TCONS_00057177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057177
Unique NameTCONS_00057177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length995

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057177 ID=TCONS_00057177|Name=TCONS_00057177|organism=Clytia hemisphaerica|type=transcript|length=995bp
CCAACTTAATGCTACCTCCATTAAAATCGATTTATCTGCCGTGCCAAGGA
TAAGATACTCTATATATAAAGctgAAGAGAATTTCACAATTAAATTAAAC
GAAGATTTTGTCTCAAACAAACAACATTGTACCTCACTTAGAAAGAAAGA
TATAACCATTCCTTTTCTGCTAAAATTCCCTGAATCTGCATTCGGGAATG
TGACTGGTTCGTTAACAAAATGGAAACCAATCATTATGAGAAAGGGGAAA
ACTGTCAACAGATATCGAGTTACTTGGGCAATCAAAAGAAATCCCAAGAG
AATAAAATGTCCAAACAAAACGTCTTTTGTCAAACTTGGAACCACTCTCA
TTCGAGATAAAACTCGAAATATATCAAGACCCTTGATGTTCAAAGTCACA
TATAGCTGCAAGAAGAAATCCTCAATAGATTTAGGTGAATTGTCGGAAAA
GAAGACATCCTTGGTTGATTTCACTAAAAATAATCTACCATGGGCTGAGG
TCAAACTGACGAAAATTCAAAAAGGAAGATACAATCGACCACCTGTGGTT
GCTAATGGTTACGAAGTAGTTGTTATTGAAGGTTGTAGAGGAACTGTGAA
AATACCAGTATTTGACCCAGATGGAAACGAGATCAAGTGTAAATTATTGA
AAACAACTTTTGAATGTCGGTCAAAAGATTGTAATCAGCTATCATACTTT
ATTGTGGATGAGATAAACTGCATGATAACATTTACTGGTGCTAAACCAAA
TGCATCGACCAATCACCATACAATGTCAATGCATATTGAAGattttgacc
aatcagaaaGCAGTATCACTGGCCTCAGCCAATCATTAAGCCGCGTTCGT
TTCGacatgaaaatcaaatttttatcgAGGAAAACTACAGAATGCGGGAA
TAGGCCGAAGCTCATTCGGACTCCCTTTGAAAACTGTCGATCTGTGAAAA
TTGGAGAAAGATTAAAGTTAAAGTTTGGTGCAAAAGAAAATGCAG
Run BLAST on NCBI

transcript from alignment at scaffold_286:185721..192466+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057177 ID=TCONS_00057177|Name=TCONS_00057177|organism=Clytia hemisphaerica|type=transcript|length=6746bp|location=Sequence derived from alignment at scaffold_286:185721..192466+ (Clytia hemisphaerica)
CCAACTTAATGCTACCTCCATTAAAATCGATTTATCTGCCGTGCCAAGGA TAAGATACTCTATATATAAAGGTTGGTAAACGTGATCGAATCTTCAGATG TTCAAATTTTGGTACACCTCCAGTCATATATACAGTCAGTTTGACTCATc ataatttcaaattattctaCTGGTGACCTGGGGGTGGGGGGGGGCANNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNaaattgcttcattagtttttcctgatttttggc agaaagatagagtgcaaggtaccctaaaatgtggctgaagtaatttttct cggaaattttttttcgtcgtaaaatacggatctTCGCAAGAttaggccaa aaactacctaaaaataagtttttttggacttggtgcaatattgcttcatt agtttttcctgattttttggacaaagatgaagggcaaggttctctaaaac gtgactgaagtagtttttttcggaaaatttattttggtcgtaaaaatcgg attttcttatttggggaaattcccttttgtcatatttagggaaaatgagc atttctcgagattggcttggtgTNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTG GTGAGAATCTTTAAGGTCGCTTCAAACATTACACATAAATTTCACAACAA TTTCGTtttctttcatctttttcaaTACATATTATTGTTCAATGACTGAA CACGAATAGTGTTCAAATGTCTATTTAAATTAGAGGCTAATAGTCTATTC TAGTTTATCAGTCTCAATATTATGCCTCATTTAGAACTATAgtattcact ttttttcaattttagctgAAGAGAATTTCACAATTAAATTAAACGAAGAT TTTGTCTCAAACAAACAACATTGTACCTCACTTAGAAAGAAAGATATAAC CATTCCTTTTCTGCTAAAATTCCCTGGTAAGTGAAACTCCAACTTCTCTA CATTTGATTACCATACTTGGATTGAATTTATGCATTTTCCATAGCTTTTT GAACTGTTTTTTAACATTTGATATAAAGGTGTGTGTCCTAATACTTGAAT TGAAATTGTATTCCCCTTTATGCCTTTTCCATAGCTTTTTCTGTACTCTt ttcttacacccctgtctaaGTGACACAGGATACGCCGGAATTGAATAAAG GTGTGTTCTAATCAATGATTTTTGACCGGGGTAGAGAATTTCAAGAGAAT TTAGTCGGGATTACTCGTTATCACACCAGCTTAAAATTAGGCCTTTTCTG GACAATTTTTTTCACCAGGTTAGGGGTGTTTCTAGGTTGATGTGAAAGGA TGTACTATTTTCTGGCGCGTATATGGCTGTTGTTTTAGTATTTGCCTTTT TGATTCATCTGGCTTCAGATGAACAGGGGTGTTAaaatgcacgtttttta taagaatgcccAAAATTTCAAAGCGTTTGGATGTTCAATTTTACAGTTTC TAGCCTAAAATTGATCTCAAAATGCTctgattttcaacattttgtgagta ttagTTGTAGGTTTGATTGGATgtccgcaaagccttagaatgttcttaac ttgctcttaacattttacccatggaagccttatgttcttatatagtttgt tctcaaattaaaaaaaagactttgatttattgtttagaacttaaagtttc atgccgcccgtatggacgacaatcatcagctaataaaaatcgtttgaaaa atattcatatacAATGGCTTCTTCGTCTGAAATTCTAACGTCAATTTTTA GGTGACGCCGAAGTTCatgagtaaatttttatttctgtGTCAACATTTTG TGACAATTTCAGTTCGTTTATTCAATAAGTTTTTGCCTGGGTAATTGGCG AATTCAAATTTCTCGCACAAACAAAGTTGACAGTTTTTTGCTTCAGGTGA GTATGCTTTCGCGTGTCTCACAACTCTCCAAGTTACCGATGGCGTACCGT TTAGTGTGTGAAAGAAGTTTTATGTGTCGAGTGtctatagtttgttctca taagaaatatacatcactataattttgtttgcttttagAATCTGCATTCG GGAATGTGACTGGTTCGTTAACAAAATGGAAACCAATCATTATGAGAAAG GGGAAAACTGTAAGTGTGTTCGGTTCGGTTCGGTTCATTGAGGaaacacg tttttataagagaaGTTAAATTTGGATAGCCTTCGgctgttcttaacatt tttagttcaagcctaaaaaggttcttaacctgttcttattttcagtattt tgtGAGTATTCTTGTGCAATTTACTTAAACTGAGTGttctagagtccgca aagctttAATATGGTCTTAACTTATCATTACCATTTATTGTTAGGCGGTt aattaatacaataatgaccagtTTTTTACGGTCTTTACTTGCCCTCACTA ACCgttcattattgtattaaagtCAAACGCTTTTTTTGCCATCATTGTTT TATCACAGATTTATAAAATGTATAAATTTTCAACTGAGGATTGTTTGAAT AAGACACATGAAACTGACAGTattgaaacaataattttcattacttcAAC TATAtgataaaatttataaatatatattgttgctattgttttaaatgcaa agcttctgattggtcaagcgctgaaattctattgtaatgtgacgtgacct aggtaggatttccttaCTAgatacggcacacttttcagccaaagcacgac atctagcctatcgggctttataaatctgtggttTTATCTAATACCTGTAT TCATTTCTTTCGCCAGAAGGTCAACAGATATCGAGTTACTTGGGCAATCA AAAGAAATCCCAAGAGAATAAAATGTCCAAACAAAACGTCTTTTGTCAAA CTTGGAACCACTCTCATTCGAGATAAAACTCGAAATATATCAAGACCCTT GATGTTCAAAGTCACATATAGCTGCAAGAAGAAATCCTCAATAGATTTAG GTGAATTGTCGGAAAAGAAGACATCCTTGGTTGATTTCACTAAAAATAAT CTACCATGGGCTGAGGTCAAACTGACGAAAATTCAAAAAGGAAGATACAA TCGACCACCTGTGGTTGCTAATGGTTACGAAGTAGTTGTTATTGAAGGTT GTAGAGGAACTGTGAAAATACCAGGTAATTCTACAATCACCTGCAAAAAT TATGAGACATTTTGGCTCATTTGGGTTCCCGCGCCCCCAATCAATGTTGC CTTGGTGGGACGTAATTTTGACTACGGAAAATACTTGGATTCAACCAACA TTACCTTAGGGGGGAGGGGAACTCACCAGTCTCATGAATTTTTGCAGAAG ATTGTAGGTAAATAGTCTGACAAAGTCTCTTTGTACTATTTGTACTACAC ATTCTTATAcaagcaaccaggttgctaagtAACTAAGGCTCAATTTTGCC AATTCCTTTTCACTATCTTCGTTaattaaaagctttttagacaATCTAAC CATGGTTGTTATGGCAACCCTTgcccaataagcataaatataatataata tcaAGGGGTgttcaaatatttcagaaaatgaaCGCTAAGCAACCTAGAGA CTGACCTGAAAATTGGAGTTGGTTATAAAGAAATATGTGTACCCTCCATT CTACAGTTTTCCTACTGTCTTAACCCTTAGAAGGCGAAAGGCGTATATAT ACGtcttgaaaaggtcattttaccgatacacaatcttttggtcataactc ctgaccacttgagattcagagaaaaaaaatctgctattttttgtagctga gaaaaagagctttccaacgataccaaagctGATACCTGAATCATTTGTCC TGGTcaagaaattgcctttgaaagaataaatttcccgaaaaaaatgatga actttttggcctttttcaaaaaagttagcggcTTGGAAAGGTCAAGATTG ATCTTCTTCCATCTCATCTTCTCATTCCTTATAAGGAATAACCAAACAAA TCATCTCAAAATAAATATCAAGCCTTCGTTTTCACTTTAATTTTTAGTAT TTGACCCAGATGGAAACGAGATCAAGTGTAAATTATTGAAAACAACTTTT GAATGTCGGTCAAAAGATTGTAATCAGCTATCATACTTTATTGTGGATGA GGTAATCAATAATTTTGTTCTTTGAAGTCATGATATCGAATTTCAAGTAC ATTTAGTCTTTTTCACCTTGAAGTTAAAATACAACCGTTTTTAACGAATT CAAGGAAATTCGATTTGTCACCTTTAATCCAATTTTCGTTTGAACACTTT TATACGatttcctcaaattcgcgaaagaaaaaaaattgtaaacttCGTGA TTTCTCGACCTCGAAATTGTGATTTGAAACTCAATcattctgtaattcga acaaaaaacaATTAGCTTACCATAACTCGAATCCGTCTATCattttataa ttgaaaaaaaagaaaatcttggttcattaaagtttgaaaagtaaCAGTCT TTGGACATTTTAGATAAACTGCATGATAACATTTACTGGTGCTAAACCAA ATGCATCGACCAATCACCATACAATGTCAATGCATATTGAAGattttgac caatcagaaaGCAGTATCACTGGCCTCAGCCAATCATTAAGCCGCGTTCG TTTCGacatgaaaatcaaatttttatcgAGGAAAACTACAGAATGCGGGA ATAGGCCGAAGCTCATTCGGACTCCCTTTGAAAACTGTCGATCTGTGAAA ATTGGAGAAAGATTAAAGTTAAAGTTTGGTGCAAAAGAAAATGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036030XLOC_036030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057177-exon-scaffold_286-1491911889:185721..185791TCONS_00057177-exon-scaffold_286-1491911889:185721..185791Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1510915933:185721..185791TCONS_00057177-exon-scaffold_286-1510915933:185721..185791Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1575043694:185721..185791TCONS_00057177-exon-scaffold_286-1575043694:185721..185791Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1491911889:188536..188646TCONS_00057177-exon-scaffold_286-1491911889:188536..188646Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1510915933:188536..188646TCONS_00057177-exon-scaffold_286-1510915933:188536..188646Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1575043694:188536..188646TCONS_00057177-exon-scaffold_286-1575043694:188536..188646Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1491911889:189759..189829TCONS_00057177-exon-scaffold_286-1491911889:189759..189829Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1510915933:189759..189829TCONS_00057177-exon-scaffold_286-1510915933:189759..189829Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1575043694:189759..189829TCONS_00057177-exon-scaffold_286-1575043694:189759..189829Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1491911889:190490..190844TCONS_00057177-exon-scaffold_286-1491911889:190490..190844Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1510915933:190490..190844TCONS_00057177-exon-scaffold_286-1510915933:190490..190844Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1575043694:190490..190844TCONS_00057177-exon-scaffold_286-1575043694:190490..190844Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1491911889:191718..191821TCONS_00057177-exon-scaffold_286-1491911889:191718..191821Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1510915933:191718..191821TCONS_00057177-exon-scaffold_286-1510915933:191718..191821Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1575043694:191718..191821TCONS_00057177-exon-scaffold_286-1575043694:191718..191821Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1491911889:192184..192466TCONS_00057177-exon-scaffold_286-1491911889:192184..192466Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1510915933:192184..192466TCONS_00057177-exon-scaffold_286-1510915933:192184..192466Clytia hemisphaericaexon
TCONS_00057177-exon-scaffold_286-1575043694:192184..192466TCONS_00057177-exon-scaffold_286-1575043694:192184..192466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:185721..192466 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (0.742801 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00621874 0.143825 0 0 0 0 0 0 0 0 0.122676 0 0 0.108873 0 0.115812 0 0 0 0.164218 0.502911 0 0 0 0 0.742801 0.120213 0 0 0.220617
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900Sequence
Match NameE-valueIdentityDescription
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