Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057244 ID=TCONS_00057244|Name=TCONS_00057244|organism=Clytia hemisphaerica|type=transcript|length=466bp aagataaaagataaaaaaacaagatGGTGGACGTAGCATATGACAACAAT GACAGGTGGAATATCCCTGATGATCGACAACTTGCTCTGCGTGGAAGGTT ACAGACAGGATGGTCAAGTTACCAACAAGACGTCTTTTCAGCGTCCAAGA AACATTCATTGACGACGGACGAACACAACATCTTGAAGAAGGTTTTAGAG AAGAAAGAACAAATACAAAAACAAGAACAAGCTAGGATAGGGAACTTGGT GAAGAAGTTGGATGATATGAGATCACAAGTTCTCGGTGATGGCACAACTA CATGTCTAATATGTGGCACCAAAGCTGGACTACTCAAAGATCAACTCAGA TACTGTTTCAAATGTAGTAAGATGGTGTGCCCAAAATGTAGCATCGAAAC GAAACTATCACTTGAGTATTCTGGCAAAGTGTATTCTTGTGTTTTATGTT TTGAGGAGCGGCAGGG Run BLAST on NCBI protein sequence of TCONS_00057244-protein >TCONS_00057244-protein ID=TCONS_00057244-protein|Name=TCONS_00057244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MVDVAYDNNDRWNIPDDRQLALRGRLQTGWSSYQQDVFSASKKHSLTTDE HNILKKVLEKKEQIQKQEQARIGNLVKKLDDMRSQVLGDGTTTCLICGTK AGLLKDQLRYCFKCSKMVCPKCSIETKLSLEYSGKVYSCVLCFEERQ Run BLAST on NCBI transcript from alignment at scaffold_286:304859..311555- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057244 ID=TCONS_00057244|Name=TCONS_00057244|organism=Clytia hemisphaerica|type=transcript|length=6697bp|location=Sequence derived from alignment at scaffold_286:304859..311555- (Clytia hemisphaerica) AAGATAAAAGATAAAAAAACAAGATGGTGGACGTAGCATATGACAACAAT
GACAGGTGGAATATCCCTGATGATCGACAACTTGCTCTGCGTGGAAGGTA
TGTCACCCAAAATCTTTTTCTTTTGTAATAAAAATAGCCAAAACAAAGAA
TGAAGGTTCAACCTATTTGCCAGATGTCGGTTTAAAATCGAATTTTCAAT
AAACTTAATAGAAAACCTCTGCCAAATAAGTCGAGACCTCTCTTGATTCT
AGTCGGAAAATGCCGACACCAGCAAAGAAATCGAAATGCTCGGCACAAAA
ATGGTTGAATTTTAGTTTTTTTATGGTAGGTCACTATTTTCTTTGCATTT
CATAGAAGCTTGACTACAAGTTATCTGGCACCCGATGTAGAAATTTTCTT
CCGACACGCTAAAGCTCTGAAGGTCGGGAAAATTTTCAACATTACATTAC
GGAATTTCGCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCAAAAACAAAATA
GAAATAACATTGTACACAAAAAAGCCTGAAAGAAGAGAAAAGTCATAATC
AGCATCTATAATAACACTAAAAGAAAAACTAAAGCTATAGTAAATGAATA
CAAACCCTCAATGAACACTTTTGTGAAGTTTAATAAAGATTTTATCCAAG
AAACTTCAGTTCTGGAACACTGAAGTCGGTTTGACGGTTGTCGGCCGGTG
GACAACAGTTATATTTGGAGGACGGTCTAAGATAGATAACAACATAAAAG
TTACTGATAAAAGCCTAAGCCCATAGGAACATACCTGCTTTAGTTTCTTT
GGTCTTTGAATGGTATAAAATTTGAGAAAGTGTAGAAAAATTCAGCCATC
AAAACAAACAAAAACAAAAGTTATGATTATCAACTTTTCTGTGGTAGAAA
CATATTTTTTGGGCTGGTGCACATACAGAAATTACACTGGATACTAAAAC
TAATATTCAGGGAGTGATAAGTACAGTTAAANNNNNNNNNNNNNNNNNNN
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TATTTCTCTCCGATGGTATATTGGCCCGCTCCTTTAGAGCTTTAGCGTGG
GCGGCCGCCAATACGCCATCGGAATATCAGATAAGACTACAAGTCAAACT
TTTTGTCTGAGGCGATTTTTTCACCTTCTAGCCGTCAATAGATTCTAATA
GGAGGGTATAGAAATCATCTCAGGCTAGTTTATGTTTACCTTTAATCTCT
GAATTAGGCCTGATGCACTGACCTTTACAAGTCCTGAACTAAACTATATC
TGCCATTTTGATCTGAGTTTTTTTTTTTTTTTTTGAAAAAAGTACCCGTA
AATTGGCCATTGAAGTGCTACATCATTACAAGAAGTATTCAAGGAAAAGT
AGATCTAGCACTCTATCGAGTAGTGCTACAATTAGGTTGCCACCTTCAAA
ATAATTCTGATCAAAGATTTTGGTTGGCCGGGATGGAGAAACTCCCTCCA
CTCTATATAAAGCTTATTTACCAAACTCCCAAATTTTGATTTAAGGATGA
ACACCAAAATTTAAACTAATTAATTTTTCTGTCTTAGTGATGAAAAATGT
GCTACCTCTCTTCTTACTCAATCCTTCTTTAGGTTACAGACAGGATGGTC
AAGTTACCAACAAGACGTCTTTTCAGCGTCCAAGAAACATTCATTGACGA
CGGACGAACACAACATCTTGAAGAAGGTTTTAGAGAAGAAAGAACAAATA
CAAAAACAAGAACAAGCTAGGATAGGGTAAGCGACGGGCCTTGATTTGTT
GTCCCTATAAGGAAAAAATAGATATACCCAAAGGTATTCGAGGCGGATCT
TCACGTAGGATTTGAAGCAACATGTATCCTTCGTGAGATTCCAGCCCTTT
GTTGCTGTACACAAACGCTGGATTGAAAATTACACCATTTACCGCCAGAT
TTTGAAAAAACGTGCCACACGAAAAAAACAAACAAAGAAAACGTTAGATT
GAATCCGTCGTCCGAAATATCGCGCAAATCTAAAGGCATTTCTTTCGCTG
CCAGGCAGGGTCTGTTTTCCTTAGATTACCCGTATCCCATAAAGGTGGCT
GGAGTCTCTACGCAATTATTGGTACCAAATATCTTGGCTGTTTTCCGAAA
TTTATGCATGGGCCTATGGGCGAACTTTTTAATAAAGCTACTAACAGGCC
TTTTAATAATTTTGAGTTCAACACCTGCCTCGTTATGAAACCATTGCCAA
GGTGATTGAATCCCTTGAGTCTTCAAGTGTTACTTTTTAAATAGAGTAAG
TTTCTGATGAACTCTTCTGCGAACCTGTTACTATAACAATAGTTTGAAAA
CGAGGTTCTTGTGACGTAATCTATGGAAAGGTCTGAAAGGTCTACACTCT
TTATTTTATAAGCATAACCTTTATAAGCATAGGAGGTATGCTTATAAAAA
AGCTGAAATGCAAAAAAAAAATCGTGAAGCTTTTCTAAAACGCTGATCTT
TTGAGGGTTAATTTAAAAGCTGTTTGAGCTTTATTAGACCAAAGATTTTC
ACTAAGCGTATTGAGTCTCGACCCGATTTTCCAGTATACTTATGAAAAAA
GAGTGTATTGTGTATTCATCTGAAATTCCGTAATCAACCTGACGGTCTTT
CAAGCTATTTTGTTGGATTAGGTTGACATTATAGGGCCCATGGGCGCCAA
GCGTATCAGTGAAGGGTTTAGGTTCTAACGCATTTTGGGTGCGAAGCGTA
TCAGTGAAAATGGGCGGAGAAGTGGGCGGGTTTCCTTTCGCTTATTCAAT
TCACCTTTAGGAACCAAGCGTATCAGTCGCTCTCACTGATACGCTTGGCG
CCCAATGGGCCCTGTATTGTCAACCTGGTCCATTTTATTGATTCTCCTAC
AGGAACTTGGTGAAGAAGTTGGATGATATGAGATCACAAGTTCTCGGTGA
TGGCACAACTACATGTCTAATATGTGGCACCAAAGCTGGACTACTCAAAG
ATCAACTCAGATACTGTTTCAAATGTAGTAAGGTATGTCGGGGAAACTAA
AGTTTAGTTGGCGAAATTTATTTTACCCAATTTGGGTATGGGTGCTAACA
ACATTTTCTTTTTCGGCTAAGGGACTAAATCTATTCCTAGTTTTTTTTTC
TGATAATGATTTTCACAAAAACAGAAGCAGTCTTAGTATAGAAATCATTT
TCATCTCTTCGTATTTTTACTGAGAGCACTCAGCCTAGGTCAAATATCCT
AAACTTAGTATCATTCTCATGATCAATAAGTATTACTTCCACGCACCGTG
GTTATATGGATTTTTAAGAAAATGATCCAACGCGCAGTGGGCAATCACTA
ACGAGTTTATGTATGTGTAGTTTGCTGCAACGGAGACAATTAACTTCAGA
TTTTCTAGATCCTGACTAAGGGCGACATTAAGTCAGCACCTTTACCGTCC
TCGATTTGGCGGGTCAAAACTGTAGGTTATTCCAAATCCCTCCAGTCAAT
CCGCTGTCCTCAAAAGTGCAAATACATAAACTCGCTATCATAAGATTTAC
GCTTAATATGTTGGTTGGACTTCCATTTTACTACCTGGCTTATTGATATC
ATTCCCAATTTGTAAGAGAAACATAAATGTCATGTCTTTTCTGATCTGAA
TTTACCGTTATTGTCCTGACCAACTACCATCCACGTTATGGTCATTTCGT
TTCGAAAGTCATTCCAAAGTAATTAAAAGTAGACCACACTGGACCTATTC
TTCTATGGCTAAGTTGTCTTTGTAGCCCCATTTTTATCGAAAGAAAGACA
ATTTTAAAGCGAGGAAGAAACTCATTAATACTAGTAATTATAATTAGAAA
CCACTTAAAATAATAGTAACGTTGTATTGGTTCCGTGTAAGAACCAGACG
AAAATTTTATGCAACTAGACCAGTGTTTTAAATTGTCCCCATGCATACCA
CAAGGAATTCTGTTTTTTTTTTCTTATTAGCGTTATTTTTTTGTCTCTGA
TGCAATAAGGGCCGGATTAAGGGATCAGAATTAAATTAGGGCCGGGCTAA
AAGCGAAAAAAATAGCTTTGCCGTAATAAGGACCAAAATTAGGGTTTGCG
TAAAAAGAGGCGATAAGGTATATAAATTTCGAATTATTTTGCTTTATTTT
AGATGGTGTGCCCAAAATGTAGCATCGAAACGAAACTATCACTTGAGTAT
TCTGGCAAAGTGTATTCTTGTGTTTTATGTTTTGAGGAGCGGCAGGG Coding sequence (CDS) from alignment at scaffold_286:304859..311555- >TCONS_00057244 ID=TCONS_00057244|Name=TCONS_00057244|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_286:304859..311555- (Clytia hemisphaerica) ATGGTGTGCCCAAAATGTAGCATCGAAACGAAACTATCACTTGAGTATTC TGGCAAAGTGTATTCTTGTGTTTTATGTTTTGAGGAGCGGCAGGAACTTG GTGAAGAAGTTGGATGATATGAGATCACAAGTTCTCGGTGATGGCACAAC TACATGTCTAATATGTGGCACCAAAGCTGGACTACTCAAAGATCAACTCA GATACTGTTTCAAATGTAGTAAGGTTACAGACAGGATGGTCAAGTTACCA ACAAGACGTCTTTTCAGCGTCCAAGAAACATTCATTGACGACGGACGAAC ACAACATCTTGAAGAAGGTTTTAGAGAAGAAAGAACAAATACAAAAACAA GAACAAGCTAGGATAGGATGGTGGACGTAGCATATGACAACAATGACAGG TGGAATATCCCTGATGATCGACAACTTGCTCTGCGTGGAAGATGGTGTGC CCAAAATGTAGCATCGAAACGAAACTATCACTTGAGTATTCTGGCAAAGT GTATTCTTGTGTTTTATGTTTTGAGGAGCGGCAGGAACTTGGTGAAGAAG TTGGATGATATGAGATCACAAGTTCTCGGTGATGGCACAACTACATGTCT AATATGTGGCACCAAAGCTGGACTACTCAAAGATCAACTCAGATACTGTT TCAAATGTAGTAAGGTTACAGACAGGATGGTCAAGTTACCAACAAGACGT CTTTTCAGCGTCCAAGAAACATTCATTGACGACGGACGAACACAACATCT TGAAGAAGGTTTTAGAGAAGAAAGAACAAATACAAAAACAAGAACAAGCT AGGATAGGATGGTGGACGTAGCATATGACAACAATGACAGGTGGAATATC CCTGATGATCGACAACTTGCTCTGCGTGGAAGATGGTGTGCCCAAAATGT AGCATCGAAACGAAACTATCACTTGAGTATTCTGGCAAAGTGTATTCTTG TGTTTTATGTTTTGAGGAGCGGCAGGAACTTGGTGAAGAAGTTGGATGAT ATGAGATCACAAGTTCTCGGTGATGGCACAACTACATGTCTAATATGTGG CACCAAAGCTGGACTACTCAAAGATCAACTCAGATACTGTTTCAAATGTA GTAAGGTTACAGACAGGATGGTCAAGTTACCAACAAGACGTCTTTTCAGC GTCCAAGAAACATTCATTGACGACGGACGAACACAACATCTTGAAGAAGG TTTTAGAGAAGAAAGAACAAATACAAAAACAAGAACAAGCTAGGATAGGA TGGTGGACGTAGCATATGACAACAATGACAGGTGGAATATCCCTGATGAT CGACAACTTGCTCTGCGTGGAAGATGGTGTGCCCAAAATGTAGCATCGAA ACGAAACTATCACTTGAGTATTCTGGCAAAGTGTATTCTTGTGTTTTATG TTTTGAGGAGCGGCAGGAACTTGGTGAAGAAGTTGGATGATATGAGATCA CAAGTTCTCGGTGATGGCACAACTACATGTCTAATATGTGGCACCAAAGC TGGACTACTCAAAGATCAACTCAGATACTGTTTCAAATGTAGTAAGGTTA CAGACAGGATGGTCAAGTTACCAACAAGACGTCTTTTCAGCGTCCAAGAA ACATTCATTGACGACGGACGAACACAACATCTTGAAGAAGGTTTTAGAGA AGAAAGAACAAATACAAAAACAAGAACAAGCTAGGATAGGATGGTGGACG TAGCATATGACAACAATGACAGGTGGAATATCCCTGATGATCGACAACTT GCTCTGCGTGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057244-exon-scaffold_286-1575043694:311459..311555 | TCONS_00057244-exon-scaffold_286-1575043694:311459..311555 | Clytia hemisphaerica | exon |
TCONS_00057244-exon-scaffold_286-1575043694:307330..307473 | TCONS_00057244-exon-scaffold_286-1575043694:307330..307473 | Clytia hemisphaerica | exon |
TCONS_00057244-exon-scaffold_286-1575043694:306074..306203 | TCONS_00057244-exon-scaffold_286-1575043694:306074..306203 | Clytia hemisphaerica | exon |
TCONS_00057244-exon-scaffold_286-1575043694:304859..304953 | TCONS_00057244-exon-scaffold_286-1575043694:304859..304953 | Clytia hemisphaerica | exon |
TCONS_00057244-exon-scaffold_286-1510915933:311459..311555 | TCONS_00057244-exon-scaffold_286-1510915933:311459..311555 | Clytia hemisphaerica | exon |
TCONS_00057244-exon-scaffold_286-1510915933:307330..307473 | TCONS_00057244-exon-scaffold_286-1510915933:307330..307473 | Clytia hemisphaerica | exon |
TCONS_00057244-exon-scaffold_286-1510915933:306074..306203 | TCONS_00057244-exon-scaffold_286-1510915933:306074..306203 | Clytia hemisphaerica | exon |
TCONS_00057244-exon-scaffold_286-1510915933:304859..304953 | TCONS_00057244-exon-scaffold_286-1510915933:304859..304953 | Clytia hemisphaerica | exon |
TCONS_00057244-exon-scaffold_286-1491911889:311459..311555 | TCONS_00057244-exon-scaffold_286-1491911889:311459..311555 | Clytia hemisphaerica | exon |
TCONS_00057244-exon-scaffold_286-1491911889:307330..307473 | TCONS_00057244-exon-scaffold_286-1491911889:307330..307473 | Clytia hemisphaerica | exon |
TCONS_00057244-exon-scaffold_286-1491911889:306074..306203 | TCONS_00057244-exon-scaffold_286-1491911889:306074..306203 | Clytia hemisphaerica | exon |
TCONS_00057244-exon-scaffold_286-1491911889:304859..304953 | TCONS_00057244-exon-scaffold_286-1491911889:304859..304953 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_286 | supercontig | scaffold_286:304859..311555 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00057244 vs. Swiss-Prot (Human)
Match: RPH3L (Rab effector Noc2 OS=Homo sapiens GN=RPH3AL PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 9.330e-24 Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 3 Query: 24 MVDVAY-DNNDRWNIPDDRQLALRGRLQTGWSSYQQDVFSASKKHSLTTDEHNXXXXXXXXXXXXXXXXXARIGNLVKKLDDMRSQVLGDGTTTCLICGTKAGLLKDQLRYCFKCSKMVCPKCSIETKLSLEYSGKVYSCVLCFEERQ 464
M D + ND+W P+DRQLALR +LQTGWS + +K L+ E + +V+++ E++ EQ RIG LV++L+ MR V+G+G + CL+CG G L +C C K VC KC IE S ++ C +C E+R+
Sbjct: 1 MADTIFGSGNDQWVCPNDRQLALRAKLQTGWSVHTYQTEKQRRKQHLSPAEVEAILQVIQRAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKKVCTKCGIEA--SPGQKRPLWLCKICSEQRE 146
The following BLAST results are available for this feature:
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