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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057165 ID=TCONS_00057165|Name=TCONS_00057165|organism=Clytia hemisphaerica|type=transcript|length=1263bp
CTtcttatcggcgatccaaaaaatatctgcaatctgattggttaaaaaga
gtacaatatatcttgtattttacatgtaaaaatataaattgacaaaaaga
tgttgttgcattgtagcggtagaagcaatctaacgtcactttgctacaaa
agtgtcctccaacacaaaaaatgcattttttgggtcgccgataaaccagt
tatcagacatttgctcgtacaatatggaaatatttcactcgttccggatt
ttccgtatattttcctcgcctaaaggctcggaaaatattgtacggaaaaa
tctcggaactcgtaaaatatttctcatattgtactcgcaactgtccgata
actattacatatgaTTGTTATTTAGATCTTAAGATCTTGGATTTTTGGTT
TTTAATATTTGCTAAACTTCCTACATAACTTAGCAACGGTAGTCAAGTGC
TTCgttatcataaattttacaagacAATGGCAAAGAATATTGATGACGAA
TTGCATGAGGCATTCCCACTAATCACATCCAGTTCATCGACCAGTTATTA
TGAAAGTtgtgaaaacaataaaatacttTCATCTGGAAAACTTGGTACAG
ACGATTCGAAAACATTACgtcgaaatatgaaatttcatcATTGTTTTGCA
TTTGTAGTTGGTTGCATTGTTGGTGCTGGAATATTCATAGCACCCTCTCT
TGTGGCTCAATACACACCTAACTTATTTGTTGCGTTACTAGCCTGGACAT
TAGCCGGTGGAATCGCGTTACTTGGTGCGTTATGCTATTGTGAGATGGTC
TCAGTTGTCAATAAAACTGGAGCATCCTACATTTTCATTTTAGACTGTTA
CGGTAAAGCAGCAGGTTTTATAGTCAACTGGACGAACGCTTTGATTTTTG
CGCCATGTGATGCTTGCATTTTGTTGATCACTATCGGTTTGTACGCATGT
GCACCTTTCTTTGAAGATCACAATTCCGTCGAATATTTATGGTGCGCAAA
ACTGGTTGGTGGCGCCTGTATGATAGTTATAGCTGGTGTAAATTGCTTAG
GCGCCAAGAAGTCTGGCATctttcaaatcattttcatttccaTACAAGTC
ATTTTATTCCTTGTTGTAATTATAATGTCCATTTATGCCGCAGTGCATGA
TGGTACTTACCAAAATCTATTACCAGAGACAACATTCAATAACACCATAT
CGTCTTTCAAGAAAGATTTTCCAGCCTTTTCGATAGCTCTTTTTAACGCG
TTGTATTGTTTTG Run BLAST on NCBI protein sequence of TCONS_00057165-protein >TCONS_00057165-protein ID=TCONS_00057165-protein|Name=TCONS_00057165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MAKNIDDELHEAFPLITSSSSTSYYESCENNKILSSGKLGTDDSKTLRRN
MKFHHCFAFVVGCIVGAGIFIAPSLVAQYTPNLFVALLAWTLAGGIALLG
ALCYCEMVSVVNKTGASYIFILDCYGKAAGFIVNWTNALIFAPCDACILL
ITIGLYACAPFFEDHNSVEYLWCAKLVGGACMIVIAGVNCLGAKKSGIFQ
IIFISIQVILFLVVIIMSIYAAVHDGTYQNLLPETTFNNTISSFKKDFPA
FSIALFNALYCF Run BLAST on NCBI transcript from alignment at scaffold_285:581155..582417 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057165 ID=TCONS_00057165|Name=TCONS_00057165|organism=Clytia hemisphaerica|type=transcript|length=1263bp|location=Sequence derived from alignment at scaffold_285:581155..582417 (Clytia hemisphaerica)
CAAAACAATACAACGCGTTAAAAAGAGCTATCGAAAAGGCTGGAAAATCT
TTCTTGAAAGACGATATGGTGTTATTGAATGTTGTCTCTGGTAATAGATT
TTGGTAAGTACCATCATGCACTGCGGCATAAATGGACATTATAATTACAA
CAAGGAATAAAATGACTTGTAtggaaatgaaaatgatttgaaagATGCCA
GACTTCTTGGCGCCTAAGCAATTTACACCAGCTATAACTATCATACAGGC
GCCACCAACCAGTTTTGCGCACCATAAATATTCGACGGAATTGTGATCTT
CAAAGAAAGGTGCACATGCGTACAAACCGATAGTGATCAACAAAATGCAA
GCATCACATGGCGCAAAAATCAAAGCGTTCGTCCAGTTGACTATAAAACC
TGCTGCTTTACCGTAACAGTCTAAAATGAAAATGTAGGATGCTCCAGTTT
TATTGACAACTGAGACCATCTCACAATAGCATAACGCACCAAGTAACGCG
ATTCCACCGGCTAATGTCCAGGCTAGTAACGCAACAAATAAGTTAGGTGT
GTATTGAGCCACAAGAGAGGGTGCTATGAATATTCCAGCACCAACAATGC
AACCAACTACAAATGCAAAACAATgatgaaatttcatatttcgacGTAAT
GTTTTCGAATCGTCTGTACCAAGTTTTCCAGATGAaagtattttattgtt
ttcacaACTTTCATAATAACTGGTCGATGAACTGGATGTGATTAGTGGGA
ATGCCTCATGCAATTCGTCATCAATATTCTTTGCCATTgtcttgtaaaat
ttatgataacGAAGCACTTGACTACCGTTGCTAAGTTATGTAGGAAGTTT
AGCAAATATTAAAAACCAAAAATCCAAGATCTTAAGATCTAAATAACAAt
catatgtaatagttatcggacagttgcgagtacaatatgagaaatatttt
acgagttccgagatttttccgtacaatattttccgagcctttaggcgagg
aaaatatacggaaaatccggaacgagtgaaatatttccatattgtacgag
caaatgtctgataactggtttatcggcgacccaaaaaatgcattttttgt
gttggaggacacttttgtagcaaagtgacgttagattgcttctaccgcta
caatgcaacaacatctttttgtcaatttatatttttacatgtaaaataca
agatatattgtactctttttaaccaatcagattgcagatattttttggat
cgccgataagaAG Coding sequence (CDS) from alignment at scaffold_285:581155..582417 >TCONS_00057165 ID=TCONS_00057165|Name=TCONS_00057165|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_285:581155..582417 (Clytia hemisphaerica)
AAAACAATACAACGCGTTAAAAAGAGCTATCGAAAAGGCTGGAAAATCTT
TCTTGAAAGACGATATGGTGTTATTGAATGTTGTCTCTGGTAATAGATTT
TGGTAAGTACCATCATGCACTGCGGCATAAATGGACATTATAATTACAAC
AAGGAATAAAATGACTTGTAtggaaatgaaaatgatttgaaagATGCCAG
ACTTCTTGGCGCCTAAGCAATTTACACCAGCTATAACTATCATACAGGCG
CCACCAACCAGTTTTGCGCACCATAAATATTCGACGGAATTGTGATCTTC
AAAGAAAGGTGCACATGCGTACAAACCGATAGTGATCAACAAAATGCAAG
CATCACATGGCGCAAAAATCAAAGCGTTCGTCCAGTTGACTATAAAACCT
GCTGCTTTACCGTAACAGTCTAAAATGAAAATGTAGGATGCTCCAGTTTT
ATTGACAACTGAGACCATCTCACAATAGCATAACGCACCAAGTAACGCGA
TTCCACCGGCTAATGTCCAGGCTAGTAACGCAACAAATAAGTTAGGTGTG
TATTGAGCCACAAGAGAGGGTGCTATGAATATTCCAGCACCAACAATGCA
ACCAACTACAAATGCAAAACAATgatgaaatttcatatttcgacGTAATG
TTTTCGAATCGTCTGTACCAAGTTTTCCAGATGAaagtattttattgttt
tcacaACTTTCATAATAACTGGTCGATGAACTGGATGTGATTAGTGGGAA
TGCCTCATGCAATTCGTCATCAATATTCTTTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057165-exon-scaffold_285-1491911889:581155..582417 | TCONS_00057165-exon-scaffold_285-1491911889:581155..582417 | Clytia hemisphaerica | exon |
| TCONS_00057165-exon-scaffold_285-1510915933:581155..582417 | TCONS_00057165-exon-scaffold_285-1510915933:581155..582417 | Clytia hemisphaerica | exon |
| TCONS_00057165-exon-scaffold_285-1575043694:581155..582417 | TCONS_00057165-exon-scaffold_285-1575043694:581155..582417 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:581155..582417 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002293 | AA/rel_permease1 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0015171 | amino acid transmembrane transporter activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0003333 | amino acid transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0003333 |
amino acid transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0015171 |
amino acid transmembrane transporter activity |
Blast
The following BLAST results are available for this feature:
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