TCONS_00057110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057110
Unique NameTCONS_00057110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057110 ID=TCONS_00057110|Name=TCONS_00057110|organism=Clytia hemisphaerica|type=transcript|length=796bp
ttagacgattaaaaatatgaaatactaAAACAATTTTAACTTActtaaaa
gaatgaaaatatgatggccaatgaaaatgaagaatgtTGGAAACAATGAA
AACATAATGGTCGCAAACAGAGAAGAGACAATAAACAAAGAAGAAGTGAA
ATCTCCTCCTCaatcctcctcctcctcctcctcctccgaagtgtcaaaaa
aagataaaagccAAAAACACCAAGAAGCCACTGTAATGCAATCTCTTTCT
CAAGGCGTCAATACTGATAGTGAATTGGCAATACACGACGAAATGCAAGC
ATGTCAACAAAAAACTGTAGTAGAACCTCCTCAATCTTTCGAAGAAGAAG
TTGAAATACACGATGAAAGCCAAAAATACCAAGAAGTCACTGAAGTGAAA
CCTCCTCCTCAAGGCGTCAATACTGATAGTGAATTGGCAATACACGACGA
AATCCATCAACACCAGCAAGTCACTGTAGTAGAACCTCCTCAATCTTCCG
AAGCAGAAGAAGTGGTTTCAAAACACGATGAAGGAGGTCAAGAAAACCAA
GGAAACATTCAATCCGAAGCCCAAGGTTCAGATACTGATAATGttgtgtt
GGAGGTGGGAGAACAACATCAAATTATTGTTCAACAGAATGACCAAGAGC
TCatcttttacgtcacttacgaAGAGGATGTAGAAGTAGAAGAAGAAGGA
CAACCAAACTGTGGCGATGGAGAATATGGTGGAACTCCAGTCGAACAGAT
TCTCCTGTTCGATCCAACCAAACCTCTCCAGCATCATCGTGTAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_285:295005..298253-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057110 ID=TCONS_00057110|Name=TCONS_00057110|organism=Clytia hemisphaerica|type=transcript|length=3249bp|location=Sequence derived from alignment at scaffold_285:295005..298253- (Clytia hemisphaerica)
TTAGACGATTAAAAATATGAAATACTAAAACAATTTTAACTTACTTAAAA
GAATGAAAATATGATGGCCAATGAAAATGAAGAATGTTGGAAACAATGAA
AACATAATGGTCGCAAACAGAGAAGAGACAATAAACAAAGAAGAAGTGAA
ATCTCCTCCTCAATCCTCCTCCTCCTCCTCCTCCTCCGAAGTGTCAAAAA
AAGATAAAAGCCAAAAACACCAAGAAGCCACTGTAATGCAATCTCTTTCT
CAAGGCGTCAATACTGATAGTGAATTGGCAATACACGACGAAATGCAAGC
ATGTCAACAAAAAACTGTAGTAGAACCTCCTCAATCTTTCGAAGAAGAAG
TTGAAATACACGATGAAAGCCAAAAATACCAAGAAGTCACTGAAGTGAAA
CCTCCTCCTCAAGGCGTCAATACTGATAGTGAATTGGCAATACACGACGA
AATCCATCAACACCAGCAAGTCACTGTAGTAGAACCTCCTCAATCTTCCG
AAGCAGAAGAAGTGGTTTCAAAACACGATGAAGGAGGTCAAGAAAACCAA
GGAAACATTCAATCCGAAGCCCAAGGTTCAGATACTGATAATGGTATGCT
ATACTTTTTTATCTTAAGGAGGGACTGTTTTATTTTTCATTTGAAATTTT
CGCTCCATTATGTTCAAGATCTCATCAAAAAACGGATCCCTGGTATTGTA
CTTTTCTTTGGGATTGGAATTATTATAAGTTTTTTCTTAGAGCAATTTAT
AAGAACAGAAGGCTAAAATATGGGCGAAAAAGATACCCTGTCCCTTCCAA
GCTTCACATCCCCGTACTTATCTCTTTTTGCCTACAAAGTACTCTTAGTT
AACGTATTACTTCGAATAAACGCCCGGGGCGTTTATTAAATCTTTTCGAT
TTTAGGAGGGGCTTTTATTCGAGGGGGTGTTTAAAAGAAGGGGGCATTTA
TTAAATTATTTGAGTCTAACGTTGAATATTTTAAAAGCAAATCTACTCTT
TGTTTTAGTTATATACCAGGATTTCAGGGCAGATTTCTTTTGGCGACTAG
AATTGCATCAAAACTGATCTGGTTACAAAAAAGACTAAAATCTTTCTTTT
CAATCCTAATCAAAACTTGTATCAAAGTATTTAAGTCACAAGTTTCTAAT
AAATGCCCCTCCCCTAGAGGGGGCGTTCATTCGAAGGGGGCGTTTATTTG
AGGGGGCGTTTGTTAAATAATTTTCCTTTTAGGAGGGGCGTTTATTTGAG
GGGGCGATTAAAAGAAGGGGGCGTTTATTCGAAGTAATACGGTAGATCTC
TCTGATTTGATCTTCAATGGGGCCAAGAATTTTCTTCAAATTAGAAAGAT
TCAAATTACCGTGAATAATTAATGATTAATAATTAAGTTTGAATTAGGGA
TTGTTAGCCGGTGTTTGTTTTTTAACGCGGTCTGTACGATTTTTTACGTA
ATACAATTGCCTCTTTTCGCATACCGACGAGCTTATACAAGTATGACTTC
AGTTATTTTCAAATAAAATGGACACTACGTTGACATCATTTCCATCTATT
TTTCATTTCTTTTTCATTTCTTTTACATTTCTTTTATCGTAAATTCACAC
AAGTCTTTCTCCATTTTAGTCGTCTTTCCCAGTATTCTCGCTATAAAGTG
CAAAAAAAAGAGACAGTTAACAAAGATATGTCTGGTTAGTGAGGGCTGCA
CTGATGAATATCGCCCGAGATGCAACAATGCTTCCGAGTCATTATTAGTA
GGGGACCAATCCTTAGGATCCGTGACATCTTTTATGCGACGCAACCGCAT
GTGGTTAGTTCGAAAGTAGGAAGGTTTTTAAGACTTTTTTGAGAGGGGGC
CCGCGAATTAGGCCCGGCAAAAGTTTTTATGACTAAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAAAAGTTTTT
ATGACTAAAAGACTGACGTTTACAGACAAAACTGTAAGGGTAAAAAATGG
GTAAAAAATTGACGTTTTTTAAAAGTCGAATTTGAAAGAAATGGATGAGA
CCATCGGAAAGAGCATACTACAGCAAGTCTCTTACTCGAACGCACGAAGA
AATACGGCCATCTAAAGTTTCAAATTCTGTCAGATGGAATACGATTGACG
CCAAATTTTGTATGTCACGGATCCTAAGGATTGGCCCCTACTATATTAGA
GTATTAGAGTTGACTGTTTTTGAAATCAATTTAAACCCTTCAAAAAACCA
TTTCCACTTTTTTTAGTTGTATTGGAGGTGGGAGAGCAACAGATTAAACC
TTTCAAAAAACCATTTCCACTTTTTTTAGTTGTGTTGGAGGTGGGAGAAC
AACATCAAATTATTGTTCAACAGAATGACCAAGAGCTCATCTTTTACGTC
ACTTACGAAGAGGATGTAGAAGTAGAAGAAGAAGGACAACCAAACTGTGG
CGATGGAGAATATGGTGGAACTCCAGTCGAACAGGTTGGTACATTACACC
TTTAACATAGCATCAACCCCCCCTGACTTTTTTTTTTTTTTGGGGGGGGG
GTTTACACCCAAAAAAATGCAAATGAAAACCGGAAGCTAAAATACAGCTA
AATATTTGGGGGGACCTGGTATGTTTGGGAGGGCCTGGAATTTCAATGGC
ATTGCTGGGGGCTGACTATAACTTTTTTCTGATTACTAGATATGCCAGAG
AAAACACCTATGAACCCTTTGTACCGCGGTCGGCTTTTTAGGGGACTGGT
AATGAATTTACAAGGAAGATTTGCTCTCGGCGCACGGCATTTTTAGGCTA
CAACTAAATCAAACCAAGCAAATTCCCACCAAAACTCTTGAAAAAGGTAT
TAACTCCTAATAGTAGGAGACAAACCCTTAGGACCCGTGACATCTTTTAT
CCGATGCAACCAAACCTGGTCCATTTGTATTTAAAGAGTTTTTTACGAGG
GGGTGGTTTCTACTGAGGCCCAGGAAAAAAATGACGTCACGGGCAAAAAA
TGGACCAAGTTTTATTACGTCGCGTGAAAGATGTCATTGGTCCTAAGGGT
TTGCCTGCAACTATCAGGAGTTAATACTTTTTTTGTTACTTAATCATTTA
GATTCTCCTGTTCGATCCAACCAAACCTCTCCAGCATCATCGTGTAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035973XLOC_035973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057110-exon-scaffold_285-1575043694:297661..298253TCONS_00057110-exon-scaffold_285-1575043694:297661..298253Clytia hemisphaericaexon
TCONS_00057110-exon-scaffold_285-1575043694:295670..295824TCONS_00057110-exon-scaffold_285-1575043694:295670..295824Clytia hemisphaericaexon
TCONS_00057110-exon-scaffold_285-1575043694:295005..295052TCONS_00057110-exon-scaffold_285-1575043694:295005..295052Clytia hemisphaericaexon
TCONS_00057110-exon-scaffold_285-1510915933:297661..298253TCONS_00057110-exon-scaffold_285-1510915933:297661..298253Clytia hemisphaericaexon
TCONS_00057110-exon-scaffold_285-1510915933:295670..295824TCONS_00057110-exon-scaffold_285-1510915933:295670..295824Clytia hemisphaericaexon
TCONS_00057110-exon-scaffold_285-1510915933:295005..295052TCONS_00057110-exon-scaffold_285-1510915933:295005..295052Clytia hemisphaericaexon
TCONS_00057110-exon-scaffold_285-1491911889:297661..298253TCONS_00057110-exon-scaffold_285-1491911889:297661..298253Clytia hemisphaericaexon
TCONS_00057110-exon-scaffold_285-1491911889:295670..295824TCONS_00057110-exon-scaffold_285-1491911889:295670..295824Clytia hemisphaericaexon
TCONS_00057110-exon-scaffold_285-1491911889:295005..295052TCONS_00057110-exon-scaffold_285-1491911889:295005..295052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:295005..298253 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0260853	0	0	0	0	0	0	0	0	0.42934	0	0	0	0	0	0	0	0	0	0.573725	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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