TCONS_00057121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057121
Unique NameTCONS_00057121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057121 ID=TCONS_00057121|Name=TCONS_00057121|organism=Clytia hemisphaerica|type=transcript|length=188bp
GCTAGTGGCACGTGCAAACCTCGTGGGCGTGGTTTCAGAAAGTCGAGcta
CATCCAGAGCAATCGACACCTATCACAACAAGATTTTTCGGAACACAAAc
agaaaataaaatcttttgcaTCCCAGAGACAACAGGAGATGAAACCAGAT
CCTTTATTCATATAAGTTGGCCCAGCGGTACTGGATAT
Run BLAST on NCBI

transcript from alignment at scaffold_285:514010..516015-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057121 ID=TCONS_00057121|Name=TCONS_00057121|organism=Clytia hemisphaerica|type=transcript|length=2006bp|location=Sequence derived from alignment at scaffold_285:514010..516015- (Clytia hemisphaerica)
GCTAGTGGCACGTGCAAACCTCGTGGGCGTGGTTTCAGAAAGTCGAGGTA
AACAGGTTATTCAGTATTTTTTTACTCCTTAGATTCAAATCACTGAAGCA
AAGTTGATCTTTTATCATTATACAGAATTAATGTCCCGAATCTATTTCAT
TGTAACTACCAACTTGAAGCCCTGAACAATGGAATGTCTGAATTATTTCA
ATTTTCAGATATTATACTCTTGCATTGCTAATTTAGTCCATTTGTAAAGA
TTTTCAATTATCTTCTGTTTTACTTTCTCGCAGGACTGAAGAAAGGATGT
CCATTTTACATCAGGTTCCGATTAGATAAAGACCGTCAGGCATTAGAAGT
ATAAAGATATTGAACGTTCACATAACCACGAATTAAACGCAGTAAGGAAT
ACACTCCGACAGGTTCTTTGTAGAAAAACAAATACTTATGAAACTGGACC
TTTCCTGAGACTTTAAAAGGGAAAAATGGTCCTTTGATGTCACAAATTTG
AGATAAATTTGGCACCTCTTCGAATTTTCATCTACGCGTCTTATAGTACC
ACTGTTCAATAAATCATGGACGTTTTTTTCTTATGGTATGCCTTTCGTAA
TCTTTCAAATATTAAAGGTAAGGCTTTCCTTACCATAACCTTTGTACCCA
CTACAACTGCAGTGATAGAAGCTTAACTTAAGTATCAAATCAAAATCTTC
CTAGTTCTGTGGTCGAATTCATTCATGAATCTGGCATGTTCGGTGGTGCA
CTATTTTAATCCCCTAACAATTCTAATTCTTTTTATGATGTTACCCTCTT
TTTTACGTAGTCTAGTGCCCCTGGTGGCGATATAACATTAGGTTCTAGCA
GGGGGATTATATTTATGTGAGCCATGTTTGTAGTGTATTAGTGTACCTGT
GTCTACGTTCTCAAAAGGTTAGCCTTTTTACGCAGTATCTCCAAAACGTA
GCCTATATCAGATATCACGGCTTTTTTTGTTTTCAAATCTTAAGTCAGTC
AATAGTTTAGATCAGAGGGAGAGGGAGAGAGTGGTCCGTCCTATCAGAGG
AACTGGCCTAAAGAAATATGTTAAATATAAATTTTAGGAAATCACTACGC
TAGGGATCAAAAGGTATTTAAATCAAGTAGTCCAAATCGCAATATTCAAT
TTAGTTTTTCAAAAAGTTCCAAACTATCAAAGAGCGAAGATTCTATTTTA
TTACCATACTAGAAGTTTTTAGATTGTGTGTATGGTGCTATTATAGAAAC
TCCTCAATGTCGATACACTTTAGCCCCCTTCTCCTCCAGATTTTAAAAGG
TTAGCTGTCCCATGTTTGTCAAGTAAAATAAATTTTAGTCTGATTCGCAG
ACCTATACTTTTTATTATTTTTTCGATTAGTTATAAAGTCTAGTATATTA
TAAACAACACTTTTTGAAAAAACTGGTAAATGTTTCAAAACTTTTCAAGA
CAAGTGCCCCCCCGGATCTGATACCAACACCAACTTGATAGCTGGTTTGG
TGCATCTAACCGGTGTTCGTATCTATGCTACACAAAATGTCAATATTTCC
CAACTTTAAAATACTTGATCGAAATCTTCAATTTCTTTTGATTGAAATTA
TGAAAGTGGACTGTTTTCTAAGTATTCAAAATGTTTTTTGTTGAAATTAT
ACTTTAGTTTGATACAAAAAATTGATTCGATGGCTTGTTCGAGAGTGACC
TCTTCCTTAATCTACTAAAGAAAAATAAATCTATTGTTGAGCGTTCAAAA
CTGTTTGGTAATAGTGTCAGTGTGTGCACAAACTTCTGAAAATTAACCTT
TTTATCAAAATCTGGATTCTTCAATTCAAAAAATTGTTAAAAAACTTCCA
CTTTTTGAATTTTAGCTACATCCAGAGCAATCGACACCTATCACAACAAG
ATTTTTCGGAACACAAACAGAAAATAAAATCTTTTGCATCCCAGAGACAA
CAGGAGATGAAACCAGATCCTTTATTCATATAAGTTGGCCCAGCGGTACT
GGATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035981XLOC_035981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057121-exon-scaffold_285-1575043694:515969..516015TCONS_00057121-exon-scaffold_285-1575043694:515969..516015Clytia hemisphaericaexon
TCONS_00057121-exon-scaffold_285-1575043694:514010..514150TCONS_00057121-exon-scaffold_285-1575043694:514010..514150Clytia hemisphaericaexon
TCONS_00057121-exon-scaffold_285-1510915933:515969..516015TCONS_00057121-exon-scaffold_285-1510915933:515969..516015Clytia hemisphaericaexon
TCONS_00057121-exon-scaffold_285-1510915933:514010..514150TCONS_00057121-exon-scaffold_285-1510915933:514010..514150Clytia hemisphaericaexon
TCONS_00057121-exon-scaffold_285-1491911889:515969..516015TCONS_00057121-exon-scaffold_285-1491911889:515969..516015Clytia hemisphaericaexon
TCONS_00057121-exon-scaffold_285-1491911889:514010..514150TCONS_00057121-exon-scaffold_285-1491911889:514010..514150Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:514010..516015 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.11306	1.19448	0	0	0	4.36093	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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