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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057224 ID=TCONS_00057224|Name=TCONS_00057224|organism=Clytia hemisphaerica|type=transcript|length=1602bpRun BLAST on NCBI protein sequence of TCONS_00057224-protein >TCONS_00057224-protein ID=TCONS_00057224-protein|Name=TCONS_00057224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp MFARATFTDPGVYPRAPESEDEENDLRQPLYRNIEIKGITVKMKWCETCRRun BLAST on NCBI transcript from alignment at scaffold_286:1011859..1032639+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057224 ID=TCONS_00057224|Name=TCONS_00057224|organism=Clytia hemisphaerica|type=transcript|length=20781bp|location=Sequence derived from alignment at scaffold_286:1011859..1032639+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_286:1011859..1032639+ >TCONS_00057224 ID=TCONS_00057224|Name=TCONS_00057224|organism=Clytia hemisphaerica|type=CDS|length=6048bp|location=Sequence derived from alignment at scaffold_286:1011859..1032639+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00057224 vs. Swiss-Prot (Human)
Match: ZDHC8 (Probable palmitoyltransferase ZDHHC8 OS=Homo sapiens GN=ZDHHC8 PE=1 SV=3) HSP 1 Score: 242.276 bits (617), Expect = 2.439e-70 Identity = 121/219 (55.25%), Postives = 156/219 (71.23%), Query Frame = 2
Query: 170 CPYLVEEYHFAIAIVNGVLTLTVHLMFARATFTDPGVYPRAPESEDEENDLRQPLYRNIEIKGITVKMKWCETCRFYRPPRCSHCSVCNNCVEVFDHHCPWVDNCIGKKNYRYFFFFVTSLSLHILTVIAFTILFVVKKKGEGEGMVQXXXXXXXXXXXXXXSFPVLGLSIFHIGLVALGRTTNEQVTGKFGSGHNPFDLGCYQNCCTALFGPLPPRYL 826
CP+L A+ + NG++ L V F+ ATF DPGV+PRA E ED+E+D R PLY+N++++GI V+MKWC TC FYRPPRCSHCSVC+NCVE FDHHCPWV+NCIG++NYRYFF F+ SLS H++ V+AF +++V+ EG G + ++ +AGL PV+GL+ FH+ LV GRTTNEQVTGKF G NPF GC N L PL PRY+
Sbjct: 36 CPWLTRAVSPAVPVYNGIIFLFVLANFSMATFMDPGVFPRADEDEDKEDDFRAPLYKNVDVRGIQVRMKWCATCHFYRPPRCSHCSVCDNCVEDFDHHCPWVNNCIGRRNYRYFFLFLLSLSAHMVGVVAFGLVYVL-NHAEGLGAAHTTITMAVMCVAGLFFIPVIGLTGFHVVLVTRGRTTNEQVTGKFRGGVNPFTRGCCGNVEHVLCSPLAPRYV 253 The following BLAST results are available for this feature:
BLAST of TCONS_00057224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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