TCONS_00057116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057116
Unique NameTCONS_00057116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1171

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057116 ID=TCONS_00057116|Name=TCONS_00057116|organism=Clytia hemisphaerica|type=transcript|length=1171bp
ACGTTTCGATGTAAAAATTGTATGTGACATTTTCATCATCTGCCTTGGTT
GATAGCTCTGCAAACGTAGAGAACTTACCTACGTGTCTCAATATACGCAG
GATACGTCCGATAACTATGGAATTTTTGGCCCAGCAGCGCAGCGTAGTGG
GCCTTTCATCTGCACAGTGCCCGTACGTTTGTTAGTTACGCAAAGCAATT
AGGCGGTGTTCCGCGAGAGTACATATATTTTCCAGGCTAAACTCAGCGCT
ATAATGTAAAGGGATCGACAGGGATCGTCATAGTCAATCTTGTCTGTCGG
CTAGCATACAATTATCTAACCTCTAGCAAAGCCGAGGAAAGCCATATGTT
GATATATGGCTGAAGATCGTATCTTGTTATTGTCTGTATTTCGTATAGTC
TACCACCTACATAGACTATCTTCAACTCAACGTGGAGTGTTCAACGTGAG
CTCTTTTTCTCTCAAAGACTGAGAAGTAAAGAGTTCAAGAAGTAAAGAGG
ATAAATCAAGATTTTACTGTCACTGACTGCTGCTGCCATACATAAAGTTT
TGGACCATCATCCATATACATCAAGACTGTTATCGTACATCATATCCAGA
CTGATTGGTTCCCACTGATTGATTGATACCCAATCTTAAGggttCATCAT
TCAGTGTATAGCTACTCTGGTCAATCTGGATTTAAATTAGATAGCTTGGT
TATACAAAGCTAACTTGGATTTACACAGTTAACTCAGATTTAAAGGATTC
CCCTCGATTCACTTGGCTCACCAGAATACACTTGGAATACTTTGTTTTAC
TCAGTTTATTTGGTTTTACACGGCTCAATTGATACTACTCGGCTCACCTG
ATATTACTtggctcacttgatattactcggctcacttgatattactcggc
tcacttgatattactcggctcacttgatattactcggctaacttgatatt
actcagctaacttgacaCTACTCGGCTACTGTAGCTTGATagtactcggc
tcacttgattcTACATAGTTCACTTGATTCAATTAACTTGTGTTTCATTG
GCTAACCcggaatttatgattttttttgacatttcattgTTTACCACTTA
CTTGCTCAGCTTTTTTAACttgttttaaaacaataggctattaaaataaa
tatacatTATATTTGAAACTG
Run BLAST on NCBI

transcript from alignment at scaffold_285:415652..418412-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057116 ID=TCONS_00057116|Name=TCONS_00057116|organism=Clytia hemisphaerica|type=transcript|length=2761bp|location=Sequence derived from alignment at scaffold_285:415652..418412- (Clytia hemisphaerica)
ACGTTTCGATGTAAAAATTGTATGTGACATTTTCATCATCTGCCTTGGTT
GATAGCTCTGCAAACGTAGAGAACTTACCTACGTGTCTCAATATACGCAG
GATACGTCCGATAACTATGGAATTTTTGGCCCAGCAGCGCAGCGTAGTGG
GCCTTTCATCTGCACAGTGCCCGTACGTTTGTTAGTTACGCAAAGCAATT
AGGCGGTGTTCCGCGAGAGTACATATATTTTCCAGGCTAAACTCAGCGCT
ATAATGTAAAGGGATCGACAGGGATCGTCATAGTCAATCTTGTCTGTCGG
CTAGCATACAATTATCTAACCTCTAGCAAAGCCGAGGAAAGCCATATGTT
GATATATGGCTGAAGATCGTATCTTGTTATTGTCTGTATTTCGTATAGTC
TACCACCTACATAGACTATCTTCAACTCAACGTGGAGTGTTCAACGTGAG
CTCTTTTTCTCTCAAAGACTGAGAAGTAAAGAGTTCAAGAAGTAAAGAGG
ATAAATCAAGATTTTACTGTCACTGACTGCTGCTGCCATACATAAAGGTA
AATCTCTATTGTGTGCTCCAGTAGTATCATAAGAATATTGGCCTTTTGCA
ACAAGACACTCTGGGAAATACAAAAAATCTGCAAGGTTAATTCTCAAATT
AAGGGCTAGGTAGGAGGGGTAAGAATCAGGCAATTCCACTTATACAAAAA
GTGCAGCGCAGGTCACTATTGGGTCGTTTGGTGTATGCTTTGATTTTGAA
AACAGCTATTCTATCTATTACTTCCGTCTGCCAATAATAGGGTCGGTCGG
TCGATACTCGAAACCAGACGATCTCAATCGAACAGAACCGATGATTGAGC
CAGATCGAACGCAAGTGAACGATTAAAATTCGATTGTTGAACGCAATCTG
GGTTCGATTGCGTTCGATTGCATTCGATTCAATGACTCGAACGAAAATCT
CAATCAAATGAATCAAATAATACCTAGAATTTGGTCGTTGGATTGAGATT
CGATTGAGTTCGACAATCGAATTTCAATTCCGTTTGATTGAGATCGTCTG
GTCGAAATGGAGAAAACAATTTTACTTGAGGTAGCAAAAACTTGAAATTC
ACCAATTTCAGTTCTAACCAAAATTGATTCTTGCCGTCAATCATTAAAAA
AAGGTAATAGAAAGGGAAGATTTGCCTGGCCATTCGCCAAAATAAGCTCT
TATCAAAATTTAAAATATATTCATTCACCAAAATTCGTTCTCACGAAGAT
AAAAGTTTTTGCTGACTTTAGTTGTTTGCCAAATTAAGTTCTTGCCAAAA
AATGTTCCCTTAAAGGTATTACTCCAGGCCATGCCTAATAATTGTACTTT
TTGTTAATAAGAATCATATTTGTTTTTCTTTTTGAACAGTTTTGGACCAT
CATCCATATACATCAAGACTGTTATCGTACATCATATCCAGANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAT
CGTACATCATATCCAGACTGATTGGTTCCCACTGATTGATTGATACCCAA
TCTTAAGGTGAGTTTGAATTTGATTTTCTTCAGGATTTATCATTAAAAGG
CTTAAGAACCTAATGACCTAAGTGAAAATCCAGTTGTGTATTACCATTTA
CTGCAAAATCTTTGTGAGGTTGGGGGAAGCGTGGTAAAGAGAAGCCCATT
GTTGGTTATAGAGAAGGATTTCTTTTTTTGATTCGTAATTTTTTGTCCTT
TTTGTTTGAAACTTTTAAAGGGATAACCAGATAAAATATGAAAATTGGCT
AAAAGATTCTTTCCACGGTCCTAAGTAAGCCCTCCAAATAAGGAAGGAAT
CTTTGGGCTGAATTTTATTTTTATCTGGTTATCCCTTTAAGGTAGCTGCC
CTGGAAATGAGATTTTCACTTGTATTTGTAAAACATCATGATCAGATTTC
ATCTCGGGTTCTTTATGTTGTGCGAAAAAATTATGACCTACAAATGCTTG
CACGCCTCAATTTTCAACAAAAAGCAAGTGTCTTCCTAACGGGTGGACAT
ACTTATGAAAGTCTTCCAGAACTTGGAACAAGCTTAAGCTGCACTTGAGC
TTTACGATTTATGAACATGGTAGTATACTCCAGTTGAACGCGACTGTTTG
CGTAATTTCGTTTTTGTTTTTATTTTTCAGGGTTCATCATTCAGTGTATA
GCTACTCTGGTCAATCTGGATTTAAATTAGATAGCTTGGTTATACAAAGC
TAACTTGGATTTACACAGTTAACTCAGATTTAAAGGATTCCCCTCGATTC
ACTTGGCTCACCAGAATACACTTGGAATACTTTGTTTTACTCAGTTTATT
TGGTTTTACACGGCTCAATTGATACTACTCGGCTCACCTGATATTACTTG
GCTCACTTGATATTACTCGGCTCACTTGATATTACTCGGCTCACTTGATA
TTACTCGGCTCACTTGATATTACTCGGCTAACTTGATATTACTCAGCTAA
CTTGACACTACTCGGCTACTGTAGCTTGATAGTACTCGGCTCACTTGATT
CTACATAGTTCACTTGATTCAATTAACTTGTGTTTCATTGGCTAACCCGG
AATTTATGATTTTTTTTGACATTTCATTGTTTACCACTTACTTGCTCAGC
TTTTTTAACTTGTTTTAAAACAATAGGCTATTAAAATAAATATACATTAT
ATTTGAAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035977XLOC_035977Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057116-exon-scaffold_285-1575043694:417866..418412TCONS_00057116-exon-scaffold_285-1575043694:417866..418412Clytia hemisphaericaexon
TCONS_00057116-exon-scaffold_285-1575043694:416983..417023TCONS_00057116-exon-scaffold_285-1575043694:416983..417023Clytia hemisphaericaexon
TCONS_00057116-exon-scaffold_285-1575043694:416806..416857TCONS_00057116-exon-scaffold_285-1575043694:416806..416857Clytia hemisphaericaexon
TCONS_00057116-exon-scaffold_285-1575043694:415652..416182TCONS_00057116-exon-scaffold_285-1575043694:415652..416182Clytia hemisphaericaexon
TCONS_00057116-exon-scaffold_285-1510915933:417866..418412TCONS_00057116-exon-scaffold_285-1510915933:417866..418412Clytia hemisphaericaexon
TCONS_00057116-exon-scaffold_285-1510915933:416983..417023TCONS_00057116-exon-scaffold_285-1510915933:416983..417023Clytia hemisphaericaexon
TCONS_00057116-exon-scaffold_285-1510915933:416806..416857TCONS_00057116-exon-scaffold_285-1510915933:416806..416857Clytia hemisphaericaexon
TCONS_00057116-exon-scaffold_285-1510915933:415652..416182TCONS_00057116-exon-scaffold_285-1510915933:415652..416182Clytia hemisphaericaexon
TCONS_00057116-exon-scaffold_285-1491911889:417866..418412TCONS_00057116-exon-scaffold_285-1491911889:417866..418412Clytia hemisphaericaexon
TCONS_00057116-exon-scaffold_285-1491911889:416983..417023TCONS_00057116-exon-scaffold_285-1491911889:416983..417023Clytia hemisphaericaexon
TCONS_00057116-exon-scaffold_285-1491911889:416806..416857TCONS_00057116-exon-scaffold_285-1491911889:416806..416857Clytia hemisphaericaexon
TCONS_00057116-exon-scaffold_285-1491911889:415652..416182TCONS_00057116-exon-scaffold_285-1491911889:415652..416182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:415652..418412 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.97395	3.69927	1.47538	1.43273	24.0459	17.2949	12.0083	12.9554	2.98938	5.43524	4.43044	4.77132	5.9531	2.99251	4.21733	4.58237	3.98537	5.38731	4.45631	6.91267	6.53048	7.88635	6.68024	6.22142	5.96368	9.34919	4.50097	3.21398	5.28956	4.02671
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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