TCONS_00057327 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057327
Unique NameTCONS_00057327
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2140

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057327 ID=TCONS_00057327|Name=TCONS_00057327|organism=Clytia hemisphaerica|type=transcript|length=2140bp
ttgatgttttatattttattaaaagCCAGGGTTATTTTTTCAACTTCTCT
AAGGTTTAGTTTTTAGTTTATCATTCGCTGAAAGTAGTATTCGAAAATAT
CATTTATTTACCATGTCCTTTACCACCTTTACTTAATAGTGATTTACTTT
AAAGACAAAATATTTGTGTGTTAtggaattgaaaaatgaaaatgatgaag
AGGAAAGTTTGTTGTCACAACAAGACAACCATGATGGAGGGAATATCAAC
AAGATAAACACCGTTATCGAGAAACTGGGTATAGGTCGTTTCTCATACTG
GCTCATTTCGCGACTGTCGACCGTTTATTTCACGTATGGTGCCGAGATGA
CAATGCTCGGAATCATTGCTCCTTTCTTCAAATGTGAATGGAATTTGACT
GGATTTGAATTGGGTTTTATGACGTCTACAAATCTGATTGGCCAAGGAGT
GGGGTTTGTTTTTTGGGGATGGATGGGTGACAAATTTGGTCGAAAGCCAG
TGCTACTGACAAGTCTCTTCATTGCAATGCTGTTTAGTTTCCTGACTGTT
TTTTCGACCGGTTATTTGCTGTTTGCACTTTTCCGTGGAATTGTTGGTAT
TGGGATCGCTTCATTTCTCTTTCCCGCATGTTTGTTATCCGAATACTTAC
CCACCCGCATTCGTGGAATCGGAATTCTTGCAAGCATGATCAGTTACAGT
CTTGGCTCGATTTTTGTGGCTTGgatagcaaaaatatttttgcttcaaaa
taagTGGCGTCTTTTCTTTATTGTTGTAAGTGCACCGATTGTGATCGCCC
TCGCTGCCTCCATTACTTTACCAGAATCGATCCGATTCTTAGCgaataaa
tcaaaaattgataaacttCGAACGATTCTACAACACATTGCCAAAGCCCA
CCACAAGGAGTTATCAAACGAGGATATAGATAATATTCGCCCTTTGCAAG
GACAACAAACGGATGAAAACTTTCGGATGATCTTCCGAAAAGATCGATTG
CCAAAGCTGTTAGCAGTCATTGTCACATTGTCTGCATGTTTGTTGAATTT
TTATGGTTTTATTATCTGGAACACAGATCTCCAACAACGTTACTTCTCAC
CACCTCAAAATGAAACGTCAACAAAATGCCATAAACTCACTCCAGCTGAT
TACAATCAGAATATGATTGTTGCAGTTAGTGGACTCTTGGGGACCTCTTC
AAGTCTAATACTAGTAGATCTGATCGGCCGTAAAAAGCCAGTTATTATTA
GTCTGCTTGCTGTATCGCTATTGATTTTATCCTTGAACTTTCGAATGTCA
TTTATAACTTTTTCATCCATAATGTTTTTGGGCCGCGGAATCATCTCAAC
CGGTTTAGCAACAACCAACCTTATATTGAACGAAGTTTTCGAAACTTCAG
TCCGTGCAAAAGTAGGTGGATTTGCGCAGATGATTGGATGTTGCATCACA
GGGTTGGCTCCCTTCTTGATACAGTATGGATCACACTATAGTATGATGGC
TGTCACGGTTGGCATATCTGTGTTCTGTGTTATAGGGGCCGTCGCCTGTA
TGACTCTGAAAGAAACTAAAGGGCGGCCCTTAGATGAAAAAGAGTAGATT
TATTATTCATTTGTCAAGTATTGTGTATCTTTATTAAAGTTAgactgcac
gcatcccctctgatatgttttaaAATTGGGTTACTCTctgacgggaattt
tatacacgatacgcatcccctatatcaaaattaGTTCCGGAGATGCGCAC
AGCCTGAGTCAAAAGTTAAATCCAAATCTGAATCCACGATGCTTTAATTC
AATGAATAGTTGACATTTGGTGATAAAAATTCTCGTTTTTTTCTTCCAAC
AAATTTCCTTCTTTCTGCATCTGTAATACAAAGATGACTTGTTTTTCAAg
ccttttgttaaaatttttttttattctcatGTTGCTTATAAGTCATATTT
TGTTACTATCACCTGTAATTACCTGAGGGGAActtttgcgtttttttcgg
gTTCGGCCCTAAACTGCAACATTTAATTcgcgcaaaaattagttccctat
ATTACAAAGAAATTGATTATTTAGGTCAGATTATGAAACACCATTAAACC
AACCAGCGTTATTGCCCTTGCTCAGTTTCAGTTCCTCGCC
Run BLAST on NCBI

transcript from alignment at scaffold_288:257731..259953+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057327 ID=TCONS_00057327|Name=TCONS_00057327|organism=Clytia hemisphaerica|type=transcript|length=2223bp|location=Sequence derived from alignment at scaffold_288:257731..259953+ (Clytia hemisphaerica)
ttgatgttttatattttattaaaagCCAGGGTTATTTTTTCAACTTCTCT AAGGTTTAGTTTTTAGTTTATCATTCGCTGAAAGTAGTATTCGAAAATAT CATTTATTTACCATGTCCTTTACCACCTTTACTTAATAGTGATTTACTTT AAAGACAAAATATTTGTGTGTTAtggaattgaaaaatgaaaatgatgaag AGGAAAGTTTGTTGTCACAACAAGACAACCATGATGGAGGGAATATCAAC AAGATAAACACCGTTATCGAGAAACTGGGTATAGGTCGTTTCTCATACTG GCTCATTTCGCGACTGTCGACCGTTTATTTCACGTATGGTGCCGAGATGA CAATGCTCGGAATCATTGCTCCTTTCTTCAAATGTGAATGGAATTTGACT GGATTTGAATTGGGTTTTATGACGTCTACAAATCTGATTGGCCAAGGAGT GGGGTTTGTTTTTTGGGGATGGATGGGTGACAAATTTGGTCGAAAGCCAG TGCTACTGACAAGTCTCTTCATTGCAATGCTGTTTAGTTTCCTGACTGTT TTTTCGACCGGTTATTTGCTGTTTGCACTTTTCCGTGGAATTGTTGGTAT TGGGATCGCTTCATTTCTCTTTCCCGCATGTTTGTTATCCGAATACTTAC CCACCCGCATTCGTGGAATCGGAATTCTTGCAAGCATGATCAGTTACAGT CTTGGCTCGATTTTTGTGGCTTGgatagcaaaaatatttttgcttcaaaa taagTGGCGTCTTTTCTTTATTGTTGTAAGTGCACCGATTGTGATCGCCC TCGCTGCCTCCATTACTTTACCAGAATCGATCCGATTCTTAGCgaataaa tcaaaaattgataaacttCGAACGATTCTACAACACATTGCCAAAGCCCA CCACAAGGAGTTATCAAACGAGGATATAGATAATATTCGCCCTTTGCAAG GACAACAAACGGATGAAAACTTTCGGATGATCTTCCGAAAAGATCGATTG CCAAAGCTGTTAGCAGTCATTGTCACATTGTCTGCATGTTTGTTGAATTT TTATGGTTTTATTATCTGGAACACAGATCTCCAACAACGTTACTTCTCAT CACATCAAAATGAAACNCATGTTTGTTGAATTTTTATGGTTTTATTATCT GGAACACAGATCTCCAACAACGTTACTTCTCACCACCTCAAAATGAAACG TCAACAAAATGCCATAAACTCACTCCAGCTGATTACAATCAGAATATGAT TGTTGCAGTTAGTGGACTCTTGGGGACCTCTTCAAGTCTAATACTAGTAG ATCTGATCGGCCGTAAAAAGCCAGTTATTATTAGTCTGCTTGCTGTATCG CTATTGATTTTATCCTTGAACTTTCGAATGTCATTTATAACTTTTTCATC CATAATGTTTTTGGGCCGCGGAATCATCTCAACCGGTTTAGCAACAACCA ACCTTATATTGAACGAAGTTTTCGAAACTTCAGTCCGTGCAAAAGTAGGT GGATTTGCGCAGATGATTGGATGTTGCATCACAGGGTTGGCTCCCTTCTT GATACAGTATGGATCACACTATAGTATGATGGCTGTCACGGTTGGCATAT CTGTGTTCTGTGTTATAGGGGCCGTCGCCTGTATGACTCTGAAAGAAACT AAAGGGCGGCCCTTAGATGAAAAAGAGTAGATTTATTATTCATTTGTCAA GTATTGTGTATCTTTATTAAAGTTAgactgcacgcatcccctctgatatg ttttaaAATTGGGTTACTCTctgacgggaattttatacacgatacgcatc ccctatatcaaaattaGTTCCGGAGATGCGCACAGCCTGAGTCAAAAGTT AAATCCAAATCTGAATCCACGATGCTTTAATTCAATGAATAGTTGACATT TGGTGATAAAAATTCTCGTTTTTTTCTTCCAACAAATTTCCTTCTTTCTG CATCTGTAATACAAAGATGACTTGTTTTTCAAgccttttgttaaaatttt tttttattctcatGTTGCTTATAAGTCATATTTTGTTACTATCACCTGTA ATTACCTGAGGGGAActtttgcgtttttttcgggTTCGGCCCTAAACTGC AACATTTAATTcgcgcaaaaattagttccctatATTACAAAGAAATTGAT TATTTAGGTCAGATTATGAAACACCATTAAACCAACCAGCGTTATTGCCC TTGCTCAGTTTCAGTTCCTCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036125XLOC_036125Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057327-exon-scaffold_288-1491911889:257731..258765TCONS_00057327-exon-scaffold_288-1491911889:257731..258765Clytia hemisphaericaexon
TCONS_00057327-exon-scaffold_288-1510915933:257731..258765TCONS_00057327-exon-scaffold_288-1510915933:257731..258765Clytia hemisphaericaexon
TCONS_00057327-exon-scaffold_288-1575043694:257731..258765TCONS_00057327-exon-scaffold_288-1575043694:257731..258765Clytia hemisphaericaexon
TCONS_00057327-exon-scaffold_288-1491911889:258849..259953TCONS_00057327-exon-scaffold_288-1491911889:258849..259953Clytia hemisphaericaexon
TCONS_00057327-exon-scaffold_288-1510915933:258849..259953TCONS_00057327-exon-scaffold_288-1510915933:258849..259953Clytia hemisphaericaexon
TCONS_00057327-exon-scaffold_288-1575043694:258849..259953TCONS_00057327-exon-scaffold_288-1575043694:258849..259953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:257731..259953 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.191975 tpm) - - (5.20234 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.99993 3.06399 2.13386 2.4887 2.02886 2.64494 5.08156 5.20234 1.32361 1.69604 0.460609 1.11584 1.8429 4.54817 0.538602 0.403821 0.262482 1.59568 1.02105 0.798704 0.387086 0.704604 3.91825 2.54081 3.15395 2.51719 0.191975 0.26941 2.36315 2.28654
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Expect = 1.25e-34 / Id = 23.76SequenceSVOPL
Match NameE-valueIdentityDescription
SVOPL1.246e-3423.76Putative transporter SVOPL OS=Homo sapiens GN=SVOP... [more]
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