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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057109 ID=TCONS_00057109|Name=TCONS_00057109|organism=Clytia hemisphaerica|type=transcript|length=859bp
ttagacgattaaaaatatgaaatactaAAACAATTTTAACTTActtaaaa
gaatgaaaatatgatggccaatgaaaatgaagaatgtTGGAAACAATGAA
AACATAATGGTCGCAAACAGAGAAGAGACAATAAACAAAGAAGAAGTGAA
ATCTCCTCCTCaatcctcctcctcctcctcctcctccgaagtgtcaaaaa
aagataaaagccAAAAACACCAAGAAGCCACTGTAATGCAATCTCTTTCT
CAAGGCGTCAATACTGATAGTGAATTGGCAATACACGACGAAATGCAAGC
ATGTCAACAAAAAACTGTAGTAGAACCTCCTCAATCTTTCGAAGAAGAAG
TTGAAATACACGATGAAAGCCAAAAATACCAAGAAGTCACTGAAGTGAAA
CCTCCTCCTCAAGGCGTCAATACTGATAGTGAATTGGCAATACACGACGA
AATCCATCAACACCAGCAAGTCACTGTAGTAGAACCTCCTCAATCTTCCG
AAGCAGAAGAAGTGGTTTCAAAACACGATGAAGGAGGTCAAGAAAACCAA
GGAAACATTCAATCCGAAGCCCAAGGTTCAGATACTGATAATGTTGTATT
GGAGGTGGGAGAGCAACAGATTAAACCTTTCAAAAAACCATTTCCacttt
ttttagttgtgttGGAGGTGGGAGAACAACATCAAATTATTGTTCAACAG
AATGACCAAGAGCTCatcttttacgtcacttacgaAGAGGATGTAGAAGT
AGAAGAAGAAGGACAACCAAACTGTGGCGATGGAGAATATGGTGGAACTC
CAGTCGAACAGATTCTCCTGTTCGATCCAACCAAACCTCTCCAGCATCAT
CGTGTAGAC Run BLAST on NCBI protein sequence of TCONS_00057109-protein >TCONS_00057109-protein ID=TCONS_00057109-protein|Name=TCONS_00057109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MKMKNVGNNENIMVANREETINKEEVKSPPQSSSSSSSSEVSKKDKSQKH
QEATVMQSLSQGVNTDSELAIHDEMQACQQKTVVEPPQSFEEEVEIHDES
QKYQEVTEVKPPPQGVNTDSELAIHDEIHQHQQVTVVEPPQSSEAEEVVS
KHDEGGQENQGNIQSEAQGSDTDNVVLEVGEQQIKPFKKPFPLFLVVLEV
GEQHQIIVQQNDQELIFYVTYEEDVEVEEEGQPNCGDGEYGGTPVEQILL
FDPTKPLQHHRVD Run BLAST on NCBI transcript from alignment at scaffold_285:295005..298253- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057109 ID=TCONS_00057109|Name=TCONS_00057109|organism=Clytia hemisphaerica|type=transcript|length=3249bp|location=Sequence derived from alignment at scaffold_285:295005..298253- (Clytia hemisphaerica)
TTAGACGATTAAAAATATGAAATACTAAAACAATTTTAACTTACTTAAAA
GAATGAAAATATGATGGCCAATGAAAATGAAGAATGTTGGAAACAATGAA
AACATAATGGTCGCAAACAGAGAAGAGACAATAAACAAAGAAGAAGTGAA
ATCTCCTCCTCAATCCTCCTCCTCCTCCTCCTCCTCCGAAGTGTCAAAAA
AAGATAAAAGCCAAAAACACCAAGAAGCCACTGTAATGCAATCTCTTTCT
CAAGGCGTCAATACTGATAGTGAATTGGCAATACACGACGAAATGCAAGC
ATGTCAACAAAAAACTGTAGTAGAACCTCCTCAATCTTTCGAAGAAGAAG
TTGAAATACACGATGAAAGCCAAAAATACCAAGAAGTCACTGAAGTGAAA
CCTCCTCCTCAAGGCGTCAATACTGATAGTGAATTGGCAATACACGACGA
AATCCATCAACACCAGCAAGTCACTGTAGTAGAACCTCCTCAATCTTCCG
AAGCAGAAGAAGTGGTTTCAAAACACGATGAAGGAGGTCAAGAAAACCAA
GGAAACATTCAATCCGAAGCCCAAGGTTCAGATACTGATAATGGTATGCT
ATACTTTTTTATCTTAAGGAGGGACTGTTTTATTTTTCATTTGAAATTTT
CGCTCCATTATGTTCAAGATCTCATCAAAAAACGGATCCCTGGTATTGTA
CTTTTCTTTGGGATTGGAATTATTATAAGTTTTTTCTTAGAGCAATTTAT
AAGAACAGAAGGCTAAAATATGGGCGAAAAAGATACCCTGTCCCTTCCAA
GCTTCACATCCCCGTACTTATCTCTTTTTGCCTACAAAGTACTCTTAGTT
AACGTATTACTTCGAATAAACGCCCGGGGCGTTTATTAAATCTTTTCGAT
TTTAGGAGGGGCTTTTATTCGAGGGGGTGTTTAAAAGAAGGGGGCATTTA
TTAAATTATTTGAGTCTAACGTTGAATATTTTAAAAGCAAATCTACTCTT
TGTTTTAGTTATATACCAGGATTTCAGGGCAGATTTCTTTTGGCGACTAG
AATTGCATCAAAACTGATCTGGTTACAAAAAAGACTAAAATCTTTCTTTT
CAATCCTAATCAAAACTTGTATCAAAGTATTTAAGTCACAAGTTTCTAAT
AAATGCCCCTCCCCTAGAGGGGGCGTTCATTCGAAGGGGGCGTTTATTTG
AGGGGGCGTTTGTTAAATAATTTTCCTTTTAGGAGGGGCGTTTATTTGAG
GGGGCGATTAAAAGAAGGGGGCGTTTATTCGAAGTAATACGGTAGATCTC
TCTGATTTGATCTTCAATGGGGCCAAGAATTTTCTTCAAATTAGAAAGAT
TCAAATTACCGTGAATAATTAATGATTAATAATTAAGTTTGAATTAGGGA
TTGTTAGCCGGTGTTTGTTTTTTAACGCGGTCTGTACGATTTTTTACGTA
ATACAATTGCCTCTTTTCGCATACCGACGAGCTTATACAAGTATGACTTC
AGTTATTTTCAAATAAAATGGACACTACGTTGACATCATTTCCATCTATT
TTTCATTTCTTTTTCATTTCTTTTACATTTCTTTTATCGTAAATTCACAC
AAGTCTTTCTCCATTTTAGTCGTCTTTCCCAGTATTCTCGCTATAAAGTG
CAAAAAAAAGAGACAGTTAACAAAGATATGTCTGGTTAGTGAGGGCTGCA
CTGATGAATATCGCCCGAGATGCAACAATGCTTCCGAGTCATTATTAGTA
GGGGACCAATCCTTAGGATCCGTGACATCTTTTATGCGACGCAACCGCAT
GTGGTTAGTTCGAAAGTAGGAAGGTTTTTAAGACTTTTTTGAGAGGGGGC
CCGCGAATTAGGCCCGGCAAAAGTTTTTATGACTAAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAAAAGTTTTT
ATGACTAAAAGACTGACGTTTACAGACAAAACTGTAAGGGTAAAAAATGG
GTAAAAAATTGACGTTTTTTAAAAGTCGAATTTGAAAGAAATGGATGAGA
CCATCGGAAAGAGCATACTACAGCAAGTCTCTTACTCGAACGCACGAAGA
AATACGGCCATCTAAAGTTTCAAATTCTGTCAGATGGAATACGATTGACG
CCAAATTTTGTATGTCACGGATCCTAAGGATTGGCCCCTACTATATTAGA
GTATTAGAGTTGACTGTTTTTGAAATCAATTTAAACCCTTCAAAAAACCA
TTTCCACTTTTTTTAGTTGTATTGGAGGTGGGAGAGCAACAGATTAAACC
TTTCAAAAAACCATTTCCACTTTTTTTAGTTGTGTTGGAGGTGGGAGAAC
AACATCAAATTATTGTTCAACAGAATGACCAAGAGCTCATCTTTTACGTC
ACTTACGAAGAGGATGTAGAAGTAGAAGAAGAAGGACAACCAAACTGTGG
CGATGGAGAATATGGTGGAACTCCAGTCGAACAGGTTGGTACATTACACC
TTTAACATAGCATCAACCCCCCCTGACTTTTTTTTTTTTTTGGGGGGGGG
GTTTACACCCAAAAAAATGCAAATGAAAACCGGAAGCTAAAATACAGCTA
AATATTTGGGGGGACCTGGTATGTTTGGGAGGGCCTGGAATTTCAATGGC
ATTGCTGGGGGCTGACTATAACTTTTTTCTGATTACTAGATATGCCAGAG
AAAACACCTATGAACCCTTTGTACCGCGGTCGGCTTTTTAGGGGACTGGT
AATGAATTTACAAGGAAGATTTGCTCTCGGCGCACGGCATTTTTAGGCTA
CAACTAAATCAAACCAAGCAAATTCCCACCAAAACTCTTGAAAAAGGTAT
TAACTCCTAATAGTAGGAGACAAACCCTTAGGACCCGTGACATCTTTTAT
CCGATGCAACCAAACCTGGTCCATTTGTATTTAAAGAGTTTTTTACGAGG
GGGTGGTTTCTACTGAGGCCCAGGAAAAAAATGACGTCACGGGCAAAAAA
TGGACCAAGTTTTATTACGTCGCGTGAAAGATGTCATTGGTCCTAAGGGT
TTGCCTGCAACTATCAGGAGTTAATACTTTTTTTGTTACTTAATCATTTA
GATTCTCCTGTTCGATCCAACCAAACCTCTCCAGCATCATCGTGTAGAC Coding sequence (CDS) from alignment at scaffold_285:295005..298253- >TCONS_00057109 ID=TCONS_00057109|Name=TCONS_00057109|organism=Clytia hemisphaerica|type=CDS|length=2367bp|location=Sequence derived from alignment at scaffold_285:295005..298253- (Clytia hemisphaerica)
ATTCTCCTGTTCGATCCAACCAAACCTCTCCAGCATCATCGTGTAGACTT
GTATTGGAGGTGGGAGAGCAACAGATTAAACCTTTCAAAAAACCATTTCC
ACTTTTTTTAGTTGTGTTGGAGGTGGGAGAACAACATCAAATTATTGTTC
AACAGAATGACCAAGAGCTCATCTTTTACGTCACTTACGAAGAGGATGTA
GAAGTAGAAGAAGAAGGACAACCAAACTGTGGCGATGGAGAATATGGTGG
AACTCCAGTCGAACAGATGAAAATGAAGAATGTTGGAAACAATGAAAACA
TAATGGTCGCAAACAGAGAAGAGACAATAAACAAAGAAGAAGTGAAATCT
CCTCCTCAATCCTCCTCCTCCTCCTCCTCCTCCGAAGTGTCAAAAAAAGA
TAAAAGCCAAAAACACCAAGAAGCCACTGTAATGCAATCTCTTTCTCAAG
GCGTCAATACTGATAGTGAATTGGCAATACACGACGAAATGCAAGCATGT
CAACAAAAAACTGTAGTAGAACCTCCTCAATCTTTCGAAGAAGAAGTTGA
AATACACGATGAAAGCCAAAAATACCAAGAAGTCACTGAAGTGAAACCTC
CTCCTCAAGGCGTCAATACTGATAGTGAATTGGCAATACACGACGAAATC
CATCAACACCAGCAAGTCACTGTAGTAGAACCTCCTCAATCTTCCGAAGC
AGAAGAAGTGGTTTCAAAACACGATGAAGGAGGTCAAGAAAACCAAGGAA
ACATTCAATCCGAAGCCCAAGGTTCAGATACTGATAATGATTCTCCTGTT
CGATCCAACCAAACCTCTCCAGCATCATCGTGTAGACTTGTATTGGAGGT
GGGAGAGCAACAGATTAAACCTTTCAAAAAACCATTTCCACTTTTTTTAG
TTGTGTTGGAGGTGGGAGAACAACATCAAATTATTGTTCAACAGAATGAC
CAAGAGCTCATCTTTTACGTCACTTACGAAGAGGATGTAGAAGTAGAAGA
AGAAGGACAACCAAACTGTGGCGATGGAGAATATGGTGGAACTCCAGTCG
AACAGATGAAAATGAAGAATGTTGGAAACAATGAAAACATAATGGTCGCA
AACAGAGAAGAGACAATAAACAAAGAAGAAGTGAAATCTCCTCCTCAATC
CTCCTCCTCCTCCTCCTCCTCCGAAGTGTCAAAAAAAGATAAAAGCCAAA
AACACCAAGAAGCCACTGTAATGCAATCTCTTTCTCAAGGCGTCAATACT
GATAGTGAATTGGCAATACACGACGAAATGCAAGCATGTCAACAAAAAAC
TGTAGTAGAACCTCCTCAATCTTTCGAAGAAGAAGTTGAAATACACGATG
AAAGCCAAAAATACCAAGAAGTCACTGAAGTGAAACCTCCTCCTCAAGGC
GTCAATACTGATAGTGAATTGGCAATACACGACGAAATCCATCAACACCA
GCAAGTCACTGTAGTAGAACCTCCTCAATCTTCCGAAGCAGAAGAAGTGG
TTTCAAAACACGATGAAGGAGGTCAAGAAAACCAAGGAAACATTCAATCC
GAAGCCCAAGGTTCAGATACTGATAATGATTCTCCTGTTCGATCCAACCA
AACCTCTCCAGCATCATCGTGTAGACTTGTATTGGAGGTGGGAGAGCAAC
AGATTAAACCTTTCAAAAAACCATTTCCACTTTTTTTAGTTGTGTTGGAG
GTGGGAGAACAACATCAAATTATTGTTCAACAGAATGACCAAGAGCTCAT
CTTTTACGTCACTTACGAAGAGGATGTAGAAGTAGAAGAAGAAGGACAAC
CAAACTGTGGCGATGGAGAATATGGTGGAACTCCAGTCGAACAGATGAAA
ATGAAGAATGTTGGAAACAATGAAAACATAATGGTCGCAAACAGAGAAGA
GACAATAAACAAAGAAGAAGTGAAATCTCCTCCTCAATCCTCCTCCTCCT
CCTCCTCCTCCGAAGTGTCAAAAAAAGATAAAAGCCAAAAACACCAAGAA
GCCACTGTAATGCAATCTCTTTCTCAAGGCGTCAATACTGATAGTGAATT
GGCAATACACGACGAAATGCAAGCATGTCAACAAAAAACTGTAGTAGAAC
CTCCTCAATCTTTCGAAGAAGAAGTTGAAATACACGATGAAAGCCAAAAA
TACCAAGAAGTCACTGAAGTGAAACCTCCTCCTCAAGGCGTCAATACTGA
TAGTGAATTGGCAATACACGACGAAATCCATCAACACCAGCAAGTCACTG
TAGTAGAACCTCCTCAATCTTCCGAAGCAGAAGAAGTGGTTTCAAAACAC
GATGAAGGAGGTCAAGAAAACCAAGGAAACATTCAATCCGAAGCCCAAGG
TTCAGATACTGATAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057109-exon-scaffold_285-1575043694:297661..298253 | TCONS_00057109-exon-scaffold_285-1575043694:297661..298253 | Clytia hemisphaerica | exon |
| TCONS_00057109-exon-scaffold_285-1575043694:295670..295887 | TCONS_00057109-exon-scaffold_285-1575043694:295670..295887 | Clytia hemisphaerica | exon |
| TCONS_00057109-exon-scaffold_285-1575043694:295005..295052 | TCONS_00057109-exon-scaffold_285-1575043694:295005..295052 | Clytia hemisphaerica | exon |
| TCONS_00057109-exon-scaffold_285-1510915933:297661..298253 | TCONS_00057109-exon-scaffold_285-1510915933:297661..298253 | Clytia hemisphaerica | exon |
| TCONS_00057109-exon-scaffold_285-1510915933:295670..295887 | TCONS_00057109-exon-scaffold_285-1510915933:295670..295887 | Clytia hemisphaerica | exon |
| TCONS_00057109-exon-scaffold_285-1510915933:295005..295052 | TCONS_00057109-exon-scaffold_285-1510915933:295005..295052 | Clytia hemisphaerica | exon |
| TCONS_00057109-exon-scaffold_285-1491911889:297661..298253 | TCONS_00057109-exon-scaffold_285-1491911889:297661..298253 | Clytia hemisphaerica | exon |
| TCONS_00057109-exon-scaffold_285-1491911889:295670..295887 | TCONS_00057109-exon-scaffold_285-1491911889:295670..295887 | Clytia hemisphaerica | exon |
| TCONS_00057109-exon-scaffold_285-1491911889:295005..295052 | TCONS_00057109-exon-scaffold_285-1491911889:295005..295052 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:295005..298253 - |
Blast
The following BLAST results are available for this feature:
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