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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057228 ID=TCONS_00057228|Name=TCONS_00057228|organism=Clytia hemisphaerica|type=transcript|length=5873bpRun BLAST on NCBI protein sequence of TCONS_00057228-protein >TCONS_00057228-protein ID=TCONS_00057228-protein|Name=TCONS_00057228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1484bp MSEWARFFPLDATKADNTSVKAKSDSLPLLVEIILGESKMFYPSTLVLIQRun BLAST on NCBI transcript from alignment at scaffold_286:297..22172- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057228 ID=TCONS_00057228|Name=TCONS_00057228|organism=Clytia hemisphaerica|type=transcript|length=21876bp|location=Sequence derived from alignment at scaffold_286:297..22172- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_286:297..22172- >TCONS_00057228 ID=TCONS_00057228|Name=TCONS_00057228|organism=Clytia hemisphaerica|type=CDS|length=57915bp|location=Sequence derived from alignment at scaffold_286:297..22172- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057228 vs. Swiss-Prot (Human)
Match: MED13 (Mediator of RNA polymerase II transcription subunit 13 OS=Homo sapiens GN=MED13 PE=1 SV=3) HSP 1 Score: 190.274 bits (482), Expect = 4.285e-48 Identity = 106/285 (37.19%), Postives = 163/285 (57.19%), Query Frame = 1
Query: 118 NVFSLADTSGLKWKKYA-----SACLNSDSTENDPILSAYSIARAADVLCVWKRVTQPGLTLDDSSPLFDCPKELIIFWYGDEPSLSEFPGPSLQEIEFGTADDGITSENLDSFFKAIHNVIEKNLLSDNFVRLGNWFTRPRSYEVTISNQNASALAFSFSIFIHGKSSVVASVNIKQKGVIRLLSKKDLQKASHQHGSFNSKEVLLAPFGLNGQLTGNSIPDTDSRSAKIMSEWARFFPLDATKADNTSVKA-----KSDSLPLLVEIILGESKMFYPSTLVLI 942
N+F LAD +G+KWKKY SA + TE DPILS++S ADVL VW+R +PG +EL IFW+G++PS ++ L E E G ++G++ E FKA+HN++E+ L++ NFVR+G WF +P + N+ + L+ SF+ F+HG S+V SV I Q + LLS++ + A + F +V+L PFGLNG LTG + +DS + K++ EW +F+P+ + + K + DSL VE+++ +M YP+ VL+
Sbjct: 18 NLFCLADLTGIKWKKYVWQGPTSAPILFPVTEEDPILSSFSRCLKADVLGVWRRDQRPGR------------RELWIFWWGEDPSFADLIHHDLSEEEDGVWENGLSYECRTLLFKAVHNLLERCLMNRNFVRIGKWFVKPYEKDEKPINK-SEHLSCSFTFFLHGDSNVCTSVEINQHQPVYLLSEEHITLAQQSNSPF---QVILCPFGLNGTLTGQAFKMSDSATKKLIGEWKQFYPISCCLKEMSEEKQEDMDWEDDSL-AAVEVLVAGVRMIYPACFVLV 285 HSP 2 Score: 130.183 bits (326), Expect = 8.630e-30 Identity = 86/267 (32.21%), Postives = 140/267 (52.43%), Query Frame = 1
Query: 4033 PFIVLYMVDPFNVES--QLNNYPHLWSYVGLMKSLLEMKNDLNDYLKENLLFEIIPLEQILNLTSKTGQPGGPHNSELKELALSVYSKCRPNALSYISKIDKCMTGFGVCHIRESLVHRRKRENNLPTTVYMPPYILSPSPKYLNHELKNVTKAKEVFALEKGT--NILFCCYCLSSDKQWMFVTCTDQLGELNETTMIRIAYPKR-KKNKGLIWSVSLNKLWQYLNGVLSFSICSWRIVLTKYGDVGVHELKELKAII-QKNIELL 4815
P IV+Y++DPF E+ + N +W+ +GL++ LEM L ++K + +IIP + +L + P + LK LA S +++CR L + + K +TGFG E+ + R + +Y PP+IL+P T+ E F E G N+LF YCLS D++W+ +CTD GEL ET +I I P R ++ K L KLW++ G++ S WR+V+ + G +G ELK+ ++ ++N++ L
Sbjct: 1637 PAIVVYIIDPFTYENTDESTNSSSVWT-LGLLRCFLEMVQTLPPHIKSTVSVQIIPCQYLLQPVKHEDREIYPQH--LKSLAFSAFTQCR-RPLPTSTNV-KTLTGFGPGLAMETALRSPDRPECI--RLYAPPFILAPV-------KDKQTELGETFG-EAGQKYNVLFVGYCLSHDQRWILASCTDLYGELLETCIINIDVPNRARRKKSSARKFGLQKLWEWCLGLVQMSSLPWRVVIGRLGRIGHGELKDWSCLLSRRNLQSL 1888 HSP 3 Score: 122.865 bits (307), Expect = 1.533e-27 Identity = 65/187 (34.76%), Postives = 104/187 (55.61%), Query Frame = 1
Query: 3343 KLLHDLKPVLESAFQKPLNKNSFDQTRIEGPLTFTSLN------SNKNVLSSIPPSTNGLLFSYDSDSFSVSPDAVKHWQRLFLEPLGGQRNVEYIVLLPDADVVVNGMKLFFKELNSLYESLNLGSHVPIVKELREGFLRISQKSVSPCASEVVDPWFDQS---NSNLMAKMKVVAQFCKRTLGSY 3876
++L L+PVL+ A QK K + ++GPLT+ + S S P L YD D +SP A+ +W+RL LEP G QR++ Y+VL P+ + ++NG K FF++L ++YES LG H P+ + L +G +R+ + + ++V WF Q+ N+ +K+K+ AQ C+ LG Y
Sbjct: 1280 RMLLSLQPVLQDAIQK---KRTVRPWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLLGYDYDYLVLSPFALPYWERLMLEPYGSQRDIAYVVLCPENEALLNGAKSFFRDLTAIYESCRLGQHRPVSRLLTDGIMRVGSTASKKLSEKLVAEWFSQAADGNNEAFSKLKLYAQVCRYDLGPY 1463 The following BLAST results are available for this feature:
BLAST of TCONS_00057228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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