TCONS_00057282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057282
Unique NameTCONS_00057282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057282 ID=TCONS_00057282|Name=TCONS_00057282|organism=Clytia hemisphaerica|type=transcript|length=1573bp
aaaaacaatattaGAAATGGTGTTTTATTTTGAGTCCAAACTGATTGATC
CGCCTGTTTTGTTGTACATGGGACGTGATAAACACGAGAATGAAGAACTC
ATCAGATGGGGTTGGCCAGAAGACATTTGGTTCCATGTTGATCAAATGTC
ATCAGCCCACGTCTATTTACGGTTACCTCCTGGTATGACCATCGATACTA
TCCCACAAGAAGTCATCTTAGATTGCGCTCATCTAACCAAGGCTAATAGT
ATACAAGGGTGTAAATCAAACAATGTAAATATTGTTTACACACTTTGgga
gaatttaaaaaagactGGGGATATGGATGTGGGTCAAGTTGGATTTCATA
AAAATAAGGAAGTCCGAAACATAatgattgaaaagaaaataaatgaaatc
aCTAATCGattaaacaaaacaaagagaGAAGAAGAGCCTAATTTCCGTGC
TTTACGTGAAGAGAGAGATGCAATTGAACGCAGAAAAGATAAGAAGAAAT
TACAAGAACAAAAggttgagcagaaaaaacaagaacaatttaagagaGAA
CaggaagatttgaaaaattacaCGTCACTTATGACTGAAGATAATATGAG
TTCTAATATTGATAATCCAATTGATGAAGATGACTTCATGTAAAATCAAC
AATTTTGNAATATGAGTTCTAATATTGATAATCCAATTGATGAAGATGAC
TTCAtgtaaaataaacaattttgtaaaagaaaaataatggaaattaGAAG
TTTTACATCCAATATAGGAATATGGTATTTCCTAATCTTGTAATTATGAC
CATAATACTATAATCCATAATCCTAATATGTAAATCCCACActaaattct
tattttatttCTAAATGTCTGGTATTGATGAGAACGGTTTTAAAATCTTG
TTAatgtttcaaatttgaaaaaaaatgagttCTTTAAATTTTCTGTAGAA
ATGGGCATAATAAAACTCTTGAGTTGTAATTTTGAACAGTTTCAAAAATT
CAGTACTGGGTGTGTGACATTTTTGAAGGCTCACACAAAACTGTCTCATA
GTAACAGAGCACATTGTGCATAATGTCTATATTTTTGATATGATTAAGTT
AAGCTAGATATATCCCCTAAATAATGCATTATTCTTTACCTAAATTGACT
TACTCTATCTCAAGTTATACCCAGAAGTAAAATGTGACAAAAAATGACTT
ACTTTAAGGATGACATATTTCAGTTTCTTTACCCATAAAGTAAGTCATTT
ATTGGCATAATCAACACCAAAAGTTGTTCGTATTTAACTACTGGATGATA
TAGGAGGTATGACAACATGGATTTatgtttaaattattttcaacagTTGA
TTGTGACAGAGAGTGACATACTTTGAACATAACAGGGTAATTCATTTAGT
AAGTCATTTATTGTCACAAAGAATGACTTCATAAATATATTTTAGAAAAG
GTGATAAAATTTCCTATtacctgtcaaaatttcaaggcttGTAATTAATT
TGAGTAGATTTTATTcaactttaaagatttttgtccattttttgtgTTCT
AAAAaatgtcacacaatttttga
Run BLAST on NCBI

protein sequence of TCONS_00057282-protein

>TCONS_00057282-protein ID=TCONS_00057282-protein|Name=TCONS_00057282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
KTILEMVFYFESKLIDPPVLLYMGRDKHENEELIRWGWPEDIWFHVDQMS
SAHVYLRLPPGMTIDTIPQEVILDCAHLTKANSIQGCKSNNVNIVYTLWE
NLKKTGDMDVGQVGFHKNKEVRNIMIEKKINEITNRLNKTKREEEPNFRA
LREERDAIERRKDKKKLQEQKVEQKKQEQFKREQEDLKNYTSLMTEDNMS
SNIDNPIDEDDFM
Run BLAST on NCBI

transcript from alignment at scaffold_286:229070..230642

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057282 ID=TCONS_00057282|Name=TCONS_00057282|organism=Clytia hemisphaerica|type=transcript|length=1573bp|location=Sequence derived from alignment at scaffold_286:229070..230642 (Clytia hemisphaerica)
tcaaaaattgtgtgacattTTTTAGAAcacaaaaaatggacaaaaatctt taaagttgAATAAAATCTACTCAAATTAATTACaagccttgaaattttga caggtaATAGGAAATTTTATCACCTTTTCTAAAATATATTTATGAAGTCA TTCTTTGTGACAATAAATGACTTACTAAATGAATTACCCTGTTATGTTCA AAGTATGTCACTCTCTGTCACAATCAActgttgaaaataatttaaacatA AATCCATGTTGTCATACCTCCTATATCATCCAGTAGTTAAATACGAACAA CTTTTGGTGTTGATTATGCCAATAAATGACTTACTTTATGGGTAAAGAAA CTGAAATATGTCATCCTTAAAGTAAGTCATTTTTTGTCACATTTTACTTC TGGGTATAACTTGAGATAGAGTAAGTCAATTTAGGTAAAGAATAATGCAT TATTTAGGGGATATATCTAGCTTAACTTAATCATATCAAAAATATAGACA TTATGCACAATGTGCTCTGTTACTATGAGACAGTTTTGTGTGAGCCTTCA AAAATGTCACACACCCAGTACTGAATTTTTGAAACTGTTCAAAATTACAA CTCAAGAGTTTTATTATGCCCATTTCTACAGAAAATTTAAAGaactcatt ttttttcaaatttgaaacatTAACAAGATTTTAAAACCGTTCTCATCAAT ACCAGACATTTAGaaataaaataagaatttagTGTGGGATTTACATATTA GGATTATGGATTATAGTATTATGGTCATAATTACAAGATTAGGAAATACC ATATTCCTATATTGGATGTAAAACTTCtaatttccattatttttctttta caaaattgtttattttacaTGAAGTCATCTTCATCAATTGGATTATCAAT ATTAGAACTCATATTNCAAAATTGTTGATTTTACATGAAGTCATCTTCAT CAATTGGATTATCAATATTAGAACTCATATTATCTTCAGTCATAAGTGAC GtgtaatttttcaaatcttcctGTTCtctcttaaattgttcttgtttttt ctgctcaaccTTTTGTTCTTGTAATTTCTTCTTATCTTTTCTGCGTTCAA TTGCATCTCTCTCTTCACGTAAAGCACGGAAATTAGGCTCTTCTTCtctc tttgttttgtttaatCGATTAGtgatttcatttattttcttttcaatcat TATGTTTCGGACTTCCTTATTTTTATGAAATCCAACTTGACCCACATCCA TATCCCCagtcttttttaaattctccCAAAGTGTGTAAACAATATTTACA TTGTTTGATTTACACCCTTGTATACTATTAGCCTTGGTTAGATGAGCGCA ATCTAAGATGACTTCTTGTGGGATAGTATCGATGGTCATACCAGGAGGTA ACCGTAAATAGACGTGGGCTGATGACATTTGATCAACATGGAACCAAATG TCTTCTGGCCAACCCCATCTGATGAGTTCTTCATTCTCGTGTTTATCACG TCCCATGTACAACAAAACAGGCGGATCAATCAGTTTGGACTCAAAATAAA ACACCATTTCtaatattgttttt

Coding sequence (CDS) from alignment at scaffold_286:229070..230642

>TCONS_00057282 ID=TCONS_00057282|Name=TCONS_00057282|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_286:229070..230642 (Clytia hemisphaerica)
TTACATGAAGTCATCTTCATCAATTGGATTATCAATATTAGAACTCATAT
TATCTTCAGTCATAAGTGACGtgtaatttttcaaatcttcctGTTCtctc
ttaaattgttcttgttttttctgctcaaccTTTTGTTCTTGTAATTTCTT
CTTATCTTTTCTGCGTTCAATTGCATCTCTCTCTTCACGTAAAGCACGGA
AATTAGGCTCTTCTTCtctctttgttttgtttaatCGATTAGtgatttca
tttattttcttttcaatcatTATGTTTCGGACTTCCTTATTTTTATGAAA
TCCAACTTGACCCACATCCATATCCCCagtcttttttaaattctccCAAA
GTGTGTAAACAATATTTACATTGTTTGATTTACACCCTTGTATACTATTA
GCCTTGGTTAGATGAGCGCAATCTAAGATGACTTCTTGTGGGATAGTATC
GATGGTCATACCAGGAGGTAACCGTAAATAGACGTGGGCTGATGACATTT
GATCAACATGGAACCAAATGTCTTCTGGCCAACCCCATCTGATGAGTTCT
TCATTCTCGTGTTTATCACGTCCCATGTACAACAAAACAGGCGGATCAAT
CAGTTTGGACTCAAAATAAAACACCATTTCtaatattgtttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036087XLOC_036087Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057282-proteinTCONS_00057282-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057282-exon-scaffold_286-1491911889:229070..230642TCONS_00057282-exon-scaffold_286-1491911889:229070..230642Clytia hemisphaericaexon
TCONS_00057282-exon-scaffold_286-1510915933:229070..230642TCONS_00057282-exon-scaffold_286-1510915933:229070..230642Clytia hemisphaericaexon
TCONS_00057282-exon-scaffold_286-1575043694:229070..230642TCONS_00057282-exon-scaffold_286-1575043694:229070..230642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:229070..230642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (4.2516 tpm) - - (53.0799 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.0799 46.8072 23.2663 20.4172 45.3533 33.954 26.5514 28.7078 21.6916 16.4253 14.9941 11.1211 9.20279 7.70683 12.9232 11.7923 21.9196 16.5242 4.2516 6.45206 17.3476 16.3095 51.9703 45.2739 17.4816 18.4681 13.0724 9.341 23.2931 24.5836
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008532DUF814
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
200400600800100012001400Expect = 2.88e-70 / Id = 58.85SequenceCCD25
Match NameE-valueIdentityDescription
CCD252.877e-7058.85Coiled-coil domain-containing protein 25 OS=Homo s... [more]
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