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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057233 ID=TCONS_00057233|Name=TCONS_00057233|organism=Clytia hemisphaerica|type=transcript|length=1534bp
GTAAAAATTTCTATGAAAGAAGTAAGTCAAGAACAAGATATGGTGTCTTA
CGAAGGGCCATTCTCAAAACCATGGCAGGACAGTGATACAGTTTTGATTG
TGGAAGAAAAAGACCTTCACGTTCATTCGAATATTTTATCCATCGCTTCC
CCTTACTTCGAAAAAATGTTCAATGGAAATTTCAAAGAATCGCAAACCAA
ACGAGTTACTTTGGAAGGGAAATCTTTTGAGCTGATTGAGCAAATGTTGA
AGATTATTTATCCAAATGTGGATGCAGAATTTGAATTTAACACGAAGCTG
TGTGATGGTTGTTACCCAGAAGCGAACAACAAAAGGATACAACCATGTGA
AGATTGCACATTAGCTGAAGGATTGAACTCGTTGTGTGCAAAATGTGTCG
TCCCCGGAACAGAATTATGTCCAAAATGCaagaattactttttcaaatca
GAAGAGGGTCGATCACAACATTTCGAATGTTTGAGGAATCTGTCCAAATT
ACGTGATGAATACATTATTTCCTCATTGGAAAGGATCGTCGATGCCGAAG
TTCTCTCTATGAGCAAGTCTTTGGATGGGTATACAATCGAGTACACAATG
GAACTATTAGAATTGGCAGACCATCTGCAACATCAAGAATCGGCTGACCT
CTGTATACAGAATTTGACATCTCGATTAAGCAGCTATGGCACTTGTACCG
ATGATGGAGGAAACATAAGAAATGTGACTTTCGGGAAAAACATCAGTCCG
AAATCAAAGAACAAATTGAAAGGTTTGATAATGAAAAAGAGAATCGACGA
AgtagaaaaagaaatagaaCAGCTTGAGCAGAATGGCGATCAAAGCAAAA
CCACAACCCAAAAATCTGGCGGTTTTTCCTTTGGGCAGCAGCAAGTGCCA
GCCCGTTCTCATAGACGAGTTGATGTTAGCCCACTTAGAGACGCGCTTAA
AGATCTGAAAATTTTAGCCAAAGACCTGACCGTCTGAGACAATAATTTAC
CTGGAGAAAGATCGGTCAGACCTTTTTTGTGATTATATATTACTATTGAG
ATAAAAATGAGCTGTACTTTTAACAGTCGAAAGAacacatattttttgtt
ttccttttgtttACTGGAAGTCAAATCTGGACCTCCCAGACGCTGCAGGC
TTTGATAACCAGCATATCACTACGACTATGATTGATAAATGTGTTACAAT
GTAGAATTGACGTCCTAAgaataacaaaaaatttttttttaaagattacc
tCATCACCCAACGTGAGTTGTCTTTGTTAGCGAATTCCAAATTACACCTG
GTGCCGTAAGAACCACCACGGAACGATTGTAAAAAGTTAGAATCGGAGAC
AGGTGTACCGCATTCGTACCATAATACTTTGCCTTTGACTTGAGGAACCT
ATTGTCGTGTAAACAGATATGAAATGATataaaacaagtaatactttaat
ggacctacctatttataaaacgaataattagaatttaatggaagtaatgt
ataattttaaatttcgatttatatatctattgga Run BLAST on NCBI protein sequence of TCONS_00057233-protein >TCONS_00057233-protein ID=TCONS_00057233-protein|Name=TCONS_00057233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
VKISMKEVSQEQDMVSYEGPFSKPWQDSDTVLIVEEKDLHVHSNILSIAS
PYFEKMFNGNFKESQTKRVTLEGKSFELIEQMLKIIYPNVDAEFEFNTKL
CDGCYPEANNKRIQPCEDCTLAEGLNSLCAKCVVPGTELCPKCKNYFFKS
EEGRSQHFECLRNLSKLRDEYIISSLERIVDAEVLSMSKSLDGYTIEYTM
ELLELADHLQHQESADLCIQNLTSRLSSYGTCTDDGGNIRNVTFGKNISP
KSKNKLKGLIMKKRIDEVEKEIEQLEQNGDQSKTTTQKSGGFSFGQQQVP
ARSHRRVDVSPLRDALKDLKILAKDLTV Run BLAST on NCBI transcript from alignment at scaffold_286:114573..117891- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057233 ID=TCONS_00057233|Name=TCONS_00057233|organism=Clytia hemisphaerica|type=transcript|length=3319bp|location=Sequence derived from alignment at scaffold_286:114573..117891- (Clytia hemisphaerica)
GTAAAAATTTCTATGAAAGAAGTAAGTCAAGAACAAGATATGGTGTCTTA
CGAAGGGCCATTCTCAAAACCATGGCAGGACAGTGATACAGTTTTGATTG
TGGAAGAAAAAGACCTTCACGTTCATTCGAATATTTTATCCATCGCTTCC
CCTTACTTCGAAAAAATGTTCAATGGAAATTTCAAAGAATCGCAAACCAA
ACGAGTTACTTTGGAAGGGAAATCTTTTGAGCTGATTGAGCAAATGTTGA
AGATTATTTATCCAAATGTGGATGCAGAATTTGGTAATGAATTTACTTTG
ATTTAGTTGTGTTATTAAAAAGAAGAAAACAGTGGACTTTTTTTGCAAAA
ACAAACTAAAAAGGCTTTTATGGTCAAAATGTTAAGAACAAGTTGAGAAC
ATTTTAATCAACATCGAGTGTTGTTCTTAGGAGTTTACAGAAAATTGTAA
AAACAAGAACATTTTTAAAAGTATGTCTTTATATTAAGCTTAACACTCGA
AAAGTAACTCGGCTAGAACGCTTAAGGCATCAAAATGCAGGCGCCATAGC
ACCACTTAGAGAGCAGCTTTAAGACTAAAAAGGAGCCAGAAATTGTCCAC
GCCGACGGAAAAAATTCTTTTGACCTTCGACACTTCCAACGCCAATTCTT
CAAGGTTGTAAAGAAAATTTTACTTCATTGATACATTGCTGTGTTGCTTT
ACGAAGAAGGCCCAAGGTCAAACGCCTCTCCGCCTCGCGCCCGCGCTTAA
TAAAGCGTGGATCAAAATAGAACTATTGATTATACTAGATAAAATTACTT
CTTTATTATTTGCAATGTCAGAATTTAACACGAAGCTGTGTGATGGTTGT
TACCCAGAAGCGAACAACAAAAGGATACAACCATGTGAAGATTGCACATT
AGCTGAAGGTATAATAGTATTCTTTTTTTTTTTTATTCGCCCCATTACTA
CTGCCCGTTGGCTAGACGCAAAAACCTCCAAAATTTCAGTATAATAGAAA
GTCGTTATCAGAGCGCGGTGGTCCTTATTACCCATAATTCCTTCCGACCG
TGAAATGGCCCAAGCTAACAAATTTAGAAATTTGAAGTCATTCAGCAAAC
TTTATCCCAATTCTCTTGTGGCATTACAGTTAATGAGGCCCCCCTCCAAG
CAGTTTTCGTGATGACGTGATAGGGACTTTTTTGCAGCGTGATTACGGGA
TTTGGAAATTTTTTCTTCGTGATTGCGTGATGAGAGGTCAAAACGTGATC
GTGATTTGAAAGATTTTTGAGCCGTGATACGTGATTTAGACTATTTCAAA
TTGATGCGTGATTGTCCTTTTATTTTCTGATTTGCGTGATCGCGATTGAA
GACAAAAATTGCGATCAGAGTTACCGGTGGGGGAGGGGGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCGGTGGGGGGGGGGGTCGT
TCATACATCTATTTGAATGTTGTGTTGGAAACTTCTAGCATCTAATGGTA
TTTTTATCTCGATCCTCCGTCCAATATATTTGATTATTATTAATAGGATT
GAACTCGTTGTGTGCAAAATGTGTCGTCCCCGGAACAGAATTATGTCCAA
AATGCAAGAATTACTTTTTCAAATCAGGTATCAGAATTTGAATTCATTTT
ATCAGTTACATTTTAAGAGATACATATCCCAAGTGGCACACAACGATGAA
CGTCAGGGACCTTAGATGGACGCTGTAATGACGTTATGTGTCGGCTTGGA
CAGTATGTAAAACTTTCAGTTGAAAATTGAATCAAATAGTAGTATCATAG
AATTATTATCAATTCACTGGTATACTACCAATTCTCTCGTCGATTCAGTC
CAAGTATAACTCTCGAGTACTTAATAACCGTCTTCCCCGCTAATTTATTT
TTCGAAAATTTCCCACCCAGGACATTTTTACGTTCAGAATGATAAGCAGA
AAAACTATCATTTAAAAACACCACTAATTTCTTTAGAAGAGGGTCGATCA
CAACATTTCGAATGTTTGAGGAATCTGTCCAAATTACGTGATGAATACAT
TATTTCCTCATTGGAAAGGATCGTCGATGCCGAAGTTCTCTCTATGAGCA
AGTCTTTGGATGGGTATACAATCGAGTACACAATGGAACTATTAGAATTG
GCAGACCATCTGCAACATCAAGAATCGGCTGACCTCTGTATACAGAATTT
GACATCTCGATTAAGCAGCTATGGCACTTGTACCGATGATGGAGGAAACA
TAAGAAATGTGACTTTCGGGAAAAACATCAGTCCGAAATCAAAGAACAAA
TTGAAAGGTTTGATAATGAAAAAGAGAATCGACGAAGTAGAAAAAGAAAT
AGAACAGCTTGAGCAGAATGGCGATCAAAGCAAAACCACAACCCAAAAAT
CTGGCGGTTTTTCCTTTGGGCAGCAGCAAGTGCCAGCCCGTTCTCATAGA
CGAGTTGATGTTAGCCCACTTAGAGACGCGCTTAAAGATCTGAAAATTTT
AGCCAAAGACCTGACCGTCTGAGACAATAATTTACCTGGAGAAAGATCGG
TCAGACCTTTTTTGTGATTATATATTACTATTGAGATAAAAATGAGCTGT
ACTTTTAACAGTCGAAAGAACACATATTTTTTGTTTTCCTTTTGTTTACT
GGAAGTCAAATCTGGACCTCCCAGACGCTGCAGGCTTTGATAACCAGCAT
ATCACTACGACTATGATTGATAAATGTGTTACAATGTAGAATTGACGTCC
TAAGAATAACAAAAAATTTTTTTTTAAAGATTACCTCATCACCCAACGTG
AGTTGTCTTTGTTAGCGAATTCCAAATTACACCTGGTGCCGTAAGAACCA
CCACGGAACGATTGTAAAAAGTTAGAATCGGAGACAGGTGTACCGCATTC
GTACCATAATACTTTGCCTTTGACTTGAGGAACCTATTGTCGTGTAAACA
GATATGAAATGATATAAAACAAGTAATACTTTAATGGACCTACCTATTTA
TAAAACGAATAATTAGAATTTAATGGAAGTAATGTATAATTTTAAATTTC
GATTTATATATCTATTGGA Coding sequence (CDS) from alignment at scaffold_286:114573..117891- >TCONS_00057233 ID=TCONS_00057233|Name=TCONS_00057233|organism=Clytia hemisphaerica|type=CDS|length=3948bp|location=Sequence derived from alignment at scaffold_286:114573..117891- (Clytia hemisphaerica)
AAGAGGGTCGATCACAACATTTCGAATGTTTGAGGAATCTGTCCAAATTA
CGTGATGAATACATTATTTCCTCATTGGAAAGGATCGTCGATGCCGAAGT
TCTCTCTATGAGCAAGTCTTTGGATGGGTATACAATCGAGTACACAATGG
AACTATTAGAATTGGCAGACCATCTGCAACATCAAGAATCGGCTGACCTC
TGTATACAGAATTTGACATCTCGATTAAGCAGCTATGGCACTTGTACCGA
TGATGGAGGAAACATAAGAAATGTGACTTTCGGGAAAAACATCAGTCCGA
AATCAAAGAACAAATTGAAAGGTTTGATAATGAAAAAGAGAATCGACGAA
GTAGAAAAAGAAATAGAACAGCTTGAGCAGAATGGCGATCAAAGCAAAAC
CACAACCCAAAAATCTGGCGGTTTTTCCTTTGGGCAGCAGCAAGTGCCAG
CCCGTTCTCATAGACGAGTTGATGTTAGCCCACTTAGAGACGCGCTTAAA
GATCTGAAAATTTTAGCCAAAGACCTGACCGTCTGAGATTGAACTCGTTG
TGTGCAAAATGTGTCGTCCCCGGAACAGAATTATGTCCAAAATGCAAGAA
TTACTTTTTCAAATCAGAATTTAACACGAAGCTGTGTGATGGTTGTTACC
CAGAAGCGAACAACAAAAGGATACAACCATGTGAAGATTGCACATTAGCT
GAAGGTAAAAATTTCTATGAAAGAAGTAAGTCAAGAACAAGATATGGTGT
CTTACGAAGGGCCATTCTCAAAACCATGGCAGGACAGTGATACAGTTTTG
ATTGTGGAAGAAAAAGACCTTCACGTTCATTCGAATATTTTATCCATCGC
TTCCCCTTACTTCGAAAAAATGTTCAATGGAAATTTCAAAGAATCGCAAA
CCAAACGAGTTACTTTGGAAGGGAAATCTTTTGAGCTGATTGAGCAAATG
TTGAAGATTATTTATCCAAATGTGGATGCAGAATTTGAAGAGGGTCGATC
ACAACATTTCGAATGTTTGAGGAATCTGTCCAAATTACGTGATGAATACA
TTATTTCCTCATTGGAAAGGATCGTCGATGCCGAAGTTCTCTCTATGAGC
AAGTCTTTGGATGGGTATACAATCGAGTACACAATGGAACTATTAGAATT
GGCAGACCATCTGCAACATCAAGAATCGGCTGACCTCTGTATACAGAATT
TGACATCTCGATTAAGCAGCTATGGCACTTGTACCGATGATGGAGGAAAC
ATAAGAAATGTGACTTTCGGGAAAAACATCAGTCCGAAATCAAAGAACAA
ATTGAAAGGTTTGATAATGAAAAAGAGAATCGACGAAGTAGAAAAAGAAA
TAGAACAGCTTGAGCAGAATGGCGATCAAAGCAAAACCACAACCCAAAAA
TCTGGCGGTTTTTCCTTTGGGCAGCAGCAAGTGCCAGCCCGTTCTCATAG
ACGAGTTGATGTTAGCCCACTTAGAGACGCGCTTAAAGATCTGAAAATTT
TAGCCAAAGACCTGACCGTCTGAGATTGAACTCGTTGTGTGCAAAATGTG
TCGTCCCCGGAACAGAATTATGTCCAAAATGCAAGAATTACTTTTTCAAA
TCAGAATTTAACACGAAGCTGTGTGATGGTTGTTACCCAGAAGCGAACAA
CAAAAGGATACAACCATGTGAAGATTGCACATTAGCTGAAGGTAAAAATT
TCTATGAAAGAAGTAAGTCAAGAACAAGATATGGTGTCTTACGAAGGGCC
ATTCTCAAAACCATGGCAGGACAGTGATACAGTTTTGATTGTGGAAGAAA
AAGACCTTCACGTTCATTCGAATATTTTATCCATCGCTTCCCCTTACTTC
GAAAAAATGTTCAATGGAAATTTCAAAGAATCGCAAACCAAACGAGTTAC
TTTGGAAGGGAAATCTTTTGAGCTGATTGAGCAAATGTTGAAGATTATTT
ATCCAAATGTGGATGCAGAATTTGAAGAGGGTCGATCACAACATTTCGAA
TGTTTGAGGAATCTGTCCAAATTACGTGATGAATACATTATTTCCTCATT
GGAAAGGATCGTCGATGCCGAAGTTCTCTCTATGAGCAAGTCTTTGGATG
GGTATACAATCGAGTACACAATGGAACTATTAGAATTGGCAGACCATCTG
CAACATCAAGAATCGGCTGACCTCTGTATACAGAATTTGACATCTCGATT
AAGCAGCTATGGCACTTGTACCGATGATGGAGGAAACATAAGAAATGTGA
CTTTCGGGAAAAACATCAGTCCGAAATCAAAGAACAAATTGAAAGGTTTG
ATAATGAAAAAGAGAATCGACGAAGTAGAAAAAGAAATAGAACAGCTTGA
GCAGAATGGCGATCAAAGCAAAACCACAACCCAAAAATCTGGCGGTTTTT
CCTTTGGGCAGCAGCAAGTGCCAGCCCGTTCTCATAGACGAGTTGATGTT
AGCCCACTTAGAGACGCGCTTAAAGATCTGAAAATTTTAGCCAAAGACCT
GACCGTCTGAGATTGAACTCGTTGTGTGCAAAATGTGTCGTCCCCGGAAC
AGAATTATGTCCAAAATGCAAGAATTACTTTTTCAAATCAGAATTTAACA
CGAAGCTGTGTGATGGTTGTTACCCAGAAGCGAACAACAAAAGGATACAA
CCATGTGAAGATTGCACATTAGCTGAAGGTAAAAATTTCTATGAAAGAAG
TAAGTCAAGAACAAGATATGGTGTCTTACGAAGGGCCATTCTCAAAACCA
TGGCAGGACAGTGATACAGTTTTGATTGTGGAAGAAAAAGACCTTCACGT
TCATTCGAATATTTTATCCATCGCTTCCCCTTACTTCGAAAAAATGTTCA
ATGGAAATTTCAAAGAATCGCAAACCAAACGAGTTACTTTGGAAGGGAAA
TCTTTTGAGCTGATTGAGCAAATGTTGAAGATTATTTATCCAAATGTGGA
TGCAGAATTTGAAGAGGGTCGATCACAACATTTCGAATGTTTGAGGAATC
TGTCCAAATTACGTGATGAATACATTATTTCCTCATTGGAAAGGATCGTC
GATGCCGAAGTTCTCTCTATGAGCAAGTCTTTGGATGGGTATACAATCGA
GTACACAATGGAACTATTAGAATTGGCAGACCATCTGCAACATCAAGAAT
CGGCTGACCTCTGTATACAGAATTTGACATCTCGATTAAGCAGCTATGGC
ACTTGTACCGATGATGGAGGAAACATAAGAAATGTGACTTTCGGGAAAAA
CATCAGTCCGAAATCAAAGAACAAATTGAAAGGTTTGATAATGAAAAAGA
GAATCGACGAAGTAGAAAAAGAAATAGAACAGCTTGAGCAGAATGGCGAT
CAAAGCAAAACCACAACCCAAAAATCTGGCGGTTTTTCCTTTGGGCAGCA
GCAAGTGCCAGCCCGTTCTCATAGACGAGTTGATGTTAGCCCACTTAGAG
ACGCGCTTAAAGATCTGAAAATTTTAGCCAAAGACCTGACCGTCTGAGAT
TGAACTCGTTGTGTGCAAAATGTGTCGTCCCCGGAACAGAATTATGTCCA
AAATGCAAGAATTACTTTTTCAAATCAGAATTTAACACGAAGCTGTGTGA
TGGTTGTTACCCAGAAGCGAACAACAAAAGGATACAACCATGTGAAGATT
GCACATTAGCTGAAGGTAAAAATTTCTATGAAAGAAGTAAGTCAAGAACA
AGATATGGTGTCTTACGAAGGGCCATTCTCAAAACCATGGCAGGACAGTG
ATACAGTTTTGATTGTGGAAGAAAAAGACCTTCACGTTCATTCGAATATT
TTATCCATCGCTTCCCCTTACTTCGAAAAAATGTTCAATGGAAATTTCAA
AGAATCGCAAACCAAACGAGTTACTTTGGAAGGGAAATCTTTTGAGCTGA
TTGAGCAAATGTTGAAGATTATTTATCCAAATGTGGATGCAGAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057233-exon-scaffold_286-1575043694:117609..117891 | TCONS_00057233-exon-scaffold_286-1575043694:117609..117891 | Clytia hemisphaerica | exon |
| TCONS_00057233-exon-scaffold_286-1575043694:116984..117070 | TCONS_00057233-exon-scaffold_286-1575043694:116984..117070 | Clytia hemisphaerica | exon |
| TCONS_00057233-exon-scaffold_286-1575043694:116015..116095 | TCONS_00057233-exon-scaffold_286-1575043694:116015..116095 | Clytia hemisphaerica | exon |
| TCONS_00057233-exon-scaffold_286-1575043694:114573..115655 | TCONS_00057233-exon-scaffold_286-1575043694:114573..115655 | Clytia hemisphaerica | exon |
| TCONS_00057233-exon-scaffold_286-1510915933:117609..117891 | TCONS_00057233-exon-scaffold_286-1510915933:117609..117891 | Clytia hemisphaerica | exon |
| TCONS_00057233-exon-scaffold_286-1510915933:116984..117070 | TCONS_00057233-exon-scaffold_286-1510915933:116984..117070 | Clytia hemisphaerica | exon |
| TCONS_00057233-exon-scaffold_286-1510915933:116015..116095 | TCONS_00057233-exon-scaffold_286-1510915933:116015..116095 | Clytia hemisphaerica | exon |
| TCONS_00057233-exon-scaffold_286-1510915933:114573..115655 | TCONS_00057233-exon-scaffold_286-1510915933:114573..115655 | Clytia hemisphaerica | exon |
| TCONS_00057233-exon-scaffold_286-1491911889:117609..117891 | TCONS_00057233-exon-scaffold_286-1491911889:117609..117891 | Clytia hemisphaerica | exon |
| TCONS_00057233-exon-scaffold_286-1491911889:116984..117070 | TCONS_00057233-exon-scaffold_286-1491911889:116984..117070 | Clytia hemisphaerica | exon |
| TCONS_00057233-exon-scaffold_286-1491911889:116015..116095 | TCONS_00057233-exon-scaffold_286-1491911889:116015..116095 | Clytia hemisphaerica | exon |
| TCONS_00057233-exon-scaffold_286-1491911889:114573..115655 | TCONS_00057233-exon-scaffold_286-1491911889:114573..115655 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:114573..117891 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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