TCONS_00057196 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00057196
Unique Name	TCONS_00057196
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	887

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_286:639717..643954+
coding sequence from alignment at scaffold_286:639717..643954+

transcript sequence

>TCONS_00057196 ID=TCONS_00057196|Name=TCONS_00057196|organism=Clytia hemisphaerica|type=transcript|length=887bp
caagcaaggAACTAGAAGATAAATCAAGACACGAAAATGGTGTCATTTGA
TAGAGGGTGCTTCATTTTCTGTTTGATATCCTTGGTCATCTCATCTGTTT
ATTTGTATGCAATTGATGAAATACTCCTGGAGGAAGCCGCTGAGCTGTTT
GAAGAATCAGATTCATCGCGTGAAGATGACGACTCTGCTTTCGATATCAT
CGCAAAAACCAACCAAGCTGTTATGAATGGGAAAAATGCATTGTTTGAAG
GTGATATCCGTCTTGCTGACGGTCCTGAGGGTGATCCAGCCAATCAGAAT
GCAATCCGGTCAGAAACGTTGAAGCGTGCGTTGCGAAGAGATCAAGAGTA
TCTATGGATCGATCGAGTAGTTCCGTATGATTATTCTGATATGAAGGAGT
ATGAGCGGGAAGATATTGACAAAGCGATGGCCGAAATCTCCAGTGTATCC
TGCATTAAATTTGTTAAACATacaaatgaaagaaattgggTCCGCTTCGT
AAAAGAGAATGGATGCTGGTCCTCTGTTGGACGATTGTTTTGGGGGTCTT
TCGGACAAAAAATTAGTCTTGGCTCAGGATGTTTCAAGCATGGGATAATT
ATTCATGAAATTCTTCATGCATTGGGTTTCTGGCATGAGCAAAGTCGTCC
TGATCGCAATCAATATGTTCAAATTATGTGGGAAAATATTGCTGATGgtc
AAGCAcacaatttcgaaaaatatagtAACGAAAGAGTTGACGATTTGGGA
TCAATATATGATTATTCTTCTATTATGcattatggtaaaaagggatTTTC
CAAGAATGATAAACCCACCATTTTGGTAATTGGTGATCCAAATCAACAGC
TTGGCCAACGTGATAAACTATCAACAGAAGATATCAT

Run BLAST on NCBI

protein sequence of TCONS_00057196-protein

>TCONS_00057196-protein ID=TCONS_00057196-protein|Name=TCONS_00057196-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MVSFDRGCFIFCLISLVISSVYLYAIDEILLEEAAELFEESDSSREDDDS
AFDIIAKTNQAVMNGKNALFEGDIRLADGPEGDPANQNAIRSETLKRALR
RDQEYLWIDRVVPYDYSDMKEYEREDIDKAMAEISSVSCIKFVKHTNERN
WVRFVKENGCWSSVGRLFWGSFGQKISLGSGCFKHGIIIHEILHALGFWH
EQSRPDRNQYVQIMWENIADGQAHNFEKYSNERVDDLGSIYDYSSIMHYG
KKGFSKNDKPTILVIGDPNQQLGQRDKLSTEDI

Run BLAST on NCBI

transcript from alignment at scaffold_286:639717..643954+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00057196 ID=TCONS_00057196|Name=TCONS_00057196|organism=Clytia hemisphaerica|type=transcript|length=4238bp|location=Sequence derived from alignment at scaffold_286:639717..643954+ (Clytia hemisphaerica)
caagcaaggAACTAGAAGATAAATCAAGACACGAAAATGGTGTCATTTGA
TAGAGGGTGCTTCATTTTCTGTTTGATATCCTTGGTCATCTCATCTGTTT
ATTTGTATGCAATTGATGAAATACTCCTGGAGGAAGGTAAGTCGTGGTTT
AACTTCCTAAGATGACAATCAAACAAGATGAAAAATCATTACTTTTGTAA
ACTATTGTGAGCTGCAATAGACTCTCTATAACtggaatgtctccttaact
cgaagtTTTATAGCCCCTTCAGTTATAACAATACCTTGTACAAAAGGGGG
CTCAaaacaactttcgatctttcacttgtttgcaggatattgTTGCGTAA
AAAAAGTAGCTTTGATTTATCTGACTCAGCATGAAGACACTGCttaaaat
aagtttcttttattCCCGTAGAAAACCTTTTAACTTTGAGGTACTCTTAg
ctatacattttaaaactttacatTCAGTTTTGCCTTTCCAAAATTTATTT
GAGCTTGGTAATGTAACGTAAACTTGGTCCTTTTTCTGGTAATTCCACGA
GGGAGattatttctttttctatcTTTTATTTAAAGCCGCTGAGCTGTTTG
AAGAATCAGATTCATCGCGTGAAGATGACGACTCTGCTTTCGATATCATC
GCAAAAACCAACCAAGGTATAATATAGATTaacaaactagtctgttaata
gGCCTTATCGAAGTTTTTGATTattctaaaacagcgatgcattttgggat
tgttttgggtgtattacaatagaattccctcgaggcaTTCCTAAactatt
tgattattttcagcgggaacaaaaattagaggataattttccactgggga
cgatattttggccaatttttcagtgggaagggttcccagtgggtctgtga
gaaggggtgtgaTAAAGGTTAATAACAAGATTTCTCCTgtcttcaatttc
attttatttatgaTGATAtcttaactttctttttagCTGTTATGAATGGG
AAAAATGCATTGTTTGAAGGTGATATCCGTCTTGCTGACGGTCCTGAGGG
TGATCCAGCCAATCAGAATGCAATCCGGTCAGAAACGTTGAAGCGTGCGT
TGCGAAGAGATCAAGAGTATCTATGGATCGATCGAGTAGTTCCGTATGAT
TATTCTGATATGAAGGGTATGGATTTGTGATAACAGTAATCTTAAGGCCT
GTCGTTTTTGtgaggtcattggtcggttgaaaaatgaagcaattccattg
gtagAAATTGACGTAagggatgaaaaaagtagaacttacttcaacttttt
tttttgttcgcgcgaaacttttttatgacgtaatcttttcttcaggcaaa
acaggttaagaaaaaaactttcgcgcatttcgcgcgaaagtggagtccGG
CCTTTACGGAGCCATGGCTTGTAGAGTGAATGCGTGCATTGACGCCTTAT
GTGCTTAATTTACGGAAGCCAATGAAAGAGAAGCCTCAAGGGTTAGTGGG
GGTAACTCAAGGGAAACATAACAGATCATCTATTTTGCACACACCACGTT
ATGCTCTTAACGGATATGACGAATATGACGACCTGgccttttgcttgaaa
acgacaGCGACAGCGACcgggttctaatgtttatgaTTAGCGCTAGATTT
AGATTTTGGtacgattgttttgctttagccaatcaccgCGCTCTAAAGCT
CATTTGATATTCATtccaaatctggatgaaaagATAAAAGCGGTGCGCAA
AGTATCAGAATCTGCTTGGAAATTATACTTGTCCTTACATTTTGATCCTT
CTAtttatttttgcttattttataCTATGTCCGAAATAGTTGTCTAGCAT
GTTAAACACCAGctatttcaatcaaaaacttACCATTTCTTTTTGTATAG
AGTATGAGCGGGAAGATATTGACAAAGCGATGGCCGAAATCTCCAGTGTA
TCCTGCATTAAATTTGTTAAACATacaaatgaaagaaattgggTCCGCTT
CGTAAAAGAGAATGGGTAAGTGCACTGAACCATTATAGAGCAATCTGTCA
AAaactaggcttctgctcatcctctagcaaaaaaagtttcttatagaaat
ataggaagtatattataGTCAAAAACGAACTGTTCTCAAACTTTTCGTAA
CGACCTAATCAAATCTAAAACAAAAGCGTTTTCAATAGAAACGATCAGAA
CACTTTGGGTAATCAGAGAAGCTGGTTTTCTTTTCTATCCCATCTCTCTG
TTGAAAAAAGAGTTCCCCTAATGGCTGGCTGGTGCTACTTGAATATGACA
GAAAATACATTTGATATACCCACATCCCGCAGGTACTACTTTGCTCAAAA
CCAAAGAGAGTGTTTTTAACTTCCAGGGTCTTGATATGATAGGTCAATAG
GTAAGTGTGGCCTGTACCAGACAGACAAGACTTTTTCCAACATCTTTCTG
TCTACGCTTAACAAATATTTTCACTCCTCGCTTCtaatagcaagtttatg
tatttgcgctTTTGACGGTGACTGacgcgatttggaataacccgcagttt
tgactcACAAAATCGGGGACGATAagtgatttaccgtcgtcctcagtcag
tcaggatgtagaaaaattagaaccttaccgtctccgacGCAGAAAAACAC
CGGTAATTTTGAAGCTGTTATACAGTACAGTTTGAAGGAATTGTCATTAC
TTTAATGTTTTGTGAAACACTTTAAAAGTAATAGACAACAACTAAGCTGG
CTAATAGAACTATGATTTACTTATGACTGGTAGTGTAtatgcacttttga
ggacggcggagTGGCTGAAGCAATTTGGAAAAGCCCGCACTTCTGacctg
caaaatcgaggacggtaaaagtgctgatttaccgtcgtcctcagttggtc
atgatctagtcaaattagaaccttaccgtctccgtcgctgaaaagcacac
atacataaactcggtaatcgAAGTGCAAAGGCAGAGCATTTGGCTATGGT
GCGCGAGGTCATGGATTTAATCCCTGTACCGAAGTGGTACTTGGAGGAGC
ATCAAGATTGAAATTCCCTGTTCAGTCAATACATATTCAATATCCAAGAT
GATCGAATAGGTTTCGAGATTGAAATACCAAGTACAaaatttcccgccaa
aatttaatttttccatcatccgtcaaattaaattccttgccgatccgcca
aattaaattccttctgaaaaaactttttcggccatccggcaaattaaatt
ctcgctaaaatttcttcctttaatttACACAAATTGTAAATTTTCGCATA
AATTATGAGAAATTCACTTTACATAAAAATTTGCCTGCTTTTTCCGGGAC
ACAATGTAGAGTCAAAGTAATAACATTTTAATTAGTTTCTCTTATTTCTT
TTTCTCAGATGCTGGTCCTCTGTTGGACGATTGTTTTGGGGGTCTTTCGG
ACAAAAAATTAGTCTTGGCTCAGGATGTTTCAAGCATGGGATAATTATTC
ATGAAATTCTTCATGCATTGGGTTTCTGGCATGAGCAAAGTCGTCCTGAT
CGCAATCAATATGTTCAAATTATGTGGGAAAATATTGCTGATGGTCAGTT
TGTTCCTTTGATACAACTTTTTATTTGGACTTTTTTCTGATTGACGTTCT
CGAATTCGATTTTTAGGGTAATTTGATTTTCACTGAATAAAGGAGCGTAT
CGAAAAGTAAagcatcgaattagagagcgccaaCAGTAGTttgtttaaag
aaaacatttatcAGAGTCTTCATGCTGACttgcctgtaccagacgaccac
ggctttttcctcgacaccgttCCGTCTGTTACTTGCTTTTTACAATTATT
CCCCCAGAGATCTTTGGGGGGATAAAAATCCTCGGCTTTAAGCCAAAGAA
CCGTAGCTTTCGactgtaaaaaaaaactaaccAAAAGAATCTGTCAACGT
AAAGGAGAGTTTCAGTAAACAAAGCACAGACTGATAAAAAATCGCGTTTT
GGGATAGAGATAGGCCTGCTgacaaagttttttatttttattttttaggt
cAAGCAcacaatttcgaaaaatatagtAACGAAAGAGTTGACGATTTGGG
ATCAATATATGATTATTCTTCTATTATGcattatggtaaaaagggatTTT
CCAAGAATGATAAACCCACCATTTTGGTAATTGGTGATCCAAATCAACAG
CTTGGCCAACGTGATAAACTATCAACAGAAGATATCAT

Coding sequence (CDS) from alignment at scaffold_286:639717..643954+

>TCONS_00057196 ID=TCONS_00057196|Name=TCONS_00057196|organism=Clytia hemisphaerica|type=CDS|length=5094bp|location=Sequence derived from alignment at scaffold_286:639717..643954+ (Clytia hemisphaerica)
ATGGTGTCATTTGATAGAGGGTGCTTCATTTTCTGTTTGATATCCTTGGT
CATCTCATCTGTTTATTTGTATGCAATTGATGAAATACTCCTGGAGGAAG
CCGCTGAGCTGTTTGAAGAATCAGATTCATCGCGTGAAGATGACGACTCT
GCTTTCGATATCATCGCAAAAACCAACCAAGCTGTTATGAATGGGAAAAA
TGCATTGTTTGAAGGTGATATCCGTCTTGCTGACGGTCCTGAGGGTGATC
CAGCCAATCAGAATGCAATCCGGTCAGAAACGTTGAAGCGTGCGTTGCGA
AGAGATCAAGAGTATCTATGGATCGATCGAGTAGTTCCGTATGATTATTC
TGATATGAAGGAGTATGAGCGGGAAGATATTGACAAAGCGATGGCCGAAA
TCTCCAGTGTATCCTGCATTAAATTTGTTAAACATacaaatgaaagaaat
tgggTCCGCTTCGTAAAAGAGAATGGATGCTGGTCCTCTGTTGGACGATT
GTTTTGGGGGTCTTTCGGACAAAAAATTAGTCTTGGCTCAGGATGTTTCA
AGCATGGGATAATTATTCATGAAATTCTTCATGCATTGGGTTTCTGGCAT
GAGCAAAGTCGTCCTGATCGCAATCAATATGTTCAAATTATGTGGGAAAA
TATTGCTGATGgtcAAGCAcacaatttcgaaaaatatagtAACGAAAGAG
TTGACGATTTGGGATCAATATATGATTATTCTTCTATTATGcattatggt
aaaaagggatTTTCCAAGAATGATAAACCCACCATTTTGGTAATTGGTGA
TCCAAATCAACAGCTTGGCCAACGTGATAAACTATCAACAGAAGATATCA
TGGTGTCATTTGATAGAGGGTGCTTCATTTTCTGTTTGATATCCTTGGTC
ATCTCATCTGTTTATTTGTATGCAATTGATGAAATACTCCTGGAGGAAGC
CGCTGAGCTGTTTGAAGAATCAGATTCATCGCGTGAAGATGACGACTCTG
CTTTCGATATCATCGCAAAAACCAACCAAGCTGTTATGAATGGGAAAAAT
GCATTGTTTGAAGGTGATATCCGTCTTGCTGACGGTCCTGAGGGTGATCC
AGCCAATCAGAATGCAATCCGGTCAGAAACGTTGAAGCGTGCGTTGCGAA
GAGATCAAGAGTATCTATGGATCGATCGAGTAGTTCCGTATGATTATTCT
GATATGAAGGAGTATGAGCGGGAAGATATTGACAAAGCGATGGCCGAAAT
CTCCAGTGTATCCTGCATTAAATTTGTTAAACATacaaatgaaagaaatt
gggTCCGCTTCGTAAAAGAGAATGGATGCTGGTCCTCTGTTGGACGATTG
TTTTGGGGGTCTTTCGGACAAAAAATTAGTCTTGGCTCAGGATGTTTCAA
GCATGGGATAATTATTCATGAAATTCTTCATGCATTGGGTTTCTGGCATG
AGCAAAGTCGTCCTGATCGCAATCAATATGTTCAAATTATGTGGGAAAAT
ATTGCTGATGgtcAAGCAcacaatttcgaaaaatatagtAACGAAAGAGT
TGACGATTTGGGATCAATATATGATTATTCTTCTATTATGcattatggta
aaaagggatTTTCCAAGAATGATAAACCCACCATTTTGGTAATTGGTGAT
CCAAATCAACAGCTTGGCCAACGTGATAAACTATCAACAGAAGATATCAT
GGTGTCATTTGATAGAGGGTGCTTCATTTTCTGTTTGATATCCTTGGTCA
TCTCATCTGTTTATTTGTATGCAATTGATGAAATACTCCTGGAGGAAGCC
GCTGAGCTGTTTGAAGAATCAGATTCATCGCGTGAAGATGACGACTCTGC
TTTCGATATCATCGCAAAAACCAACCAAGCTGTTATGAATGGGAAAAATG
CATTGTTTGAAGGTGATATCCGTCTTGCTGACGGTCCTGAGGGTGATCCA
GCCAATCAGAATGCAATCCGGTCAGAAACGTTGAAGCGTGCGTTGCGAAG
AGATCAAGAGTATCTATGGATCGATCGAGTAGTTCCGTATGATTATTCTG
ATATGAAGGAGTATGAGCGGGAAGATATTGACAAAGCGATGGCCGAAATC
TCCAGTGTATCCTGCATTAAATTTGTTAAACATacaaatgaaagaaattg
ggTCCGCTTCGTAAAAGAGAATGGATGCTGGTCCTCTGTTGGACGATTGT
TTTGGGGGTCTTTCGGACAAAAAATTAGTCTTGGCTCAGGATGTTTCAAG
CATGGGATAATTATTCATGAAATTCTTCATGCATTGGGTTTCTGGCATGA
GCAAAGTCGTCCTGATCGCAATCAATATGTTCAAATTATGTGGGAAAATA
TTGCTGATGgtcAAGCAcacaatttcgaaaaatatagtAACGAAAGAGTT
GACGATTTGGGATCAATATATGATTATTCTTCTATTATGcattatggtaa
aaagggatTTTCCAAGAATGATAAACCCACCATTTTGGTAATTGGTGATC
CAAATCAACAGCTTGGCCAACGTGATAAACTATCAACAGAAGATATCATG
GTGTCATTTGATAGAGGGTGCTTCATTTTCTGTTTGATATCCTTGGTCAT
CTCATCTGTTTATTTGTATGCAATTGATGAAATACTCCTGGAGGAAGCCG
CTGAGCTGTTTGAAGAATCAGATTCATCGCGTGAAGATGACGACTCTGCT
TTCGATATCATCGCAAAAACCAACCAAGCTGTTATGAATGGGAAAAATGC
ATTGTTTGAAGGTGATATCCGTCTTGCTGACGGTCCTGAGGGTGATCCAG
CCAATCAGAATGCAATCCGGTCAGAAACGTTGAAGCGTGCGTTGCGAAGA
GATCAAGAGTATCTATGGATCGATCGAGTAGTTCCGTATGATTATTCTGA
TATGAAGGAGTATGAGCGGGAAGATATTGACAAAGCGATGGCCGAAATCT
CCAGTGTATCCTGCATTAAATTTGTTAAACATacaaatgaaagaaattgg
gTCCGCTTCGTAAAAGAGAATGGATGCTGGTCCTCTGTTGGACGATTGTT
TTGGGGGTCTTTCGGACAAAAAATTAGTCTTGGCTCAGGATGTTTCAAGC
ATGGGATAATTATTCATGAAATTCTTCATGCATTGGGTTTCTGGCATGAG
CAAAGTCGTCCTGATCGCAATCAATATGTTCAAATTATGTGGGAAAATAT
TGCTGATGgtcAAGCAcacaatttcgaaaaatatagtAACGAAAGAGTTG
ACGATTTGGGATCAATATATGATTATTCTTCTATTATGcattatggtaaa
aagggatTTTCCAAGAATGATAAACCCACCATTTTGGTAATTGGTGATCC
AAATCAACAGCTTGGCCAACGTGATAAACTATCAACAGAAGATATCATGG
TGTCATTTGATAGAGGGTGCTTCATTTTCTGTTTGATATCCTTGGTCATC
TCATCTGTTTATTTGTATGCAATTGATGAAATACTCCTGGAGGAAGCCGC
TGAGCTGTTTGAAGAATCAGATTCATCGCGTGAAGATGACGACTCTGCTT
TCGATATCATCGCAAAAACCAACCAAGCTGTTATGAATGGGAAAAATGCA
TTGTTTGAAGGTGATATCCGTCTTGCTGACGGTCCTGAGGGTGATCCAGC
CAATCAGAATGCAATCCGGTCAGAAACGTTGAAGCGTGCGTTGCGAAGAG
ATCAAGAGTATCTATGGATCGATCGAGTAGTTCCGTATGATTATTCTGAT
ATGAAGGAGTATGAGCGGGAAGATATTGACAAAGCGATGGCCGAAATCTC
CAGTGTATCCTGCATTAAATTTGTTAAACATacaaatgaaagaaattggg
TCCGCTTCGTAAAAGAGAATGGATGCTGGTCCTCTGTTGGACGATTGTTT
TGGGGGTCTTTCGGACAAAAAATTAGTCTTGGCTCAGGATGTTTCAAGCA
TGGGATAATTATTCATGAAATTCTTCATGCATTGGGTTTCTGGCATGAGC
AAAGTCGTCCTGATCGCAATCAATATGTTCAAATTATGTGGGAAAATATT
GCTGATGgtcAAGCAcacaatttcgaaaaatatagtAACGAAAGAGTTGA
CGATTTGGGATCAATATATGATTATTCTTCTATTATGcattatggtaaaa
agggatTTTCCAAGAATGATAAACCCACCATTTTGGTAATTGGTGATCCA
AATCAACAGCTTGGCCAACGTGATAAACTATCAACAGAAGATATCATGGT
GTCATTTGATAGAGGGTGCTTCATTTTCTGTTTGATATCCTTGGTCATCT
CATCTGTTTATTTGTATGCAATTGATGAAATACTCCTGGAGGAAGCCGCT
GAGCTGTTTGAAGAATCAGATTCATCGCGTGAAGATGACGACTCTGCTTT
CGATATCATCGCAAAAACCAACCAAGCTGTTATGAATGGGAAAAATGCAT
TGTTTGAAGGTGATATCCGTCTTGCTGACGGTCCTGAGGGTGATCCAGCC
AATCAGAATGCAATCCGGTCAGAAACGTTGAAGCGTGCGTTGCGAAGAGA
TCAAGAGTATCTATGGATCGATCGAGTAGTTCCGTATGATTATTCTGATA
TGAAGGAGTATGAGCGGGAAGATATTGACAAAGCGATGGCCGAAATCTCC
AGTGTATCCTGCATTAAATTTGTTAAACATacaaatgaaagaaattgggT
CCGCTTCGTAAAAGAGAATGGATGCTGGTCCTCTGTTGGACGATTGTTTT
GGGGGTCTTTCGGACAAAAAATTAGTCTTGGCTCAGGATGTTTCAAGCAT
GGGATAATTATTCATGAAATTCTTCATGCATTGGGTTTCTGGCATGAGCA
AAGTCGTCCTGATCGCAATCAATATGTTCAAATTATGTGGGAAAATATTG
CTGATGgtcAAGCAcacaatttcgaaaaatatagtAACGAAAGAGTTGAC
GATTTGGGATCAATATATGATTATTCTTCTATTATGcattatggtaaaaa
gggatTTTCCAAGAATGATAAACCCACCATTTTGGTAATTGGTGATCCAA
ATCAACAGCTTGGCCAACGTGATAAACTATCAACAGAAGATATC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036042	XLOC_036042	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00057196-protein	TCONS_00057196-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_286	supercontig	scaffold_286:639717..643954 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.30239	2.55136	2.01441	1.56504	6.49207	4.46097	4.37285	4.66065	1.01419	9.55829	2.33263	1.01064	0	0	0.029713	0.0637733	9.74187	20.5741	0.166874	0	0.657706	0.370161	0.959955	1.4182	0.224725	0.300842	0.143502	0.382872	0.813105	0.650906

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001506	Peptidase_M12A
IPR006026	Peptidase_Metallo
IPR024079	MetalloPept_cat_dom
IPR034035	Astacin-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004222	metalloendopeptidase activity
GO:0008237	metallopeptidase activity
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0008270	zinc ion binding

Blast

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BLAST of TCONS_00057196 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 5.240e-38
Identity = 85/217 (39.17%), Postives = 115/217 (53.00%), Query Frame = 1

Query:  241 LFEGDIRLADGPEGDPANQNAIRSETLKRALRRDQEYLWIDRVVPYDYSDMKEYERED-IDKAMAEISSVSCIKFVKHTNERNWVRFVKENGCWSSVGRLFWGSFGQKISLGSGCFKHGIIIHEILHALGFWHEQSRPDRNQYVQIMWENIADGQAHNFEKYSNERVDDLGSIYDYSSIMHYGKKGFSKNDKPTILV-IGDPNQQLGQRDKLSTEDI 885
            LFEGDIRL         ++  IR+  +       ++Y W    +PY   D  E   +  I  A       +CI F     E N++   K +GCWSSVG    G   Q++S+G+ C +   + HE LHALGFWHEQSR DR+ YV+IMW+ I  G+ HNF  YS++  D L   YDY+S+MHY K  F    +PTI+  I D    +GQR   S  D+
Sbjct:   48 LFEGDIRL---------DRAQIRNSIIG------EKYRW-PHTIPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVFKGSGCWSSVGNRRVGK--QELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDL 246

The following BLAST results are available for this feature:

BLAST of TCONS_00057196 vs. Swiss-Prot (Human)

BLAST of TCONS_00057196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MEP1B	5.240e-38	39.17	Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=...	[more]

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TCONS_00057196 (transcript) - C. hemisphaerica