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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057239 ID=TCONS_00057239|Name=TCONS_00057239|organism=Clytia hemisphaerica|type=transcript|length=2333bpRun BLAST on NCBI transcript from alignment at scaffold_286:195666..228943- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057239 ID=TCONS_00057239|Name=TCONS_00057239|organism=Clytia hemisphaerica|type=transcript|length=33278bp|location=Sequence derived from alignment at scaffold_286:195666..228943- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057239 vs. Swiss-Prot (Human)
Match: MET16 (U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase OS=Homo sapiens GN=METTL16 PE=1 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 6.791e-64 Identity = 103/285 (36.14%), Postives = 153/285 (53.68%), Query Frame = 3
Query: 321 GASCIYGLLGNKMNQWKFIATDVDETSCKYAQQNVEQNHMQHQITIQHKRENESFFESVLSQHPQSQTKLFHFTMCNPPFFAEVYDGHVTYNRTNHRPSLXXXXXXXXXXXXXXGGEVSFVERMIDESLRTKNAIRWYTTMLGKKSSMKPLIQRLKDAEITNYTTTEFSQGRTTRWGLAWSFSDNRXXXXXXXXXXXXXXXXXXFIMSFTRDFFVETEILNIKSTAKSTEIDAVVWDIVKVVEKELFDLQISLDAPEHIELMNSGAYELT--GKAFANTWIHSRQ 1169
GASCIY LLG +N W F+AT+VD+ YA++NVEQN++ I + K ++ L + + ++ F MCNPPFFA + +R RP +S +T +E EGGE+ FV+R+I +SL+ K +RWY+ MLGKK S+ PL + L+ + T TEF QGRT RW LAWSF D+ K K +K KP E L++K++ +E + + +EK L DL++ +H + + G E++ A N+WIH R+
Sbjct: 112 GASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV-KVPQKTLLMDALKEESEI---IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALAWSFYDDVTVPSPPSKRRKLEKPRKPITFVVLASVMKE---LSLKASPLRSETAEGIVVVTTWIEKILTDLKV-----QH-KRVPCGKEEVSLFLTAIENSWIHLRR 383 HSP 2 Score: 105.916 bits (263), Expect = 6.791e-64 Identity = 49/103 (47.57%), Postives = 75/103 (72.82%), Query Frame = 1
Query: 7 MHERNIFKNDKPNFEQLAQEYPEFTPYLHKGSSGKPYVNFKDPAALRALSVVLLKKFFDLNLEIPLDRLIPTIPLRLNYLHWIEDLLNLNETEECSDEVLGID 315
MH RN +K+ P+F LA +YP+F ++ +G+ +NFKDP A+RAL+ LL++ F L+++IPL+RLIPT+PLRLNY+HW+EDL+ ++++ S GID
Sbjct: 7 MHARNRYKDKPPDFAYLASKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDK-STLRRGID 108 The following BLAST results are available for this feature:
BLAST of TCONS_00057239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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