|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057248 ID=TCONS_00057248|Name=TCONS_00057248|organism=Clytia hemisphaerica|type=transcript|length=1936bpRun BLAST on NCBI protein sequence of TCONS_00057248-protein >TCONS_00057248-protein ID=TCONS_00057248-protein|Name=TCONS_00057248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=645bp RKVNKQDIFKKMMPKMACDYHVLDLIGEGSFGKVYKGRKKHTGQLVALKFRun BLAST on NCBI transcript from alignment at scaffold_286:360172..378595- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057248 ID=TCONS_00057248|Name=TCONS_00057248|organism=Clytia hemisphaerica|type=transcript|length=18424bp|location=Sequence derived from alignment at scaffold_286:360172..378595- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_286:360172..378595- >TCONS_00057248 ID=TCONS_00057248|Name=TCONS_00057248|organism=Clytia hemisphaerica|type=CDS|length=25155bp|location=Sequence derived from alignment at scaffold_286:360172..378595- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057248 vs. Swiss-Prot (Human)
Match: STK36 (Serine/threonine-protein kinase 36 OS=Homo sapiens GN=STK36 PE=1 SV=2) HSP 1 Score: 436.417 bits (1121), Expect = 6.199e-137 Identity = 196/264 (74.24%), Postives = 227/264 (85.98%), Query Frame = 2
Query: 59 YHVLDLIGEGSFGKVYKGRKKHTGQLVALKFIPKNNRSQKELKNLHREIEIMSKLKHKNIVSLLDSFETEREVCVVIEYAEGELFQILEDDLKIPEAQVQKIAAQLCEALYYLHSHRILHRDMKPQNILLTKTGDVKLCDFGFARAMSFQTLVLTSIKGTPLYMSPELVEEKPYDHTSDLWSLGCILYELYVGNPPFYTNSIFQLVSLIKKDPIKWPSDMNPVFRNFLEGLLTKDPTQRATWPKLLFHPFIRDFINVDSLEAGP 850
YHVL++IGEGSFG+VYKGR+K++ Q+VALKFIPK RS+KEL+NL REIEIM L+H NIV +LDSFET++EV VV +YAEGELFQILEDD K+PE QVQ IAAQL ALYYLHSHRILHRDMKPQNILL K G +KLCDFGFARAMS T+VLTSIKGTPLYMSPELVEE+PYDHT+DLWS+GCILYEL VG PPFY SIFQLVSLI KDP++WPS ++P F+NFL+GLLTKDP QR +WP LL+HPFI + + + AGP
Sbjct: 4 YHVLEMIGEGSFGRVYKGRRKYSAQVVALKFIPKLGRSEKELRNLQREIEIMRGLRHPNIVHMLDSFETDKEVVVVTDYAEGELFQILEDDGKLPEDQVQAIAAQLVSALYYLHSHRILHRDMKPQNILLAKGGGIKLCDFGFARAMSTNTMVLTSIKGTPLYMSPELVEERPYDHTADLWSVGCILYELAVGTPPFYATSIFQLVSLILKDPVRWPSTISPCFKNFLQGLLTKDPRQRLSWPDLLYHPFIAGHVTIITEPAGP 267 The following BLAST results are available for this feature:
BLAST of TCONS_00057248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.