TCONS_00057293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057293
Unique NameTCONS_00057293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057293 ID=TCONS_00057293|Name=TCONS_00057293|organism=Clytia hemisphaerica|type=transcript|length=343bp
CGGAAATACTCTTTagtatttttcctctttttacacAGTATGACGTGTAA
ACTCGGtgtgtaataaatcaaaatggtagcaaaGACGTTTTTGAGTGTGA
AAGCCCACTGAACGTAGATTTTATCGTCAATAGTTTTCTGGAAAAATTGT
ATAGGATACATGGTTAAGTTGAGCATGACTAAAGTGAAGCAGAGATATAC
TGTTGTCATGGCATCATTGTAAACACTTGGTAATTTTCTCGATCGAAAAG
CAGGAACGAAACACGCTATTTGTAAACAGATTTGAAATCCAATCTGAATG
TCTATGTGGATGCTCATGTCACATTGAAATCGTCGAATCAAAG
Run BLAST on NCBI

protein sequence of TCONS_00057293-protein

>TCONS_00057293-protein ID=TCONS_00057293-protein|Name=TCONS_00057293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
LIRRFQCDMSIHIDIQIGFQICLQIACFVPAFRSRKLPSVYNDAMTTVYL
CFTLVMLNLTMYPIQFFQKTIDDKIYVQWAFTLKNVFATILIYYTPSLHV
ILCKKRKNTKEYF
Run BLAST on NCBI

transcript from alignment at scaffold_286:375431..375773

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057293 ID=TCONS_00057293|Name=TCONS_00057293|organism=Clytia hemisphaerica|type=transcript|length=343bp|location=Sequence derived from alignment at scaffold_286:375431..375773 (Clytia hemisphaerica)
CTTTGATTCGACGATTTCAATGTGACATGAGCATCCACATAGACATTCAG
ATTGGATTTCAAATCTGTTTACAAATAGCGTGTTTCGTTCCTGCTTTTCG
ATCGAGAAAATTACCAAGTGTTTACAATGATGCCATGACAACAGTATATC
TCTGCTTCACTTTAGTCATGCTCAACTTAACCATGTATCCTATACAATTT
TTCCAGAAAACTATTGACGATAAAATCTACGTTCAGTGGGCTTTCACACT
CAAAAACGTCtttgctaccattttgatttattacacaCCGAGTTTACACG
TCATACTgtgtaaaaagaggaaaaatactAAAGAGTATTTCCG

Coding sequence (CDS) from alignment at scaffold_286:375431..375773

>TCONS_00057293 ID=TCONS_00057293|Name=TCONS_00057293|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_286:375431..375773 (Clytia hemisphaerica)
TTGATTCGACGATTTCAATGTGACATGAGCATCCACATAGACATTCAGAT
TGGATTTCAAATCTGTTTACAAATAGCGTGTTTCGTTCCTGCTTTTCGAT
CGAGAAAATTACCAAGTGTTTACAATGATGCCATGACAACAGTATATCTC
TGCTTCACTTTAGTCATGCTCAACTTAACCATGTATCCTATACAATTTTT
CCAGAAAACTATTGACGATAAAATCTACGTTCAGTGGGCTTTCACACTCA
AAAACGTCtttgctaccattttgatttattacacaCCGAGTTTACACGTC
ATACTgtgtaaaaagaggaaaaatactAAAGAGTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036098XLOC_036098Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057293-proteinTCONS_00057293-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057293-exon-scaffold_286-1491911889:375431..375773TCONS_00057293-exon-scaffold_286-1491911889:375431..375773Clytia hemisphaericaexon
TCONS_00057293-exon-scaffold_286-1510915933:375431..375773TCONS_00057293-exon-scaffold_286-1510915933:375431..375773Clytia hemisphaericaexon
TCONS_00057293-exon-scaffold_286-1575043694:375431..375773TCONS_00057293-exon-scaffold_286-1575043694:375431..375773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:375431..375773 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264758	0.516362	1.49886	2.05297	2.85633	1.41069	1.36155	1.912	0.446213	0.552707	0	0.352655	0.880411	0.914316	0	0	0	0	0.281444	1.76706	0	0.374579	0	0.275986	0	0	0	0.387442	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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