057103-exon-scaffold_285-1510915933:209944..209994Clytia hemisphaericaexon
TCONS_00057103-exon-scaffold_285-1510915933:209382..209595TCONS_00057103-exon-scaffold_285-1510915933:209382..209595Clytia hemisphaericaexon
TCONS_00057103-exon-scaffold_285-1510915933:206903..206916TCONS_00057103-exon-scaffold_285-1510915933:206903..206916Clytia hemisphaericaexon
TCONS_00057103-exon-scaffold_285-1491911889:210986..211143TCONS_00057103-exon-scaffold_285-1491911889:210986..211143Clytia hemisphaericaexon
TCONS_00057103-exon-scaffold_285-1491911889:209944..209994TCONS_00057103-exon-scaffold_285-1491911889:209944..209994Clytia hemisphaericaexon
TCONS_00057103-exon-scaffold_285-1491911889:209382..209595TCONS_00057103-exon-scaffold_285-1491911889:209382..209595Clytia hemisphaericaexon
TCONS_00057103-exon-scaffold_285-1491911889:206903..206916TCONS_00057103-exon-scaffold_285-1491911889:206903..206916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:206903..211143 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.4173	52.7697	30.832	31.1985	1.46889	1.98983	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	66.3695	64.066	0.668261	0	2.56037	2.7325	31.0875	54.86
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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