TCONS_00057336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057336
Unique NameTCONS_00057336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2162

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057336 ID=TCONS_00057336|Name=TCONS_00057336|organism=Clytia hemisphaerica|type=transcript|length=2162bp
gcaaaatgtaaacaaagctctactttcatttttatagacAAGTTTGTGGT
GGAAGTTCCATCTTATCAGCCTTTCTATTACTTTTAAAAAGTAATCTGTT
CTTCTGTTCTACTCGTTCAAAGTTGTTCATCTAGTTATTTATAATTTGCA
AGATGGAAGAAGTTTTCAAATCGTTTTGTTCTTTTGGAGCCGGAAAAGAT
GGAGCAGCTCTCATGGATAATTCCAAATTTGCAAAACTTGCACGAGATTT
AAAACTTTTGGACAAAAAGCTCACTGCAACAGATGTTGATATTATTTTCA
ATCGAACTGAAGTTAAACCtaaacGAACAAGAAAAATTCGATATGAACAG
TTCATGTTGGCATTGCAATACATGGCAAGCAGGAAATATCCAGGTGATGA
AGAAGGGTTCCAGAAACTCCAGCAAGTCATTTTGAAAGGTTGTGGACCAA
AAGAAGTCAAAACCACTAAATCAACCAACAAAGATGTCGTTGGCCGATTA
ACTGATACCACAAAATACACTGGATCTCATCGCGAACGTTTTGACGAAGA
TGGAACAGGTAAAGGATTGGGTGGACGGTACGCCACTGACGCCACAACTC
AAAACGCACTGTCTGGTTATGTTGGGGCGTATAAAGGAAAAGATACATAT
GATGAGGTGCATTgattgaatatttttcaagttacgTTTTTCACTTGTTG
CGCTGATTAATAGATTAGATTTGCGAGACGTTtatagaattatttttttc
atggtGATTTGGGATCCATAAAATCATCGTAAAGTTCACATAAAATATAC
GCTAGGcacaagaaaaacttttttgattaagAATTATTGGGCTTAAACGT
CATGTGAGACATTAACTCCTAGGATGAGATCAATTGGATCAGGTGTTTGA
CGGGTCAACCGGTCCTAAAGTTCTAACCCTAAAAAATGAATCAGGAGGTT
GGATGGAATTCGTTAGAATAAgctaacagatcatccattctgcgcatacC
AAACTCTGCTCTATATAGGGATATGTAATTAGATTGATCTTATCGAGTTG
ATTTTGaatgcacgcttttttataaaaatatactttataagaatatttat
gatgaaattagccaaaaaattaaaaatatcctaAGAATATCACTATCATG
GATTATTGGCAACGAAACCtgagaatgccatttttagagcacgTTACTGA
TAAATTGCCAATTGCCAGCAATACTAAAAAGTTTCACAAAAGTGCCAAAT
CTTTGCTCAAGGTGTATTACATGCTACATTTTGGCTAGGATTGGAtccaa
acctaagaataccgtaagaatatttcaagatgatttttcctcaaaaagtt
aagaatatttaagcGTGTAGAACAAAGGAagctatttttcatttattggg
TGAcggtcgaaattattttttacctatTGTATATAACAAATCCTAATTAT
TTAttggaaattatttttaaacagatatattttatcatattttatcaGAG
AAAGCGTTTGTATCAttgtcaaattaatttttttaattcgttcattcaat
atatttcattttcaaaaaaataaacatctttcttctaaaaatattacaat
agatttttaaattgaatcGTGCGTATTACGTCCAcaattttccataaatt
attaaaaatttacaattttgtttATGGAATAAATTATtactacaaaaaaa
taaagcataaaataaataattagCCGTCAGTAAAACAACTtgtttttaat
tgaaaaagtaaatttttcgaGCTTCAAATTAAACTGTTTTCGAAATTTCG
Ttctcaattttatcaaaatatttaggaattttcgacgaaaatattttcga
atcCAAGTTTTCTAGAAATATACCTATTTTCACAACATATAATTttctat
ttaaaaatatttttcttcgtcTTCGAGACATTCTTTTTCATGAAGTATGT
TTCAAACTACCAAAGTCTGTAATTATAATAATGTCGTTTGAGTACAAAAA
ATGTTCAGTTCATATAAAAAAGCGTTCTTTCCAAATGGGTCATTCATTCC
CTTCATCGATACAATTTCGATAGATTCTCGATTAGCTTCGATTGGTCAAG
TACCTTTTTCATTCGTCTTTCATACGTGTTTCGAACCACTCGTTTGCCGT
CACTTTCGTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_288:593052..601090+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057336 ID=TCONS_00057336|Name=TCONS_00057336|organism=Clytia hemisphaerica|type=transcript|length=8039bp|location=Sequence derived from alignment at scaffold_288:593052..601090+ (Clytia hemisphaerica)
gcaaaatgtaaacaaagctctactttcatttttatagacAAGTTTGTGGT GGAAGTTCCATCTTATCAGCCTTTCTATTACTTTTAAAAAGTAATCTGTT CTTCTGTTCTACTCGTTCAAAGTTGTTCATCTAGTTATTTATAATTTGCA AGATGGAAGAAGTTTTCAAATCGTTTTGTTCTTTTGGAGCCGGAAAAGAT GGAGCAGCTCTCATGGATAATTCCAAATTTGCAAAACTTGCACGAGATTT AAAACTTTTGGACAAAAAGCTCACTGCAACAGATGTTGATATTATTTTCA ATCGAACTGAAGTTAAACCGTATGTATTTAGTATACTCTTTCTTACTCAA TAATTGTTTTCTGCCAGTTGCCCAACAGAAACGTTTTTCCTTGGTTCTGT CGTCATCTTTTTGTGGTTTTTCTACATCCAACTGCTGATGCATAAGCATA AGGTTTACTGTATTCTAACATAACTAATCCTTTATTTTGGAAAGTTACTT ATCACTCTACTAACCTATTTCAGAAAAACTGAGCGCAAAATAAACTTCAA GCAATTCAAAGCTGCTGTCAAATTATTGGCCGAGAAGAAATATCCTGGAG ATGCTGATGGTGCATCAAAACTTGAAGAACTGATTGCTGCAGGCAAACCA ACTGCTAAGGGAGCAACTGTGAGTAAACATCATTTGTGAATGGCATTAAG ATTAAATAATATATACAGTGAAGAATATAGTTGTTTGTGGGATGGGAGAA TGTTATCAACAATATTACTATAGcataaattttgttaaaattataaCTAT ACGTCTTTTACAACTGTTACCTACCGCCAGACGATCTCAAGCAAACAgaa tcgacaatcgaaccagtctaaccaaatcgaacgcaatcgaccgattgaaa ttcgattgtcgaatctcaatcgaacgtcaaaattatgGGTAATgatattc gattggtttgattgttgttcgactggtttgatcgtcgattccgttcgatt aagatcgtctggctttattcttgcagcttcccaacatccaagctttTGCG Ttcaacaatagaatttcaatcggtcgattgcgttcgatatggttcgactg gttcgatcatcgattccgttcgattgagatcgtctggctaccgtaagttg gtctaatgttgacatccctcttctaatttcgacatccttctttaaagata ggaatgataggaaggttggaatcgcggattgaaactaatttttttgctaa gttatcagttgaggagtccatcagtgattccgacctttctatcattccta tctttaaagaaggatgtcgaaattagaagagggatgtcgatattagacca atttacggtaggcagttagtcacactaggaaattaagctttcagaaaaaa acaacatcagtcatctacaggatgcattcatgatattcatgatgtaatct tttcgttgattgacactctgaatcaaaacatttggccgccattattggtg gcaaaacaAATGCGTTCCCCAATGTTTTCCAAGCAAGGACCCccggaaaa aataagaaaagattaaTACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNATACAAAATAGGTTAGCGGGACAATttttttgccaccaataatg gcggcAAAGTTGTTACGTCACATCTATTGTTTAGGcgcaaagattacatc atgaatttgcaacaacaaggatgagagtttacctgaatcaagtttgcaag acaattaattaaaacttgaaagtttgaaacaaaataaaacgtgcagcagc caaaatcaaccaaccaaaatttgtcattcaaatCTCGAAACAGTGCTTCG ATTCTTAAGGCCTTGTTtgtacgctaaagtaaaaacaattccgaacatgt aaatgggtcagtgtttgaggtccggcaaaatttccaggaaatagcctatc tggcatagcgcggatctaggtgggttccgtctccccgtagatcttttttt tgggaagttgatcttcaaattagttctcaaggttagcttggctcaaattt tttaatctatggctcaaattttaggcaatttctcatagtttttaaaaata ttaatttcattaaaaagcaccgggttattttttcatgaattcctttagaa gttttgcggcacatttttttgcttgaaaatcaGGTAGACAacatagcgct ttcgcagcattaatctttgatatgcattttggcgggacgctagtgtgact aactgctagggacaagataatttatcttgTTTGTACTGGCCGAGGGAAAG TGATGTATACTGGAATAATTTGTTATGCAAAAGACTGTTGTGTTCTCCTA ACATATTTTGTAAACAATATATTATCCTGTGGCTTTATGTCAAATTCTGT ATTGTCTTTCCTAGAAATTACACATAGGAATAGTATTATCTCAtcatatc tttatttttcagaaagCAGTAAAAGGTGGAGCTGTTGATAGACTAACAGA TACAAGCAAATACACTGGAAGTCACAAAGAACGCTTCGATGAATCAGGAA AGGGCAAAGGCCTTGATGGGCGTAGAGAGATGGATAAGAAAGCATCTGAG GGATATGTTGGCGGTTATCAAGGAATGGATACCTATGATAAATCTCACTG ATTAAATGTAAAAGGAATGTAATATTCGTTTAGCAATGAACTAGCTCTTT AGTTCTGCTTTTGAAGTagtcaaaattgtatttttttagatGCATTTTTT TATCAGTTTTGGAGGTTATTCCCGAGGTGGTACTACCCTTGCCACTCACA GGGGTGTGCTGCTGAAGTTTGAAAAATAGGaaccttttttttaaagtggc cctgaatgggactgaaacttgcaaatgttctcaaaattttctacttttct ccCAAAATCCCCCAAAAAGATATCCTAcaagggactgatttttctatttt ggtgtttttgcgaccccaTCTGGGACTGATGGACTGttggtgaaaaaagg taccctgaccagtggAACATTCCCGTACCCTATTATTGATATCTTTCCTT TTTACAAGCTTCCCTTCTCTCTCTTTTAAATGTAGATTTtcctcatttca atttttttatgcaaTAAAAGCCCCAAACAAATCGTTTCTTTATTACTATA TATTTCTTGTTTGATTTTTAAACACAAAGAATGAATAAATAGCTTTGGAA TCCATTTTTGACATTTAAAAGATTTCAGAATTATCTATTTTTATGAAATC TAAGCTATCATCTGGCTTACAATACTAATATGTTGTTTCTATTGACTTTC TTTATCAATGATTAATGACAGTTTAGCTTTACTATGAATGATAAAAATCG TTTTATAATCTCTTCTCTTCGCTTTATTTATTCAGGGTCAGATTAGACCA TATCTATTTGAAATAAAGACCTCCTCCACAGAGGCTCACTTCATGCTTGA CATTCTAGCCCGGGTTAAAAAAATGCCGTCTATAATTCTAACATTCCAAT ACTATTTTTTATTCTTACTTAATTTAGATATTACTAACTCTTTTAAAGTG TGGATTTCtgttttttatctgaaaaatgttttaatataTTATTGTACACT TATTGatggaatataattttagaatatttttgggTGTAATGTTCTCAGTC ACTTGTAATTTTCATCATTAGATTTAGTTTTTATCACTAATTTTTATGca gaataaaaaagatttttgcatcaaatttcatcgaatattttcCTAATCAA GTACTGTCAAAGGTCTGGACAAAGTTCAAACGTTCATAATAGATATATCa caccatagtcattataaaaaaacactggtctggcaatgtattgttttagc tttattatcgaattttcttttgttataaataaaaggcaagttgcgatttg catactttttgatcacgttaccaaattctccttttgggattggtctaaat ttcaatcacatgatcaaaaagtatgcaaaataaatcgatttgcGAACACA AGCTCTAACtgttaacaatagaaagaaacaatagccttccagaccggggt tttttataatgactatgatcaCACTAATTACTACTGCTAATTACATATCA ATTACTTAGTAAGAAATGCATTACATTTGGTTACACTAAAAGGAATTCTA ACAACTTAgataattattttgataatagtttttatttgtttgttgaAATG CAGAACCTCTCTGTAagggggttggtctaaaaagcagggtagccaatggg gtcgccaattgggctaggttatggggtacctctttttgcctaaacttttg aaatctgaaacctgtttaatgtggaaataactattacaacatcttgttaa tgattccatgtgataacatttaagattcctttcgaacttcagtcacaata gccttttttccaaaggtactgaactttgttacttctcaagagacctggcg ccgtTTTGTCctccttcttggcttcgtttgaaaatttacagacccgaata aataatatatacaaaacagtttttaatattttagatttagattttattta tgtttttaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNtcaatcagattcatgctccctggtca gtaaaatgtggttctatgcatccattttcggtatttctattctggtctgt aaaatatttaggtaccccacaacccattggctaccccaattggctaccct gctttttagaccaaccctctGTGAGGTTCTATGGAAATTATTTAAGATTC TCGTAAAACAATAAAACTCTttaggatttttgaaaattatgaaaattatg aaaattccaaaatattgatttttttcagtaaacGAACAAGAAAAATTCGA TATGAACAGTTCATGTTGGCATTGCAATACATGGCAAGCAGGAAATATCC AGGTGATGAAGAAGGGTTCCAGAAACTCCAGCAAGTCATTTTGAAAGGTT GTGGACCAAAAGAAGTCAAAACCACTGTAGGGATATGATTTTTATGTTAT TTCTAAACTGTGGGTAAAATAACGATTCATAATACCATAGACATATGAAC TGTTCATATGTCTATGAATGATAATACTTTACTTTGGGAGCCATAAGTCA AATGAGTGGGGATAATTGGAACATTGataaaaacttcaaattttatttaa aaatgtacggaaaattaaaaatattcattttaaaatcaaaaatatattca atgaAGTAGTTTTTTTAAGCCATTGGTATCGTTTTCATAGACAAAACTTC AATCATGTTGTATGAATAAGAAAAATAGGCATCTCAGGAAGATCTTCGGT GTAGCATGGAGACCAtataatgaatttttattttttcatcttagAAATCA ACCAACAAAGATGTCGTTGGCCGATTAACTGATACCACAAAATACACTGG ATCTCATCGCGAACGTTTTGACGAAGATGGAACAGGTAAAGGATTGGGTG GACGGTACGCCACTGACGCCACAACTCAAAACGCACTGTCTGGTTATGTT GGGGCGTATAAAGGAAAAGATACATATGATGAGGTGCATTgattgaatat ttttcaagttacgTTTTTCACTTGTTGCGCTGATTAATAGATTAGATTTG CGAGACGTTtatagaattatttttttcatggtGATTTGGGATCCATAAAA TCATCGTAAAGTTCACATAAAATATACGCTAGGcacaagaaaaacttttt tgattaagAATTATTGGGCTTAAACGTCATGTGAGACATTAACTCCTAGG ATGAGATCAATTGGATCAGGTGTTTGACGGGTCAACCGGTCCTAAAGTTC TAACCCTAAAAAATGAATCAGGAGGTTGGATGGAATTCGTTAGAATAAgc taacagatcatccattctgcgcatacCAAACTCTGCTCTATATAGGGATA TGTAATTAGATTGATCTTATCGAGTTGATTTTGaatgcacgcttttttat aaaaatatactttataagaatatttatgatgaaattagccaaaaaattaa aaatatcctaAGAATATCACTATCATGGATTATTGGCAACGAAACCtgag aatgccatttttagagcacgTTACTGATAAATTGCCAATTGCCAGCAATA CTAAAAAGTTTCACAAAAGTGCCAAATCTTTGCTCAAGGTGTATTACATG CTACATTTTGGCTAGGATTGGAtccaaacctaagaataccgtaagaatat ttcaagatgatttttcctcaaaaagttaagaatatttaagcGTGTAGAAC AAAGGAagctatttttcatttattgggTGAcggtcgaaattattttttac ctatTGTATATAACAAATCCTAATTATTTAttggaaattatttttaaaca gatatattttatcatattttatcaGAGAAAGCGTTTGTATCAttgtcaaa ttaatttttttaattcgttcattcaatatatttcattttcaaaaaaataa acatctttcttctaaaaatattacaatagatttttaaattgaatcGTGCG TATTACGTCCAcaattttccataaattattaaaaatttacaattttgttt ATGGAATAAATTATtactacaaaaaaataaagcataaaataaataattag CCGTCAGTAAAACAACTtgtttttaattgaaaaagtaaatttttcgaGCT TCAAATTAAACTGTTTTCGAAATTTCGTtctcaattttatcaaaatattt aggaattttcgacgaaaatattttcgaatcCAAGTTTTCTAGAAATATAC CTATTTTCACAACATATAATTttctatttaaaaatatttttcttcgtcTT CGAGACATTCTTTTTCATGAAGTATGTTTCAAACTACCAAAGTCTGTAAT TATAATAATGTCGTTTGAGTACAAAAAATGTTCAGTTCATATAAAAAAGC GTTCTTTCCAAATGGGTCATTCATTCCCTTCATCGATACAATTTCGATAG ATTCTCGATTAGCTTCGATTGGTCAAGTACCTTTTTCATTCGTCTTTCAT ACGTGTTTCGAACCACTCGTTTGCCGTCACTTTCGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036129XLOC_036129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057336-exon-scaffold_288-1491911889:593052..593370TCONS_00057336-exon-scaffold_288-1491911889:593052..593370Clytia hemisphaericaexon
TCONS_00057336-exon-scaffold_288-1510915933:593052..593370TCONS_00057336-exon-scaffold_288-1510915933:593052..593370Clytia hemisphaericaexon
TCONS_00057336-exon-scaffold_288-1575043694:593052..593370TCONS_00057336-exon-scaffold_288-1575043694:593052..593370Clytia hemisphaericaexon
TCONS_00057336-exon-scaffold_288-1491911889:598880..599027TCONS_00057336-exon-scaffold_288-1491911889:598880..599027Clytia hemisphaericaexon
TCONS_00057336-exon-scaffold_288-1510915933:598880..599027TCONS_00057336-exon-scaffold_288-1510915933:598880..599027Clytia hemisphaericaexon
TCONS_00057336-exon-scaffold_288-1575043694:598880..599027TCONS_00057336-exon-scaffold_288-1575043694:598880..599027Clytia hemisphaericaexon
TCONS_00057336-exon-scaffold_288-1491911889:599396..601090TCONS_00057336-exon-scaffold_288-1491911889:599396..601090Clytia hemisphaericaexon
TCONS_00057336-exon-scaffold_288-1510915933:599396..601090TCONS_00057336-exon-scaffold_288-1510915933:599396..601090Clytia hemisphaericaexon
TCONS_00057336-exon-scaffold_288-1575043694:599396..601090TCONS_00057336-exon-scaffold_288-1575043694:599396..601090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:593052..601090 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.338354 tpm) - - (13.1318 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.558873 0.537381 0.338354 0.396737 1.13383 0.630676 0.839061 1.00129 1.01207 1.19075 0.359801 0.641041 5.40752 6.18394 1.76477 2.31402 1.43403 2.66187 13.1318 9.63155 3.04037 3.30344 1.27679 1.77424 2.86892 4.71608 0.437478 0.507121 1.47559 1.70405
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Expect = 8.11e-23 / Id = 46.46SequenceTPPP3
Match NameE-valueIdentityDescription
TPPP38.109e-2346.46Tubulin polymerization-promoting protein family me... [more]
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