TCONS_00057146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057146
Unique NameTCONS_00057146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057146 ID=TCONS_00057146|Name=TCONS_00057146|organism=Clytia hemisphaerica|type=transcript|length=271bp
ATCTTCCATCGCTTCCTTCGAACACCATACTCGTTACAATGGATGTTGCT
TCACTGTACACCAACATCGATCACGAAGAAGGAGCAAATGCCTGCTTTGA
TCATCTGGAACAACGCAACAAGAAATCGATCAGCTCATCTTATCTAAAAA
AGCTGATACTTCTGGTACTACGGTCAAACGTATTCCGATTTGGGAGCAAC
ATCTACCACCAAATCAAAGGAACCGCGATGGGTACTCCAATGGCTCCAAA
CTACGCAAACCTCTTCATGAC
Run BLAST on NCBI

transcript from alignment at scaffold_285:366541..366811

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057146 ID=TCONS_00057146|Name=TCONS_00057146|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at scaffold_285:366541..366811 (Clytia hemisphaerica)
GTCATGAAGAGGTTTGCGTAGTTTGGAGCCATTGGAGTACCCATCGCGGT
TCCTTTGATTTGGTGGTAGATGTTGCTCCCAAATCGGAATACGTTTGACC
GTAGTACCAGAAGTATCAGCTTTTTTAGATAAGATGAGCTGATCGATTTC
TTGTTGCGTTGTTCCAGATGATCAAAGCAGGCATTTGCTCCTTCTTCGTG
ATCGATGTTGGTGTACAGTGAAGCAACATCCATTGTAACGAGTATGGTGT
TCGAAGGAAGCGATGGAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036005XLOC_036005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057146-exon-scaffold_285-1491911889:366541..366811TCONS_00057146-exon-scaffold_285-1491911889:366541..366811Clytia hemisphaericaexon
TCONS_00057146-exon-scaffold_285-1510915933:366541..366811TCONS_00057146-exon-scaffold_285-1510915933:366541..366811Clytia hemisphaericaexon
TCONS_00057146-exon-scaffold_285-1575043694:366541..366811TCONS_00057146-exon-scaffold_285-1575043694:366541..366811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:366541..366811 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.07403	0	0	0.13843	0.775962	6.3603	4.66179	1.8177	0.914828	0.429849	0.0540242	0	2.1456	0	0	5.06666	3.0737	0	0	0.465224	0	0	0.00310175	0	0	0.176382	0	0.387297	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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