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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057184 ID=TCONS_00057184|Name=TCONS_00057184|organism=Clytia hemisphaerica|type=transcript|length=1464bp
CGGACCCTCCACCAGCTACCGGTATCGAGGTCTTCAGTCACGGTACAGGT
TTAATCATTGCTACAATTGGACTGTTCGGAAACATCATAACAATCCTTGT
TTGGCGAGAGAAAATCAAATCCAAAGCTACAAAATCAAAAGCAACAATCA
TCCTCTTAACAATCTTAGCAATTTGTGATTGTTTCTTACTCCTCGATTTT
CTGCTATACGACACTCTACCATCATTCCTACCTAATGTCAAAAACATCTG
GACATACGCCTGGTGCTATGTTTGGATTTTGAATCCAGTATTCTACATCT
CCTGTGTGGCTAGCATCTGGATGATTTGCATGATCACCCTAAACAGATTC
ATAATGGTTGCAATCCCAACGAAAGCTGCTTCTTTGTTTACATCAACACG
TTCCTGTATTACATCATTCGGAATTATCATGTTTGCAATCGTTATGTCTT
TACCAGaatttttcacctttcaaatcaTCACCACAAACACCACCACCAAT
AACACAATCATCTTGGAAAGATCGTCATTTGGCCAATCACATGATGCTTT
AGAATATGAATTTTGGCTACATTGCATGATTTTAGTGTTAGGGCCTTGGA
TCATGATTGCAATATTGAATATCTTGATTATCGTTTTGTTGAGAAAACAA
tgggattttcgaaaaaaattccaagTGCAAAAGGTGAAGCATACACAAAA
TAAACAATACAGACAAGAGATCAGTTTGACAAAGACTTTAGTAGCAATCA
CCACTTTCTTCTTGTTGGTTTTGATCTGGCAATGTATCACACAATGTTTC
TGGATGAGAGGCTATGgtatTAAACATGATGTGAACACTTGGAAGTACGT
TCAAAAAGTATTTGCATTTGCCAAGCTTGGTGTCATCATAAATGCTGCCA
CAAACTGGATATTCCTTTGTGGGACATGTTCAGTCTTCCGGAAAGAGCTG
CGAAAGTTCGTAGGTTGGAAGAGAAGGAGCATGAATAACAATTCAAATGT
TTTAACTATTCAAGGGAGCACAGGCTAAGAGGGGATGTTtcattgagttt
taagcccgaagggctagaggcaaaactttaacccttctcaggcaagagaa
attaaaGCCTCTTACATGTTttgcaagtgtatgccccttggtcaggctcg
tgtatgcttaagttctcaaagcatctaggcatagtttatgcttattatat
gcttaagaatcatgcttatgattcaccccgagccaagtttttagtgaaat
ttcagaaattttgtaaaaacttgttcagattttggaagCAGTGGAATGTT
AGCTAGCCGtgaaatgtcttattttttacttgacctctaccaaacctttt
taaacagataaaaatgaacacttgaaaaatattttaggctgacatatatg
ctcatgttatgcttaggaattctgcaaatctgagccttcatatgcttata
agcgttatgcttat Run BLAST on NCBI protein sequence of TCONS_00057184-protein >TCONS_00057184-protein ID=TCONS_00057184-protein|Name=TCONS_00057184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
DPPPATGIEVFSHGTGLIIATIGLFGNIITILVWREKIKSKATKSKATII
LLTILAICDCFLLLDFLLYDTLPSFLPNVKNIWTYAWCYVWILNPVFYIS
CVASIWMICMITLNRFIMVAIPTKAASLFTSTRSCITSFGIIMFAIVMSL
PEFFTFQIITTNTTTNNTIILERSSFGQSHDALEYEFWLHCMILVLGPWI
MIAILNILIIVLLRKQWDFRKKFQVQKVKHTQNKQYRQEISLTKTLVAIT
TFFLLVLIWQCITQCFWMRGYGIKHDVNTWKYVQKVFAFAKLGVIINAAT
NWIFLCGTCSVFRKELRKFVGWKRRSMNNNSNVLTIQGSTG Run BLAST on NCBI transcript from alignment at scaffold_286:459944..462752+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057184 ID=TCONS_00057184|Name=TCONS_00057184|organism=Clytia hemisphaerica|type=transcript|length=2809bp|location=Sequence derived from alignment at scaffold_286:459944..462752+ (Clytia hemisphaerica)
CGGACCCTCCACCAGCTACCGGTATCGAGGTCTTCAGTCACGGTACAGGT
TTAATCATTGCTACAATTGGACTGTTCGGAAACATCATAACAATCCTTGT
TTGGCGAGAGAAAATCAAATCCAAAGCTACAAAATCAAAAGCAACAATCA
TCCTCTTAACAATCTTAGCAATTTGTGATTGTTTCTTACTCCTCGATTTT
CTGCTATACGACACTCTACCATCATTCCTACCTAATGTCAAAAACATCTG
GACATACGCCTGGTGCTATGTTTGGATTTTGAATCCAGTATTCTACATCT
CCTGTGTGGCTAGCATCTGGATGATTTGCATGATCACCCTAAACAGATTC
ATAATGGTTGCAATCCCAACGAAAGCTGCTTCTTTGTTTACATCAACACG
TTCCTGTATTACATCATTCGGAATTATCATGTTTGCAATCGTTATGTCTT
TACCAGaatttttcacctttcaaatcaTCACCACAAACACCACCACCAAT
AACACAATCATCTTGGAAAGATCGTCATTTGGCCAATCACATGATGCTTT
AGAATATGAATTTTGGCTACATTGCATGATTTTAGTGTTAGGGCCTTGGA
TCATGATTGCAATATTGAATATCTTGATTATCGTTTTGTTGAGAAAACAA
tgggattttcgaaaaaaattccaagGTAACGTATATTTTAAAGCCCTCTC
TACATGTacgcaaaatatttgacactctctaattcgatcctcAAGGACAA
AGATTCAATTCCCCTTGACAATTGAATTTAAGAGCGTCGACTGTATACCA
GGtagttaaaaaaatgttttaataaagtttaaattttgagGTAGTAAGCT
CTATTATCCATAAGTATCTGgcagtaacaccgattttctaTCGGCTTCAA
AATTTCGCACTTTCAAACTTCGGCCTATTTCGGAGcacccctcaaaattt
caaaattcaatttttctaatattttgaatatcttttttaaaaaaatgtat
gcCAAAATTTATTCGCTTAAATATTTGACACCTCAACTTTAATGTCTATT
TTGATTTCTTGCAGTGCAAAAGGTGAAGCATACACAAAATAAACAATACA
GACAAGAGATCAGTTTGACAAAGACTTTAGTAGCAATCACCACTTTCTTC
TTGTTGGTTTTGATCTGGCAATGTATCACACAATGTTTCTGGATGAGAGG
CTATGGTAAGAAATGTgacacagacccactggaaaatttggcagaaattt
tgtccccggcaggaaaataccctagaattgcAGCCCTTTTAAGAAATTAA
CTTTTATCTTATCCCATATGAGAtaatcaatgtttaaaaattgcacttca
aaaccatccccattgaattttttaagcttggaacaatagaatttatatcc
ctattgggatttcaatgggaatttctatccccattgagaaaAAGGTTTCA
CCAGGgatgtgagacagggttgtacaAAGTGTTGTTACAAAGCCCATCTA
ATGTTATACACATTAGAAGTGACTATAAAATTCTTTCAACGTTATATAAA
CTCCCGgggatactagggttgcgagctgacgggtgtGTGCCGGACAGACC
TTTGAGATTAGGACCCTTGCAGGGACTGCCAGGTTCTAAAAAGGCACATA
CTCGTACCCTTTGCCTTGGTACCTCCCCTGACAGAGACTTGAGGCGGATT
TTTTCAGTGTTACTCATGCCAGATAATTATCTTCTTGTATGGCTAATGAA
TAAAGGTACTCTTGACTAGACCCGAACAAAAACATAAAGTCTAAATCCCA
CCTCGATTTTCTTTGGTGCATACCTTGTTGTTGCTATGTATTTCCAAGGT
TTTTATCTGACGCCCAGTGTTTGTTGGGCAAGCAATAGCCTAGCTAAGag
gggtgcaaaatttgtgtaggagagcagatttttatgacactacACTACTG
GGCAAGGGCGTTTGAGGTCTGTGACACATGAGATGTTATTACAGTAGAGT
TTCCATATCTCGAACCTCTATGACTATAAtgcctccataactcgaattaT
CTTAAAAGCCTCATAAACATGTCTCTATAAATCGAACAAATGTGAGTGTG
cgagttatagagactttaCTGTAGTAAGAtgtcttcaaaatttcattttt
ttatttttcaggtatTAAACATGATGTGAACACTTGGAAGTACGTTCAAA
AAGTATTTGCATTTGCCAAGCTTGGTGTCATCATAAATGCTGCCACAAAC
TGGATATTCCTTTGTGGGACATGTTCAGTCTTCCGGAAAGAGCTGCGAAA
GTTCGTAGGTTGGAAGAGAAGGAGCATGAATAACAATTCAAATGTTTTAA
CTATTCAAGGGAGCACAGGCTAAGAGGGGATGTTtcattgagttttaagc
ccgaagggctagaggcaaaactttaacccttctcaggcaagagaaattaa
aGCCTCTTACATGTTttgcaagtgtatgccccttggtcaggctcgtgtat
gcttaagttctcaaagcatctaggcatagtttatgcttattatatgctta
agaatcatgcttatgattcaccccgagccaagtttttagtgaaatttcag
aaattttgtaaaaacttgttcagattttggaagCAGTGGAATGTTAGCTA
GCCGtgaaatgtcttattttttacttgacctctaccaaacctttttaaac
agataaaaatgaacacttgaaaaatattttaggctgacatatatgctcat
gttatgcttaggaattctgcaaatctgagccttcatatgcttataagcgt
tatgcttat Coding sequence (CDS) from alignment at scaffold_286:459944..462752+ >TCONS_00057184 ID=TCONS_00057184|Name=TCONS_00057184|organism=Clytia hemisphaerica|type=CDS|length=3078bp|location=Sequence derived from alignment at scaffold_286:459944..462752+ (Clytia hemisphaerica)
GACCCTCCACCAGCTACCGGTATCGAGGTCTTCAGTCACGGTACAGGTTT
AATCATTGCTACAATTGGACTGTTCGGAAACATCATAACAATCCTTGTTT
GGCGAGAGAAAATCAAATCCAAAGCTACAAAATCAAAAGCAACAATCATC
CTCTTAACAATCTTAGCAATTTGTGATTGTTTCTTACTCCTCGATTTTCT
GCTATACGACACTCTACCATCATTCCTACCTAATGTCAAAAACATCTGGA
CATACGCCTGGTGCTATGTTTGGATTTTGAATCCAGTATTCTACATCTCC
TGTGTGGCTAGCATCTGGATGATTTGCATGATCACCCTAAACAGATTCAT
AATGGTTGCAATCCCAACGAAAGCTGCTTCTTTGTTTACATCAACACGTT
CCTGTATTACATCATTCGGAATTATCATGTTTGCAATCGTTATGTCTTTA
CCAGaatttttcacctttcaaatcaTCACCACAAACACCACCACCAATAA
CACAATCATCTTGGAAAGATCGTCATTTGGCCAATCACATGATGCTTTAG
AATATGAATTTTGGCTACATTGCATGATTTTAGTGTTAGGGCCTTGGATC
ATGATTGCAATATTGAATATCTTGATTATCGTTTTGTTGAGAAAACAAtg
ggattttcgaaaaaaattccaagTGCAAAAGGTGAAGCATACACAAAATA
AACAATACAGACAAGAGATCAGTTTGACAAAGACTTTAGTAGCAATCACC
ACTTTCTTCTTGTTGGTTTTGATCTGGCAATGTATCACACAATGTTTCTG
GATGAGAGGCTATGgtatTAAACATGATGTGAACACTTGGAAGTACGTTC
AAAAAGTATTTGCATTTGCCAAGCTTGGTGTCATCATAAATGCTGCCACA
AACTGGATATTCCTTTGTGGGACATGTTCAGTCTTCCGGAAAGAGCTGCG
AAAGTTCGTAGGTTGGAAGAGAAGGAGCATGAATAACAATTCAAATGTTT
TAACTATTCAAGGGAGCACAGGCTAAGACCCTCCACCAGCTACCGGTATC
GAGGTCTTCAGTCACGGTACAGGTTTAATCATTGCTACAATTGGACTGTT
CGGAAACATCATAACAATCCTTGTTTGGCGAGAGAAAATCAAATCCAAAG
CTACAAAATCAAAAGCAACAATCATCCTCTTAACAATCTTAGCAATTTGT
GATTGTTTCTTACTCCTCGATTTTCTGCTATACGACACTCTACCATCATT
CCTACCTAATGTCAAAAACATCTGGACATACGCCTGGTGCTATGTTTGGA
TTTTGAATCCAGTATTCTACATCTCCTGTGTGGCTAGCATCTGGATGATT
TGCATGATCACCCTAAACAGATTCATAATGGTTGCAATCCCAACGAAAGC
TGCTTCTTTGTTTACATCAACACGTTCCTGTATTACATCATTCGGAATTA
TCATGTTTGCAATCGTTATGTCTTTACCAGaatttttcacctttcaaatc
aTCACCACAAACACCACCACCAATAACACAATCATCTTGGAAAGATCGTC
ATTTGGCCAATCACATGATGCTTTAGAATATGAATTTTGGCTACATTGCA
TGATTTTAGTGTTAGGGCCTTGGATCATGATTGCAATATTGAATATCTTG
ATTATCGTTTTGTTGAGAAAACAAtgggattttcgaaaaaaattccaagT
GCAAAAGGTGAAGCATACACAAAATAAACAATACAGACAAGAGATCAGTT
TGACAAAGACTTTAGTAGCAATCACCACTTTCTTCTTGTTGGTTTTGATC
TGGCAATGTATCACACAATGTTTCTGGATGAGAGGCTATGgtatTAAACA
TGATGTGAACACTTGGAAGTACGTTCAAAAAGTATTTGCATTTGCCAAGC
TTGGTGTCATCATAAATGCTGCCACAAACTGGATATTCCTTTGTGGGACA
TGTTCAGTCTTCCGGAAAGAGCTGCGAAAGTTCGTAGGTTGGAAGAGAAG
GAGCATGAATAACAATTCAAATGTTTTAACTATTCAAGGGAGCACAGGCT
AAGACCCTCCACCAGCTACCGGTATCGAGGTCTTCAGTCACGGTACAGGT
TTAATCATTGCTACAATTGGACTGTTCGGAAACATCATAACAATCCTTGT
TTGGCGAGAGAAAATCAAATCCAAAGCTACAAAATCAAAAGCAACAATCA
TCCTCTTAACAATCTTAGCAATTTGTGATTGTTTCTTACTCCTCGATTTT
CTGCTATACGACACTCTACCATCATTCCTACCTAATGTCAAAAACATCTG
GACATACGCCTGGTGCTATGTTTGGATTTTGAATCCAGTATTCTACATCT
CCTGTGTGGCTAGCATCTGGATGATTTGCATGATCACCCTAAACAGATTC
ATAATGGTTGCAATCCCAACGAAAGCTGCTTCTTTGTTTACATCAACACG
TTCCTGTATTACATCATTCGGAATTATCATGTTTGCAATCGTTATGTCTT
TACCAGaatttttcacctttcaaatcaTCACCACAAACACCACCACCAAT
AACACAATCATCTTGGAAAGATCGTCATTTGGCCAATCACATGATGCTTT
AGAATATGAATTTTGGCTACATTGCATGATTTTAGTGTTAGGGCCTTGGA
TCATGATTGCAATATTGAATATCTTGATTATCGTTTTGTTGAGAAAACAA
tgggattttcgaaaaaaattccaagTGCAAAAGGTGAAGCATACACAAAA
TAAACAATACAGACAAGAGATCAGTTTGACAAAGACTTTAGTAGCAATCA
CCACTTTCTTCTTGTTGGTTTTGATCTGGCAATGTATCACACAATGTTTC
TGGATGAGAGGCTATGgtatTAAACATGATGTGAACACTTGGAAGTACGT
TCAAAAAGTATTTGCATTTGCCAAGCTTGGTGTCATCATAAATGCTGCCA
CAAACTGGATATTCCTTTGTGGGACATGTTCAGTCTTCCGGAAAGAGCTG
CGAAAGTTCGTAGGTTGGAAGAGAAGGAGCATGAATAACAATTCAAATGT
TTTAACTATTCAAGGGAGCACAGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057184-exon-scaffold_286-1491911889:459944..460618 | TCONS_00057184-exon-scaffold_286-1491911889:459944..460618 | Clytia hemisphaerica | exon |
| TCONS_00057184-exon-scaffold_286-1510915933:459944..460618 | TCONS_00057184-exon-scaffold_286-1510915933:459944..460618 | Clytia hemisphaerica | exon |
| TCONS_00057184-exon-scaffold_286-1575043694:459944..460618 | TCONS_00057184-exon-scaffold_286-1575043694:459944..460618 | Clytia hemisphaerica | exon |
| TCONS_00057184-exon-scaffold_286-1491911889:461008..461148 | TCONS_00057184-exon-scaffold_286-1491911889:461008..461148 | Clytia hemisphaerica | exon |
| TCONS_00057184-exon-scaffold_286-1510915933:461008..461148 | TCONS_00057184-exon-scaffold_286-1510915933:461008..461148 | Clytia hemisphaerica | exon |
| TCONS_00057184-exon-scaffold_286-1575043694:461008..461148 | TCONS_00057184-exon-scaffold_286-1575043694:461008..461148 | Clytia hemisphaerica | exon |
| TCONS_00057184-exon-scaffold_286-1491911889:462105..462752 | TCONS_00057184-exon-scaffold_286-1491911889:462105..462752 | Clytia hemisphaerica | exon |
| TCONS_00057184-exon-scaffold_286-1510915933:462105..462752 | TCONS_00057184-exon-scaffold_286-1510915933:462105..462752 | Clytia hemisphaerica | exon |
| TCONS_00057184-exon-scaffold_286-1575043694:462105..462752 | TCONS_00057184-exon-scaffold_286-1575043694:462105..462752 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:459944..462752 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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