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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057277 ID=TCONS_00057277|Name=TCONS_00057277|organism=Clytia hemisphaerica|type=transcript|length=1265bp
CATCTGTCTCATTTAGTCACTAAACCATTGACTACATCTGCCTCATTCAG
TCATTAATTTATGGTTTCTTTATTCATTGCTTTTGTTCTTTGACTTCTTG
TTTCCACTAATGACTTCCTTTTGACATCACCAAGTGATCTACACAAAAGC
ATCAGCATCTTTCCAAGAGTTTCCAAAGCTCCTTGAGAAAGATGGAgaag
atttgaaatttgagaaaaaatgccTTGTTAGAAATGTTGCAACTCATCTC
AGATAATGAGAAATGGATTCACAGGGATGTCTAATCATGTAAATCAGTGT
TTTTGACATTATTGGAAATACATTTCCTGATGAATAAAATCATATTTTGT
GTATGTTCATTACAACTAATTTTAGccttttttaaacattctttaaacta
acgttttagttttttggacataacttttgaaccaataaagtaaaattaaa
aagtaaaacACCAGAATTTAAGTTAGGTTTTCCTCTGATCGATTACAAAA
TCTTTTATCTGTTGCcaacaatatcaaatcaaagaggtcAACTTATTTCT
GGCACACTTGGTACAAAAGTTGGAAATTTGTTAtagtacatttttttgct
cagtttgaagagctctatacACTTTTCTGTGATTCAAACTTCTCAACAAA
CTCAGTTGAAAACACACTCGGTACCTTTTCTGACACTGCTCTTTATATTC
CCTTGCAAAACAATCTGTTTGACAAGCTCCAAAACTTATTGTTTTTCACC
CATTCAGCCCTTCTAATTTCTGTCAGCTTATATAaaagtggtatagtggt
tatcatcctCGACTTCCACCTGGGAGGCCCAAGTTCGATACTCCCTGtgt
ctctacgattcacttggcaagtgaatataccttcgcccgggtcaacccat
gtcatgcgaggggaattgggtaccattactctgataaaagagtgtgggta
gattagacagacattgtgacgtgccgtgTCACTCATAAAGTTTGGCCTAg
cgtgagcatcgctctcccagtgtTGTTCGAGTGTCAcggtatacgccatg
gcttggcagctcgcgCCAGTGTCTGTCAGCACTATGATTTctactccttc
gtgggtagtacccatcccgaatgcattTGGAGtggagggctcatatctat
ctatATAAAAGTGAGCTAAAAATCATTTCTATTTGCCATCATCAAGCAGC
TTtaatcaggattagaaacttgTCTTGCCTCTTTTATTTTGTCCTTTAaa
acaatacaatacaat Run BLAST on NCBI protein sequence of TCONS_00057277-protein >TCONS_00057277-protein ID=TCONS_00057277-protein|Name=TCONS_00057277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MGTTHEGVEIIVLTDTGASCQAMAYTVTLEQHWESDAHARPNFMSDTARH
NVCLIYPHSFIRVMVPNSPRMTWVDPGEGIFTCQVNRRDTGSIELGPPRW
KSRMITTIPLLYKLTEIRRAEWVKNNKFWSLSNRLFCKGI Run BLAST on NCBI transcript from alignment at scaffold_286:83909..85173 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057277 ID=TCONS_00057277|Name=TCONS_00057277|organism=Clytia hemisphaerica|type=transcript|length=1265bp|location=Sequence derived from alignment at scaffold_286:83909..85173 (Clytia hemisphaerica)
attgtattgtattgtttTAAAGGACAAAATAAAAGAGGCAAGAcaagttt
ctaatcctgattaAAGCTGCTTGATGATGGCAAATAGAAATGATTTTTAG
CTCACTTTTATatagatagatatgagccctccaCTCCAaatgcattcggg
atgggtactacccacgaaggagtagAAATCATAGTGCTGACAGACACTGG
cgcgagctgccaagccatggcgtataccgTGACACTCGAACAacactggg
agagcgatgctcacgcTAGGCCAAACTTTATGAGTGAcacggcacgtcac
aatgtctgtctaatctacccacactcttttatcagagtaatggtacccaa
ttcccctcgcatgacatgggttgacccgggcgaaggtatattcacttgcc
aagtgaatcgtagagacaCAGGGAGTATCGAACTTGGGCCTCCCAGGTGG
AAGTCGaggatgataaccactataccactttTATATAAGCTGACAGAAAT
TAGAAGGGCTGAATGGGTGAAAAACAATAAGTTTTGGAGCTTGTCAAACA
GATTGTTTTGCAAGGGAATATAAAGAGCAGTGTCAGAAAAGGTACCGAGT
GTGTTTTCAACTGAGTTTGTTGAGAAGTTTGAATCACAGAAAAGTgtata
gagctcttcaaactgagcaaaaaaatgtactaTAACAAATTTCCAACTTT
TGTACCAAGTGTGCCAGAAATAAGTTgacctctttgatttgatattgttg
GCAACAGATAAAAGATTTTGTAATCGATCAGAGGAAAACCTAACTTAAAT
TCTGGTgttttactttttaattttactttattggttcaaaagttatgtcc
aaaaaactaaaacgttagtttaaagaatgtttaaaaaaggCTAAAATTAG
TTGTAATGAACATACACAAAATATGATTTTATTCATCAGGAAATGTATTT
CCAATAATGTCAAAAACACTGATTTACATGATTAGACATCCCTGTGAATC
CATTTCTCATTATCTGAGATGAGTTGCAACATTTCTAACAAggcattttt
tctcaaatttcaaatcttcTCCATCTTTCTCAAGGAGCTTTGGAAACTCT
TGGAAAGATGCTGATGCTTTTGTGTAGATCACTTGGTGATGTCAAAAGGA
AGTCATTAGTGGAAACAAGAAGTCAAAGAACAAAAGCAATGAATAAAGAA
ACCATAAATTAATGACTGAATGAGGCAGATGTAGTCAATGGTTTAGTGAC
TAAATGAGACAGATG Coding sequence (CDS) from alignment at scaffold_286:83909..85173 >TCONS_00057277 ID=TCONS_00057277|Name=TCONS_00057277|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_286:83909..85173 (Clytia hemisphaerica)
atgggtactacccacgaaggagtagAAATCATAGTGCTGACAGACACTGG
cgcgagctgccaagccatggcgtataccgTGACACTCGAACAacactggg
agagcgatgctcacgcTAGGCCAAACTTTATGAGTGAcacggcacgtcac
aatgtctgtctaatctacccacactcttttatcagagtaatggtacccaa
ttcccctcgcatgacatgggttgacccgggcgaaggtatattcacttgcc
aagtgaatcgtagagacaCAGGGAGTATCGAACTTGGGCCTCCCAGGTGG
AAGTCGaggatgataaccactataccactttTATATAAGCTGACAGAAAT
TAGAAGGGCTGAATGGGTGAAAAACAATAAGTTTTGGAGCTTGTCAAACA
GATTGTTTTGCAAGGGAATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057277-exon-scaffold_286-1491911889:83909..85173 | TCONS_00057277-exon-scaffold_286-1491911889:83909..85173 | Clytia hemisphaerica | exon |
| TCONS_00057277-exon-scaffold_286-1510915933:83909..85173 | TCONS_00057277-exon-scaffold_286-1510915933:83909..85173 | Clytia hemisphaerica | exon |
| TCONS_00057277-exon-scaffold_286-1575043694:83909..85173 | TCONS_00057277-exon-scaffold_286-1575043694:83909..85173 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:83909..85173 . |
Blast
The following BLAST results are available for this feature:
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