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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057336 ID=TCONS_00057336|Name=TCONS_00057336|organism=Clytia hemisphaerica|type=transcript|length=2162bp
gcaaaatgtaaacaaagctctactttcatttttatagacAAGTTTGTGGT
GGAAGTTCCATCTTATCAGCCTTTCTATTACTTTTAAAAAGTAATCTGTT
CTTCTGTTCTACTCGTTCAAAGTTGTTCATCTAGTTATTTATAATTTGCA
AGATGGAAGAAGTTTTCAAATCGTTTTGTTCTTTTGGAGCCGGAAAAGAT
GGAGCAGCTCTCATGGATAATTCCAAATTTGCAAAACTTGCACGAGATTT
AAAACTTTTGGACAAAAAGCTCACTGCAACAGATGTTGATATTATTTTCA
ATCGAACTGAAGTTAAACCtaaacGAACAAGAAAAATTCGATATGAACAG
TTCATGTTGGCATTGCAATACATGGCAAGCAGGAAATATCCAGGTGATGA
AGAAGGGTTCCAGAAACTCCAGCAAGTCATTTTGAAAGGTTGTGGACCAA
AAGAAGTCAAAACCACTAAATCAACCAACAAAGATGTCGTTGGCCGATTA
ACTGATACCACAAAATACACTGGATCTCATCGCGAACGTTTTGACGAAGA
TGGAACAGGTAAAGGATTGGGTGGACGGTACGCCACTGACGCCACAACTC
AAAACGCACTGTCTGGTTATGTTGGGGCGTATAAAGGAAAAGATACATAT
GATGAGGTGCATTgattgaatatttttcaagttacgTTTTTCACTTGTTG
CGCTGATTAATAGATTAGATTTGCGAGACGTTtatagaattatttttttc
atggtGATTTGGGATCCATAAAATCATCGTAAAGTTCACATAAAATATAC
GCTAGGcacaagaaaaacttttttgattaagAATTATTGGGCTTAAACGT
CATGTGAGACATTAACTCCTAGGATGAGATCAATTGGATCAGGTGTTTGA
CGGGTCAACCGGTCCTAAAGTTCTAACCCTAAAAAATGAATCAGGAGGTT
GGATGGAATTCGTTAGAATAAgctaacagatcatccattctgcgcatacC
AAACTCTGCTCTATATAGGGATATGTAATTAGATTGATCTTATCGAGTTG
ATTTTGaatgcacgcttttttataaaaatatactttataagaatatttat
gatgaaattagccaaaaaattaaaaatatcctaAGAATATCACTATCATG
GATTATTGGCAACGAAACCtgagaatgccatttttagagcacgTTACTGA
TAAATTGCCAATTGCCAGCAATACTAAAAAGTTTCACAAAAGTGCCAAAT
CTTTGCTCAAGGTGTATTACATGCTACATTTTGGCTAGGATTGGAtccaa
acctaagaataccgtaagaatatttcaagatgatttttcctcaaaaagtt
aagaatatttaagcGTGTAGAACAAAGGAagctatttttcatttattggg
TGAcggtcgaaattattttttacctatTGTATATAACAAATCCTAATTAT
TTAttggaaattatttttaaacagatatattttatcatattttatcaGAG
AAAGCGTTTGTATCAttgtcaaattaatttttttaattcgttcattcaat
atatttcattttcaaaaaaataaacatctttcttctaaaaatattacaat
agatttttaaattgaatcGTGCGTATTACGTCCAcaattttccataaatt
attaaaaatttacaattttgtttATGGAATAAATTATtactacaaaaaaa
taaagcataaaataaataattagCCGTCAGTAAAACAACTtgtttttaat
tgaaaaagtaaatttttcgaGCTTCAAATTAAACTGTTTTCGAAATTTCG
Ttctcaattttatcaaaatatttaggaattttcgacgaaaatattttcga
atcCAAGTTTTCTAGAAATATACCTATTTTCACAACATATAATTttctat
ttaaaaatatttttcttcgtcTTCGAGACATTCTTTTTCATGAAGTATGT
TTCAAACTACCAAAGTCTGTAATTATAATAATGTCGTTTGAGTACAAAAA
ATGTTCAGTTCATATAAAAAAGCGTTCTTTCCAAATGGGTCATTCATTCC
CTTCATCGATACAATTTCGATAGATTCTCGATTAGCTTCGATTGGTCAAG
TACCTTTTTCATTCGTCTTTCATACGTGTTTCGAACCACTCGTTTGCCGT
CACTTTCGTTTG Run BLAST on NCBI transcript from alignment at scaffold_288:593052..601090+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057336 ID=TCONS_00057336|Name=TCONS_00057336|organism=Clytia hemisphaerica|type=transcript|length=8039bp|location=Sequence derived from alignment at scaffold_288:593052..601090+ (Clytia hemisphaerica)
gcaaaatgtaaacaaagctctactttcatttttatagacAAGTTTGTGGT
GGAAGTTCCATCTTATCAGCCTTTCTATTACTTTTAAAAAGTAATCTGTT
CTTCTGTTCTACTCGTTCAAAGTTGTTCATCTAGTTATTTATAATTTGCA
AGATGGAAGAAGTTTTCAAATCGTTTTGTTCTTTTGGAGCCGGAAAAGAT
GGAGCAGCTCTCATGGATAATTCCAAATTTGCAAAACTTGCACGAGATTT
AAAACTTTTGGACAAAAAGCTCACTGCAACAGATGTTGATATTATTTTCA
ATCGAACTGAAGTTAAACCGTATGTATTTAGTATACTCTTTCTTACTCAA
TAATTGTTTTCTGCCAGTTGCCCAACAGAAACGTTTTTCCTTGGTTCTGT
CGTCATCTTTTTGTGGTTTTTCTACATCCAACTGCTGATGCATAAGCATA
AGGTTTACTGTATTCTAACATAACTAATCCTTTATTTTGGAAAGTTACTT
ATCACTCTACTAACCTATTTCAGAAAAACTGAGCGCAAAATAAACTTCAA
GCAATTCAAAGCTGCTGTCAAATTATTGGCCGAGAAGAAATATCCTGGAG
ATGCTGATGGTGCATCAAAACTTGAAGAACTGATTGCTGCAGGCAAACCA
ACTGCTAAGGGAGCAACTGTGAGTAAACATCATTTGTGAATGGCATTAAG
ATTAAATAATATATACAGTGAAGAATATAGTTGTTTGTGGGATGGGAGAA
TGTTATCAACAATATTACTATAGcataaattttgttaaaattataaCTAT
ACGTCTTTTACAACTGTTACCTACCGCCAGACGATCTCAAGCAAACAgaa
tcgacaatcgaaccagtctaaccaaatcgaacgcaatcgaccgattgaaa
ttcgattgtcgaatctcaatcgaacgtcaaaattatgGGTAATgatattc
gattggtttgattgttgttcgactggtttgatcgtcgattccgttcgatt
aagatcgtctggctttattcttgcagcttcccaacatccaagctttTGCG
Ttcaacaatagaatttcaatcggtcgattgcgttcgatatggttcgactg
gttcgatcatcgattccgttcgattgagatcgtctggctaccgtaagttg
gtctaatgttgacatccctcttctaatttcgacatccttctttaaagata
ggaatgataggaaggttggaatcgcggattgaaactaatttttttgctaa
gttatcagttgaggagtccatcagtgattccgacctttctatcattccta
tctttaaagaaggatgtcgaaattagaagagggatgtcgatattagacca
atttacggtaggcagttagtcacactaggaaattaagctttcagaaaaaa
acaacatcagtcatctacaggatgcattcatgatattcatgatgtaatct
tttcgttgattgacactctgaatcaaaacatttggccgccattattggtg
gcaaaacaAATGCGTTCCCCAATGTTTTCCAAGCAAGGACCCccggaaaa
aataagaaaagattaaTACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATACAAAATAGGTTAGCGGGACAATttttttgccaccaataatg
gcggcAAAGTTGTTACGTCACATCTATTGTTTAGGcgcaaagattacatc
atgaatttgcaacaacaaggatgagagtttacctgaatcaagtttgcaag
acaattaattaaaacttgaaagtttgaaacaaaataaaacgtgcagcagc
caaaatcaaccaaccaaaatttgtcattcaaatCTCGAAACAGTGCTTCG
ATTCTTAAGGCCTTGTTtgtacgctaaagtaaaaacaattccgaacatgt
aaatgggtcagtgtttgaggtccggcaaaatttccaggaaatagcctatc
tggcatagcgcggatctaggtgggttccgtctccccgtagatcttttttt
tgggaagttgatcttcaaattagttctcaaggttagcttggctcaaattt
tttaatctatggctcaaattttaggcaatttctcatagtttttaaaaata
ttaatttcattaaaaagcaccgggttattttttcatgaattcctttagaa
gttttgcggcacatttttttgcttgaaaatcaGGTAGACAacatagcgct
ttcgcagcattaatctttgatatgcattttggcgggacgctagtgtgact
aactgctagggacaagataatttatcttgTTTGTACTGGCCGAGGGAAAG
TGATGTATACTGGAATAATTTGTTATGCAAAAGACTGTTGTGTTCTCCTA
ACATATTTTGTAAACAATATATTATCCTGTGGCTTTATGTCAAATTCTGT
ATTGTCTTTCCTAGAAATTACACATAGGAATAGTATTATCTCAtcatatc
tttatttttcagaaagCAGTAAAAGGTGGAGCTGTTGATAGACTAACAGA
TACAAGCAAATACACTGGAAGTCACAAAGAACGCTTCGATGAATCAGGAA
AGGGCAAAGGCCTTGATGGGCGTAGAGAGATGGATAAGAAAGCATCTGAG
GGATATGTTGGCGGTTATCAAGGAATGGATACCTATGATAAATCTCACTG
ATTAAATGTAAAAGGAATGTAATATTCGTTTAGCAATGAACTAGCTCTTT
AGTTCTGCTTTTGAAGTagtcaaaattgtatttttttagatGCATTTTTT
TATCAGTTTTGGAGGTTATTCCCGAGGTGGTACTACCCTTGCCACTCACA
GGGGTGTGCTGCTGAAGTTTGAAAAATAGGaaccttttttttaaagtggc
cctgaatgggactgaaacttgcaaatgttctcaaaattttctacttttct
ccCAAAATCCCCCAAAAAGATATCCTAcaagggactgatttttctatttt
ggtgtttttgcgaccccaTCTGGGACTGATGGACTGttggtgaaaaaagg
taccctgaccagtggAACATTCCCGTACCCTATTATTGATATCTTTCCTT
TTTACAAGCTTCCCTTCTCTCTCTTTTAAATGTAGATTTtcctcatttca
atttttttatgcaaTAAAAGCCCCAAACAAATCGTTTCTTTATTACTATA
TATTTCTTGTTTGATTTTTAAACACAAAGAATGAATAAATAGCTTTGGAA
TCCATTTTTGACATTTAAAAGATTTCAGAATTATCTATTTTTATGAAATC
TAAGCTATCATCTGGCTTACAATACTAATATGTTGTTTCTATTGACTTTC
TTTATCAATGATTAATGACAGTTTAGCTTTACTATGAATGATAAAAATCG
TTTTATAATCTCTTCTCTTCGCTTTATTTATTCAGGGTCAGATTAGACCA
TATCTATTTGAAATAAAGACCTCCTCCACAGAGGCTCACTTCATGCTTGA
CATTCTAGCCCGGGTTAAAAAAATGCCGTCTATAATTCTAACATTCCAAT
ACTATTTTTTATTCTTACTTAATTTAGATATTACTAACTCTTTTAAAGTG
TGGATTTCtgttttttatctgaaaaatgttttaatataTTATTGTACACT
TATTGatggaatataattttagaatatttttgggTGTAATGTTCTCAGTC
ACTTGTAATTTTCATCATTAGATTTAGTTTTTATCACTAATTTTTATGca
gaataaaaaagatttttgcatcaaatttcatcgaatattttcCTAATCAA
GTACTGTCAAAGGTCTGGACAAAGTTCAAACGTTCATAATAGATATATCa
caccatagtcattataaaaaaacactggtctggcaatgtattgttttagc
tttattatcgaattttcttttgttataaataaaaggcaagttgcgatttg
catactttttgatcacgttaccaaattctccttttgggattggtctaaat
ttcaatcacatgatcaaaaagtatgcaaaataaatcgatttgcGAACACA
AGCTCTAACtgttaacaatagaaagaaacaatagccttccagaccggggt
tttttataatgactatgatcaCACTAATTACTACTGCTAATTACATATCA
ATTACTTAGTAAGAAATGCATTACATTTGGTTACACTAAAAGGAATTCTA
ACAACTTAgataattattttgataatagtttttatttgtttgttgaAATG
CAGAACCTCTCTGTAagggggttggtctaaaaagcagggtagccaatggg
gtcgccaattgggctaggttatggggtacctctttttgcctaaacttttg
aaatctgaaacctgtttaatgtggaaataactattacaacatcttgttaa
tgattccatgtgataacatttaagattcctttcgaacttcagtcacaata
gccttttttccaaaggtactgaactttgttacttctcaagagacctggcg
ccgtTTTGTCctccttcttggcttcgtttgaaaatttacagacccgaata
aataatatatacaaaacagtttttaatattttagatttagattttattta
tgtttttaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNtcaatcagattcatgctccctggtca
gtaaaatgtggttctatgcatccattttcggtatttctattctggtctgt
aaaatatttaggtaccccacaacccattggctaccccaattggctaccct
gctttttagaccaaccctctGTGAGGTTCTATGGAAATTATTTAAGATTC
TCGTAAAACAATAAAACTCTttaggatttttgaaaattatgaaaattatg
aaaattccaaaatattgatttttttcagtaaacGAACAAGAAAAATTCGA
TATGAACAGTTCATGTTGGCATTGCAATACATGGCAAGCAGGAAATATCC
AGGTGATGAAGAAGGGTTCCAGAAACTCCAGCAAGTCATTTTGAAAGGTT
GTGGACCAAAAGAAGTCAAAACCACTGTAGGGATATGATTTTTATGTTAT
TTCTAAACTGTGGGTAAAATAACGATTCATAATACCATAGACATATGAAC
TGTTCATATGTCTATGAATGATAATACTTTACTTTGGGAGCCATAAGTCA
AATGAGTGGGGATAATTGGAACATTGataaaaacttcaaattttatttaa
aaatgtacggaaaattaaaaatattcattttaaaatcaaaaatatattca
atgaAGTAGTTTTTTTAAGCCATTGGTATCGTTTTCATAGACAAAACTTC
AATCATGTTGTATGAATAAGAAAAATAGGCATCTCAGGAAGATCTTCGGT
GTAGCATGGAGACCAtataatgaatttttattttttcatcttagAAATCA
ACCAACAAAGATGTCGTTGGCCGATTAACTGATACCACAAAATACACTGG
ATCTCATCGCGAACGTTTTGACGAAGATGGAACAGGTAAAGGATTGGGTG
GACGGTACGCCACTGACGCCACAACTCAAAACGCACTGTCTGGTTATGTT
GGGGCGTATAAAGGAAAAGATACATATGATGAGGTGCATTgattgaatat
ttttcaagttacgTTTTTCACTTGTTGCGCTGATTAATAGATTAGATTTG
CGAGACGTTtatagaattatttttttcatggtGATTTGGGATCCATAAAA
TCATCGTAAAGTTCACATAAAATATACGCTAGGcacaagaaaaacttttt
tgattaagAATTATTGGGCTTAAACGTCATGTGAGACATTAACTCCTAGG
ATGAGATCAATTGGATCAGGTGTTTGACGGGTCAACCGGTCCTAAAGTTC
TAACCCTAAAAAATGAATCAGGAGGTTGGATGGAATTCGTTAGAATAAgc
taacagatcatccattctgcgcatacCAAACTCTGCTCTATATAGGGATA
TGTAATTAGATTGATCTTATCGAGTTGATTTTGaatgcacgcttttttat
aaaaatatactttataagaatatttatgatgaaattagccaaaaaattaa
aaatatcctaAGAATATCACTATCATGGATTATTGGCAACGAAACCtgag
aatgccatttttagagcacgTTACTGATAAATTGCCAATTGCCAGCAATA
CTAAAAAGTTTCACAAAAGTGCCAAATCTTTGCTCAAGGTGTATTACATG
CTACATTTTGGCTAGGATTGGAtccaaacctaagaataccgtaagaatat
ttcaagatgatttttcctcaaaaagttaagaatatttaagcGTGTAGAAC
AAAGGAagctatttttcatttattgggTGAcggtcgaaattattttttac
ctatTGTATATAACAAATCCTAATTATTTAttggaaattatttttaaaca
gatatattttatcatattttatcaGAGAAAGCGTTTGTATCAttgtcaaa
ttaatttttttaattcgttcattcaatatatttcattttcaaaaaaataa
acatctttcttctaaaaatattacaatagatttttaaattgaatcGTGCG
TATTACGTCCAcaattttccataaattattaaaaatttacaattttgttt
ATGGAATAAATTATtactacaaaaaaataaagcataaaataaataattag
CCGTCAGTAAAACAACTtgtttttaattgaaaaagtaaatttttcgaGCT
TCAAATTAAACTGTTTTCGAAATTTCGTtctcaattttatcaaaatattt
aggaattttcgacgaaaatattttcgaatcCAAGTTTTCTAGAAATATAC
CTATTTTCACAACATATAATTttctatttaaaaatatttttcttcgtcTT
CGAGACATTCTTTTTCATGAAGTATGTTTCAAACTACCAAAGTCTGTAAT
TATAATAATGTCGTTTGAGTACAAAAAATGTTCAGTTCATATAAAAAAGC
GTTCTTTCCAAATGGGTCATTCATTCCCTTCATCGATACAATTTCGATAG
ATTCTCGATTAGCTTCGATTGGTCAAGTACCTTTTTCATTCGTCTTTCAT
ACGTGTTTCGAACCACTCGTTTGCCGTCACTTTCGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057336-exon-scaffold_288-1491911889:593052..593370 | TCONS_00057336-exon-scaffold_288-1491911889:593052..593370 | Clytia hemisphaerica | exon |
| TCONS_00057336-exon-scaffold_288-1510915933:593052..593370 | TCONS_00057336-exon-scaffold_288-1510915933:593052..593370 | Clytia hemisphaerica | exon |
| TCONS_00057336-exon-scaffold_288-1575043694:593052..593370 | TCONS_00057336-exon-scaffold_288-1575043694:593052..593370 | Clytia hemisphaerica | exon |
| TCONS_00057336-exon-scaffold_288-1491911889:598880..599027 | TCONS_00057336-exon-scaffold_288-1491911889:598880..599027 | Clytia hemisphaerica | exon |
| TCONS_00057336-exon-scaffold_288-1510915933:598880..599027 | TCONS_00057336-exon-scaffold_288-1510915933:598880..599027 | Clytia hemisphaerica | exon |
| TCONS_00057336-exon-scaffold_288-1575043694:598880..599027 | TCONS_00057336-exon-scaffold_288-1575043694:598880..599027 | Clytia hemisphaerica | exon |
| TCONS_00057336-exon-scaffold_288-1491911889:599396..601090 | TCONS_00057336-exon-scaffold_288-1491911889:599396..601090 | Clytia hemisphaerica | exon |
| TCONS_00057336-exon-scaffold_288-1510915933:599396..601090 | TCONS_00057336-exon-scaffold_288-1510915933:599396..601090 | Clytia hemisphaerica | exon |
| TCONS_00057336-exon-scaffold_288-1575043694:599396..601090 | TCONS_00057336-exon-scaffold_288-1575043694:599396..601090 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:593052..601090 + |
Blast
BLAST of TCONS_00057336 vs. Swiss-Prot (Human)
Match: TPPP3 (Tubulin polymerization-promoting protein family member 3 OS=Homo sapiens GN=TPPP3 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.109e-23 Identity = 59/127 (46.46%), Postives = 78/127 (61.42%), Query Frame = 3
Query: 285 VDIIFNRTEVKPKRTRKIRYEQFMLALQYMASRKYPGD--EEGFQKLQQVILKGCGPKEVKTTKSTNKDVVGRLTDTTKYTGSHRERFDEDGTGKGLGGRYATDATTQNAL--SGYVGAYKGKDTYD 653
VDI+F++ VK K R I YE+F AL+ +A++++ G EE F + Q++ G P V TK+ V RLTDT++YTGSH+ERFDE G GKG+ GR Q+ L SGYV AYK TYD
Sbjct: 55 VDIVFSK--VKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVA-GKEPANVGVTKAKTGGAVDRLTDTSRYTGSHKERFDESGKGKGIAGR-------QDILDDSGYVSAYKNAGTYD 171
The following BLAST results are available for this feature:
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