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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057318 ID=TCONS_00057318|Name=TCONS_00057318|organism=Clytia hemisphaerica|type=transcript|length=1558bp
AAATTAGTTGGTTAGTTCGTACTTATTAAAGTTAAGAATGGCTAGATTAA
TGAAAAGAGCTATTTTGAGGAATCTTCAAAGTGCAATCTATGGCCAGAAG
CAGCCTTTCAGCAGCACATCGTTTATTCTGGCGAAAAGTATTTCTAGAAT
CGAAGATGATAAAAGCACCAGGCTGTTAAAAGTGCAGTGGGAAAACGGGA
AAGAAAACCTATACCCACATCTGTTTTTGAGAGATCACTGCNGGAAAACG
GGAAAGAAAACCTATACCCATATCTCTTTTTGAGAGATCACTGCCAATGT
CCCGAATGTTTTCATCCGTTTACGAAATCCCGGAAACTGGATACAGTCGC
TGCTGTAGATTTAGGAATCAcaatcgatgacgtcacttatgAAGCAAGCG
ATGACGTTGTCGAGGTCACGTGGCCTGATGGACACCAAAGTCGATTCACA
GCAAAATGGCTGAAATCCCGATTTCTATCTCGAAAAGGAGAACAAATCAA
TGATCGGACTGGTTTAGATACAGTTCAACGAGTTTCTTGGACTTCAATAG
AAATCCGTGAAAATACTCCGTTTGTTGATTTTCATGAAATCGAAAGCGAT
GAAAAAGCTTTGAAGGGACACTTGGAAAATCTTTTAAGATATGGTTTGAG
TATTGTCAGAAATGCACCTTTGGAGTTATCAGTGTTACAAAAGATGGCAG
ATTTAATGTGTCTATCCATTGTGAGACACGTAAATTATGGACCAACTAAC
ACTGTTGAATCCAAACCATCACCTAGTAACTTGGCATACACAGGAAGTGC
GCTACCAATGCACACAGATCTTCCTTACTACGACTATCGACCAGGCGTTC
AACTTCTACATTGCATTCGCCAATCAAGTGGAGGTGAATCAGACGGTGCA
AGTCTTCTTGTGGACGGAATGAAAGTCGTTGAAGACCTCAAAGAAAATTC
TCCTGAAGATTATCATTTGCTGACAACGACAAATTTCAGATTCAATGACG
AGGGAACGGACTTCTACGGTGAATTTGATCTGCGATTTGAGAGACCTATT
ATTGAactCGACAAGAACGGAAAATTCGTCCACATAGCTTACAACAATCC
AGTCCGAGATTTTATCAACGCTCCGGCAGAAAATATACAGCGAATATATG
AAGCGTATTACAAACTTTCAGCCATGCTCCGAGACAAACACTACCAATTT
CAATATAAAATGGCGCCAGGGGATATGTTAGTATTCGATAATAATAGAGT
CTTGCACGGGAGAATGGCTTTTGATGCGACATCGTCAGATCGTAAGCTAC
ACGGCTCTTTTTTGGATTGGGACGATATTCGGTCAACGTGGAGAGTGCTA
CATAACCGATAAGGATAAACAAATTGATTTCCGGATTGGCAGTGTTGAAG
ATATATGAGGAAAAAATGATCATTCATTACATACCCATTACCGGACTATT
AAATTCAGGATATACTTATACTTGTCAACAGTATttctaagaaattttaa
aagtcttttgttcattggagtctctataactcgaacctctacaactcgaa
catctatt Run BLAST on NCBI transcript from alignment at scaffold_288:74140..77452+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057318 ID=TCONS_00057318|Name=TCONS_00057318|organism=Clytia hemisphaerica|type=transcript|length=3313bp|location=Sequence derived from alignment at scaffold_288:74140..77452+ (Clytia hemisphaerica)
AAATTAGTTGGTTAGTTCGTACTTATTAAAGTTAAGAATGGCTAGATTAA
TGAAAAGAGCTATTTTGAGGAATCTTCAAAGTGCAATCTATGGCCAGAAG
CAGCCTTTCAGCAGCACATCGTTTATTCTGGCGAAAAGTATTTCTAGAAT
CGAAGATGATAAAAGCACCAGGCTGTTAAAAGTGCAGTGGGAAAACGGGA
AAGAAAACCTATACCCACATCTGTTTTTGAGAGATCACTGCNGGAAAACG
GGAAAGAAAACCTATACCCATATCTCTTTTTGAGAGATCACTGCCAATGT
CCCGAATGTTTTCATCCGTTTACGAAATCCCGGAAACTGGATACAGTCGC
TGCTGTAGATTTAGGAATCAcaatcgatgacgtcacttatgAAGCAAGCG
ATGACGTTGTCGAGGTCACGTGGCCTGATGGACACCAAAGTCGATTCACA
GCAAAATGGCTGAAATCCCGATTTCTATCTCGAAAAGGAGAACAAATCAA
TGATCGGACTGGTTTAGATACAGTTCAACGAGTTTCTTGGACTTCAATAG
AAATCCGTGAAAATACTCCGTTTGTTGATTTTCATGAAATCGAAAGCGAT
GAAAAAGCTTTGAAGGGACACTTGGAAAATCTTTTAAGATATGGTTTGAG
TATTGTCAGAAATGCACCTTTGGAGTTATCAGTGTTACAAAAGATGGCAG
ATTTAATGTGTCTATCCATTGTGAGACACGTAAATTATGGGTAAGTAGAA
TTGGAATGGTTTTATCAATTATACAAAACGGCAAACTACTCACATACAAG
CAACATAAGCAATATACAGCGTGTAGATACCTGCAGTCCAATAGAATACT
TTATAAAAAGATAGACACCATGTttctttgaataaacgccccttctttTT
AACACCCCCTTAGAATAAACACCCCTCCGTAAAGGAAAAAACCCCGAAAT
AAACGCCCCTCGAACAAACGCTTCCCCCCCCCCTTACGAGGGGCGTTTAA
ACAAGTAGCTGTTAGGGAGAActaaatggagaaaaatttagataTATGTT
AGTAATTGTACTCTTTCATTATTCAAACTACTGATCTTGAACAAGGTTTC
CAATCACTCTATCAAATTAACCTTAGTTGAAGATTATTTAATCAATGCCC
TCTGCTTTTAAACGCCCCTTCGAGTAAACGCCCCttctaaaatccaaaaa
tatatataatataaaatagGTATAATAAACGCCGGgggtttattcgaagt
aatgcgATAGATGGATATAAAgaagtactttaatgggattaattttggtg
gggaccaaatttcgcggatttcacGGATTTAGCTGTCATCCGTGAAAATA
TGTCAAAGCTCAATAGCAAAATTTGATAACCATTTATCCAACAAATTATT
TCCATTAAAGTAAACGCTTTAAGGGTAAagctcttttattttgtttcaca
GACCAACTAACACTGTTGAATCCAAACCATCACCTAGTAACTTGGCATAC
ACAGGAAGTGCGCTACCAATGCACACAGATCTTCCTTACTACGACTATCG
ACCAGGCGTAAGTAACAAGAAAGAACATTTTCTACTAAATTCATTTATTT
CTGCAATATCCTCTCACAATATCCtctttttcgcccgaactttaaattgc
tgaaaacgaagaattaattaaaattcccaatatattttgaccgagattgt
cccttttgtctcaaatatcaTGACACATTGTAGGTTCAACTTCTACATTG
CATTCGCCAATCAAGTGGAGGTGAATCAGACGGTGCAAGTCTTCTTGTGG
ACGGAATGAAAGTCGTTGAAGACCTCAAAGAAAATTCTCCTGAAGATTAT
CATTTGCTGACAACGACAAATTTCAGATTCAATGACGAGGGAACGGACTT
CTACGGTGAATTTGATCTGCGATTTGAGAGACCTATTATTGAGTAAGCAt
ttattgttgatttttttcactTAACACATCAAAAATGAAACTTCACAGTC
GGTAGAAATTTTATAGTACTTTTCCGTTGAACATATTTTCTATATTACTT
AGAAGATCTGGTATAGGGTATTTAGGGTATACAAAGCAGGCACGCTTCAA
ATGGGTTTTCTTTCATCTAAAAATGCAGTGTATGAGAATGGTTGTAGAGA
CgttaaaaagttgagaacattttcacattcaaaaaacaagtttaatGTTA
CTGTGATCACTCCACGAAAGTCCGAATACCttaagagaaagaaattttgg
cgcgAAGAGATTTTGGCGAAGAAGCCCATTCGCAAAATTTCGGCGGAATT
TATTTTGACGactaaataaaatttctaaatttgacgataattaattttgg
cgaacgtTGAATATTTAAGCTTATAAAAAGGatgaaaaacaggttttttt
aaggagaaatagagactagtgtgaaagaaatttaaatttgacgataatta
attttagcgaacgTTGAATATTTAAGCTTATAAAAAGGatgaaaaacagg
tttttttaggagaaatagagactagtgtgaaagaaatttaaatttgacga
taattaattttagcgaacgTTGAATATTTAAGCTTATAAAAAGGatgaaa
aacaggtttttttaggagaaatagagactaGTGTGAAGGAAATTTAAATT
TGacaagaattaattttggcgaattgcATATAAATGtaaatttctttccg
ccaaaatttcttctcttaagttAAGTGCAGATTCTTTATATAAGAGCTCT
TCCgttttttttccggacacaccAATTTCACTCTgcaaacttttcaaatt
tctttttcagactCGACAAGAACGGAAAATTCGTCCACATAGCTTACAAC
AATCCAGTCCGAGATTTTATCAACGCTCCGGCAGAAAATATACAGCGAAT
ATATGAAGCGTATTACAAACTTTCAGCCATGCTCCGAGACAAACACTACC
AATTTCAATATAAAATGGCGCCAGGGGATATGTTAGTATTCGATAATAAT
AGAGTCTTGCACGGGAGAATGGCTTTTGATGCGACATCGTCAGATCGTAA
GCTACACGGCTCTTTTTTGGATTGGGACGATATTCGGTCAACGTGGAGAG
TGCTACATAACCGATAAGGATAAACAAATTGATTTCCGGATTGGCAGTGT
TGAAGATATATGAGGAAAAAATGATCATTCATTACATACCCATTACCGGA
CTATTAAATTCAGGATATACTTATACTTGTCAACAGTATttctaagaaat
tttaaaagtcttttgttcattggagtctctataactcgaacctctacaac
tcgaacatctatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057318-exon-scaffold_288-1491911889:74140..74879 | TCONS_00057318-exon-scaffold_288-1491911889:74140..74879 | Clytia hemisphaerica | exon |
| TCONS_00057318-exon-scaffold_288-1510915933:74140..74879 | TCONS_00057318-exon-scaffold_288-1510915933:74140..74879 | Clytia hemisphaerica | exon |
| TCONS_00057318-exon-scaffold_288-1575043694:74140..74879 | TCONS_00057318-exon-scaffold_288-1575043694:74140..74879 | Clytia hemisphaerica | exon |
| TCONS_00057318-exon-scaffold_288-1491911889:75591..75696 | TCONS_00057318-exon-scaffold_288-1491911889:75591..75696 | Clytia hemisphaerica | exon |
| TCONS_00057318-exon-scaffold_288-1510915933:75591..75696 | TCONS_00057318-exon-scaffold_288-1510915933:75591..75696 | Clytia hemisphaerica | exon |
| TCONS_00057318-exon-scaffold_288-1575043694:75591..75696 | TCONS_00057318-exon-scaffold_288-1575043694:75591..75696 | Clytia hemisphaerica | exon |
| TCONS_00057318-exon-scaffold_288-1491911889:75873..76081 | TCONS_00057318-exon-scaffold_288-1491911889:75873..76081 | Clytia hemisphaerica | exon |
| TCONS_00057318-exon-scaffold_288-1510915933:75873..76081 | TCONS_00057318-exon-scaffold_288-1510915933:75873..76081 | Clytia hemisphaerica | exon |
| TCONS_00057318-exon-scaffold_288-1575043694:75873..76081 | TCONS_00057318-exon-scaffold_288-1575043694:75873..76081 | Clytia hemisphaerica | exon |
| TCONS_00057318-exon-scaffold_288-1491911889:76950..77452 | TCONS_00057318-exon-scaffold_288-1491911889:76950..77452 | Clytia hemisphaerica | exon |
| TCONS_00057318-exon-scaffold_288-1510915933:76950..77452 | TCONS_00057318-exon-scaffold_288-1510915933:76950..77452 | Clytia hemisphaerica | exon |
| TCONS_00057318-exon-scaffold_288-1575043694:76950..77452 | TCONS_00057318-exon-scaffold_288-1575043694:76950..77452 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:74140..77452 + |
Blast
BLAST of TCONS_00057318 vs. Swiss-Prot (Human)
Match: BODG (Gamma-butyrobetaine dioxygenase OS=Homo sapiens GN=BBOX1 PE=1 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 3.562e-67 Identity = 142/375 (37.87%), Postives = 206/375 (54.93%), Query Frame = 1
Query: 253 KENLYPYLFLRDHCQCPECFHPFTKSRKLDTVAAVDLGITIDDVTYEASDDVVEVTWPDGHQSRFTAKWLKSRFLSRKGEQINDRTGLDTVQRVSWTSIEIRENTPFVDFHEI-ESDEKALKGHLENLLRYG---LSIVRNAPLELSVLQKMADLMCLSIVRHVNYGPTNTVESKPSPSNLAYTGSALPMHTDLPYYDYRPGVQLLHCIRQSSGGESDGASLLVDGMKVVEDLKENSPEDYHLLTTTNFRFNDEGTDFYGEFDLRFERPIIELDKNGKFVHIAYNNPVRDFI-NAPAENIQRIYEAYYKLSAMLRDKHYQFQYKMAPGDMLVFDNNRVLHGRMAFDA-TSSDRKLHGSFLDWDDIRSTWRVLHNR 1359
+E+LYP ++LRD+C C +C+ K+RKL V A+D+ I I + ++ V +TWPD H S F A WLK R S++ R L + W S P +DF ++ DE A K L L + G L+ + P E+S L K + L+ YG T V+ K +N+AYT L HTD P + PGVQLLHCI+Q+ G G S +VDG V + LK+N+P+ + +L++T F D G D Y +F ++ + IIELD G+ V I +NN RD I + P E +Q Y A + ++ K +F +KM PGD++ FDN R+LHGR +++A T R L G++ DWD + S R+L R
Sbjct: 25 EESLYPAVWLRDNCPCSDCYLDSAKARKL-LVEALDVNIGIKGLIFDRKK--VYITWPDEHYSEFQADWLKKRCFSKQARAKLQRE-LFFPECQYWGS---ELQLPTLDFEDVLRYDEHAYKW-LSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTF-----YGHTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTG---GDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDIGVD-YCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIFDVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWDVVMSRLRILRQR 382
The following BLAST results are available for this feature:
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