Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057379 ID=TCONS_00057379|Name=TCONS_00057379|organism=Clytia hemisphaerica|type=transcript|length=566bp TCTAGAAAGAATGACTTTCAAATGAATAAATACTCTTTTTTAAATGGCTA CAAAAAACTTAACACGTTTGTATTTCAAATTTCGAGACAATCATAAAACA CAACAACAGAGAGACACACCcaaaaaagatcttttcaaagcaagagcaaa aaatGAAGAATCAATTTCTTTGATCAATGATGAGGATAATGAAGATGATG GGCTTGGAGGATCCAACTTCTCGTCCCTTCCTCCTGAATgGACAACTGCA GTGGAAGAAGTACAATATGATATATccaaaataatgaaaagaaTGAAAGA CTTATCATCATTACACAACAAACATCTGAACAGACCGTCAATGGATGACA ATATGACCGAAGAACACACCATTGATGTCACCACACAAGAAATCACACAG CTGTTTCATCAATGCCAGCGCTGTATACAGTCCATTCAGGGACGATCCAT GGGCTGCCAAAAAGCAGAACGACAAATCATCAAAAACGTCGTGTCATCTC TAGCTTCACAACTTCAAGATCTATCTTTTAACTTCAAAAAGGACCAATCT AAATATCTAAAACGTG Run BLAST on NCBI protein sequence of TCONS_00057379-protein >TCONS_00057379-protein ID=TCONS_00057379-protein|Name=TCONS_00057379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MATKNLTRLYFKFRDNHKTQQQRDTPKKDLFKARAKNEESISLINDEDNE DDGLGGSNFSSLPPEWTTAVEEVQYDISKIMKRMKDLSSLHNKHLNRPSM DDNMTEEHTIDVTTQEITQLFHQCQRCIQSIQGRSMGCQKAERQIIKNVV SSLASQLQDLSFNFKKDQSKYLKR Run BLAST on NCBI transcript from alignment at scaffold_288:505296..510348- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057379 ID=TCONS_00057379|Name=TCONS_00057379|organism=Clytia hemisphaerica|type=transcript|length=5053bp|location=Sequence derived from alignment at scaffold_288:505296..510348- (Clytia hemisphaerica) TCTAGAAAGAATGACTTTCAAATGAATAAATACTCTTTTTTAAATGGCTA
CAAAAAACTTAACACGTTTGTATTTCAAATTTCGAGACAATCATAAAACA
CAACAACAGAGAGACACACCCAAAAAAGATCTTTTCAAAGCAAGAGCAAA
AAATGTAAGTCTTTTTATCTTTTCTTGGCTATTCAAAGTAATTCCTGAAA
TCCTCATCTGTAGATGGAATTTTGTACTGTTTGGATTTGAAACTAGGGTT
TCTGTACTGGTTAATTCAGCCCAGATTTCTGTGCAATTTTGAGTTAGATT
TTTTGTAAGAAAGTTACTGTATGGAACAAAGGAAAATAGTCAAAGATCAA
AGAAATTTACCTTTACCTTCAATTGCAATTGATAGCAAGTACAGGGGCTT
TCAAAGTTTGTAAATTTGAATGGGGGCTTTCGTGAGCTAAATCTAAGAAA
ACATTTGCGGCATCACGATGGAGCGCNCTTTCTTGAGCTAAATCTAAGAA
AACATTTGCGGCATCACGATGGAGCGCATGACATCAACCATGCAGCAAAC
TACAGGCTTGTAATTTGTTCATTATATTGGGGTGGTGAGCACTTTGGCGA
TAGGCGCTCTCTAATTTGCCAATCGGCATCAGCCATTTTGAAGGAGAACA
AAAAATTCATTTGTCATGGTCTCTGCCACAGAAATGTTGGCTCATTTGTG
TTGTTAATGCTGAGTTTATGGACACAAAAATACGACCGTGCAGGACCGTG
TGCATTAGCAATTAGCTTAAAAATAAAAGTAAAAAATCCTGTTGTGTGTA
ATTCTGGACACCTCCTCCATATTCATAGTCAATTGTAACACTAACAAGGA
ATACAAATTGAATTAATTGAACTGTTCGGTTCAGAGACTGGATTTTCAAT
AAATTGTGAAATCCTCAAACTTTTGTTTGTAAATGTATCCAAAGATAAAA
TCTGATACTCTTACAGACAAAGTTTTGAAATAGTAAGTGTGATGATGATC
AATAGCCCTTTATTTATCCATAACATATTTTTCATAGGAAGAATCAATTT
CTTTGATCAATGATGAGGATAATGAAGATGATGGGCTTGGAGGATCCAAC
TTCTCGTCCCTTCCTCCTGAATGGTATGTTGTTGTTTTTTACCTAGAAAG
CTGTTTTTGTCATCATTTATTGTCAAAGTTTTACTACAATCATAGCTGAC
ATAACAAGATCTCACTTCAATAACTAAAAATCTTATCTGAACACTATAGT
AGGAGCCAGGTATATTCTATCCATTATTTATGAAAGTCAGTTATGGTTGG
TTTTAATTATAGGACAACTGCAGTGGAAGAAGTACAATATGATATATCCA
AAATAATGAAAAGAAGTAAGTACTCATGGATACCTACATTTGGGATCAGA
ACTTTACTATTTTCAGGCAGGGGGTCGATATAAGATAAAAAAAATTAAGA
AAATTAAGTAGCCTTTATATATAAGTTAGAGTGGATAATCAGATGGAAGT
TGACTGGGCTTCAATGGTATTTGCTGATCGAAAAACGATATAGAGGACAC
TTTAGCGGACATATTGATTTCCCAACGTAACTCTAGGAAATCAACTGGAA
ATGATGACGTCGAGAAGTAGCTTTGACATTGATTTTCTAAAGATAGGTTG
AGAAATTTACTATAGCCACTTAAAAGTCCTGTACATCGTTTTTCGACTGC
TTTCTATTGGTATAAGTGGTGTTAGGTTTTTTTTTACTTTGAAATGTTGT
CAAATTTTGTGGGTTGAGGTGTTTGCATGTGACGCAAATTCTGAGCTCTA
AGTTTCCTAGGCCTTAGCAGAAAAGTTGCGAAAGAGTCTTTAAATATTTT
ATTCTTTGAAATGAACCAGGTTTGGTTGCGTCGCATAAAAGATGTCACAG
GTCCTCAGGGTTTTCCCCTTACTACTAAGTATTGGAATCTATTTTCCACG
TAGAGTTTTATGCAATGACTCTCTTCTCTTCCTCGAAATATATTATAGAA
TGTTTTCAAATTGACAATTTGTTATGAGGATCAAAATGCCTCTGATCATC
CTTTTCCTTTTCTTTGCAACTTATAGAAATTATCCTTACCCTTTGCTTTG
CTTTTAACCCCAGTGAAAGACTTATCATCATTACACAACAAACATCTGAA
CAGACCGTCAATGGATGACAATATGACCGAAGAACACACCATTGATGTCA
CCACACAAGAAATCACACAGGTACAGAAAGTAATTCCCAATCAATTGGTT
TAAATATTGAAAATTATCGATATTTTTTGCTGAGTCAGCAGTTTTTAAGC
ATATTTACCCACCTTAAAAATGAAATATCTCAAGATCGGAACATCGAAAG
TTAACAAACCATACCATTTTCGGATATTACTAATTCAGGGCTATCCAGCT
GTGGGAATGATTTTTTCTGAAAATGCTCCCAGAAAAATGCTGACGTCATC
GGAAAACGCCAAAAACGTCGATTTNNNNNNNNNNNNNNNNNNNNNNNNNN
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CGTATGTTTCATTTCCTGTACCCAATATCCCAATCTCCTTCAAAATCACT
TCAATATAAAAACGTTTACAAATAAATGCAACGTTATTAGCATCTTTATC
AATGGGAACAATAACAAAATTTGTGTGAAGTTCATTTAAATAGTCAATGA
CATCTTTTCTCTTGAAGATATATATAGTACTTATATATAGTACTGTACTT
CAACTTTTTCCTACAACACAAAACGTTTTTGAAAATGAACGATGCTTGAT
GTTTCTTTTTGTAGCTGTTTCATCAATGCCAGCGCTGTATACAGTCCATT
CAGGGACGATCCATGGGCTGCCAAAAAGCAGAACNACAACACAAAACGTT
TTTGAAAATGAACGATGCTTGATGTTTCTTTTTGTAGCTGTTTCATCAAT
GCCAGCGCTGTATACAGTCCATTCAGGGACGATCCATGGGCTGCCAAAAA
GCAGAACGACAAATCATCAAAAACGTCGTGTCATCTCTAGCTTCACAACT
TCAAGATCTATCTTTTAACTTCAAAAAGGACCAATCTAAATATCTAAAAC
GTG Coding sequence (CDS) from alignment at scaffold_288:505296..510348- >TCONS_00057379 ID=TCONS_00057379|Name=TCONS_00057379|organism=Clytia hemisphaerica|type=CDS|length=2610bp|location=Sequence derived from alignment at scaffold_288:505296..510348- (Clytia hemisphaerica) CTGTTTCATCAATGCCAGCGCTGTATACAGTCCATTCAGGGACGATCCAT GGGCTGCCAAAAAGCAGAACGACAAATCATCAAAAACGTCGTGTCATCTC TAGCTTCACAACTTCAAGATCTATCTTTTAACTTCAAAAAGGACCAATCT AAATATCTAAAACGTTGAAAGACTTATCATCATTACACAACAAACATCTG AACAGACCGTCAATGGATGACAATATGACCGAAGAACACACCATTGATGT CACCACACAAGAAATCACACAGGACAACTGCAGTGGAAGAAGTACAATAT GATATATCCAAAATAATGAAAAGAAGAAGAATCAATTTCTTTGATCAATG ATGAGGATAATGAAGATGATGGGCTTGGAGGATCCAACTTCTCGTCCCTT CCTCCTGAATGATGGCTACAAAAAACTTAACACGTTTGTATTTCAAATTT CGAGACAATCATAAAACACAACAACAGAGAGACACACCCAAAAAAGATCT TTTCAAAGCAAGAGCAAAAAATCTGTTTCATCAATGCCAGCGCTGTATAC AGTCCATTCAGGGACGATCCATGGGCTGCCAAAAAGCAGAACGACAAATC ATCAAAAACGTCGTGTCATCTCTAGCTTCACAACTTCAAGATCTATCTTT TAACTTCAAAAAGGACCAATCTAAATATCTAAAACGTTGAAAGACTTATC ATCATTACACAACAAACATCTGAACAGACCGTCAATGGATGACAATATGA CCGAAGAACACACCATTGATGTCACCACACAAGAAATCACACAGGACAAC TGCAGTGGAAGAAGTACAATATGATATATCCAAAATAATGAAAAGAAGAA GAATCAATTTCTTTGATCAATGATGAGGATAATGAAGATGATGGGCTTGG AGGATCCAACTTCTCGTCCCTTCCTCCTGAATGATGGCTACAAAAAACTT AACACGTTTGTATTTCAAATTTCGAGACAATCATAAAACACAACAACAGA GAGACACACCCAAAAAAGATCTTTTCAAAGCAAGAGCAAAAAATCTGTTT CATCAATGCCAGCGCTGTATACAGTCCATTCAGGGACGATCCATGGGCTG CCAAAAAGCAGAACGACAAATCATCAAAAACGTCGTGTCATCTCTAGCTT CACAACTTCAAGATCTATCTTTTAACTTCAAAAAGGACCAATCTAAATAT CTAAAACGTTGAAAGACTTATCATCATTACACAACAAACATCTGAACAGA CCGTCAATGGATGACAATATGACCGAAGAACACACCATTGATGTCACCAC ACAAGAAATCACACAGGACAACTGCAGTGGAAGAAGTACAATATGATATA TCCAAAATAATGAAAAGAAGAAGAATCAATTTCTTTGATCAATGATGAGG ATAATGAAGATGATGGGCTTGGAGGATCCAACTTCTCGTCCCTTCCTCCT GAATGATGGCTACAAAAAACTTAACACGTTTGTATTTCAAATTTCGAGAC AATCATAAAACACAACAACAGAGAGACACACCCAAAAAAGATCTTTTCAA AGCAAGAGCAAAAAATCTGTTTCATCAATGCCAGCGCTGTATACAGTCCA TTCAGGGACGATCCATGGGCTGCCAAAAAGCAGAACGACAAATCATCAAA AACGTCGTGTCATCTCTAGCTTCACAACTTCAAGATCTATCTTTTAACTT CAAAAAGGACCAATCTAAATATCTAAAACGTTGAAAGACTTATCATCATT ACACAACAAACATCTGAACAGACCGTCAATGGATGACAATATGACCGAAG AACACACCATTGATGTCACCACACAAGAAATCACACAGGACAACTGCAGT GGAAGAAGTACAATATGATATATCCAAAATAATGAAAAGAAGAAGAATCA ATTTCTTTGATCAATGATGAGGATAATGAAGATGATGGGCTTGGAGGATC CAACTTCTCGTCCCTTCCTCCTGAATGATGGCTACAAAAAACTTAACACG TTTGTATTTCAAATTTCGAGACAATCATAAAACACAACAACAGAGAGACA CACCCAAAAAAGATCTTTTCAAAGCAAGAGCAAAAAATCTGTTTCATCAA TGCCAGCGCTGTATACAGTCCATTCAGGGACGATCCATGGGCTGCCAAAA AGCAGAACGACAAATCATCAAAAACGTCGTGTCATCTCTAGCTTCACAAC TTCAAGATCTATCTTTTAACTTCAAAAAGGACCAATCTAAATATCTAAAA CGTTGAAAGACTTATCATCATTACACAACAAACATCTGAACAGACCGTCA ATGGATGACAATATGACCGAAGAACACACCATTGATGTCACCACACAAGA AATCACACAGGACAACTGCAGTGGAAGAAGTACAATATGATATATCCAAA ATAATGAAAAGAAGAAGAATCAATTTCTTTGATCAATGATGAGGATAATG AAGATGATGGGCTTGGAGGATCCAACTTCTCGTCCCTTCCTCCTGAATGA TGGCTACAAAAAACTTAACACGTTTGTATTTCAAATTTCGAGACAATCAT AAAACACAACAACAGAGAGACACACCCAAAAAAGATCTTTTCAAAGCAAG AGCAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057379-exon-scaffold_288-1575043694:510195..510348 | TCONS_00057379-exon-scaffold_288-1575043694:510195..510348 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1575043694:509226..509311 | TCONS_00057379-exon-scaffold_288-1575043694:509226..509311 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1575043694:508984..509036 | TCONS_00057379-exon-scaffold_288-1575043694:508984..509036 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1575043694:508129..508235 | TCONS_00057379-exon-scaffold_288-1575043694:508129..508235 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1575043694:505296..505461 | TCONS_00057379-exon-scaffold_288-1575043694:505296..505461 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1510915933:510195..510348 | TCONS_00057379-exon-scaffold_288-1510915933:510195..510348 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1510915933:509226..509311 | TCONS_00057379-exon-scaffold_288-1510915933:509226..509311 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1510915933:508984..509036 | TCONS_00057379-exon-scaffold_288-1510915933:508984..509036 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1510915933:508129..508235 | TCONS_00057379-exon-scaffold_288-1510915933:508129..508235 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1510915933:505296..505461 | TCONS_00057379-exon-scaffold_288-1510915933:505296..505461 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1491911889:510195..510348 | TCONS_00057379-exon-scaffold_288-1491911889:510195..510348 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1491911889:509226..509311 | TCONS_00057379-exon-scaffold_288-1491911889:509226..509311 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1491911889:508984..509036 | TCONS_00057379-exon-scaffold_288-1491911889:508984..509036 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1491911889:508129..508235 | TCONS_00057379-exon-scaffold_288-1491911889:508129..508235 | Clytia hemisphaerica | exon |
TCONS_00057379-exon-scaffold_288-1491911889:505296..505461 | TCONS_00057379-exon-scaffold_288-1491911889:505296..505461 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_288 | supercontig | scaffold_288:505296..510348 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR010989 | SNARE |
Vocabulary: Biological Process
Term | Definition |
GO:0016192 | vesicle-mediated transport |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0016192 |
vesicle-mediated transport |
cellular_component |
GO:0016020 |
membrane |
Blast
BLAST of TCONS_00057379 vs. Swiss-Prot (Human)
Match: STX16 (Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3) HSP 1 Score: 146.747 bits (369), Expect = 3.059e-42 Identity = 61/112 (54.46%), Postives = 89/112 (79.46%), Query Frame = 2 Query: 230 PPEWTTAVEEVQYDISKIMKRMKDLSSLHNKHLNRPSMDDNMTEEHTIDVTTQEITQLFHQCQRCIQSIQGRSMGCQKAERQIIKNVVSSLASQLQDLSFNFKKDQSKYLKR 565
PP+W V+E+QYD+ +I ++MK+L+SLH+KHLNRP++DD+ EEH I++TTQEITQLFH+CQR +Q++ R+ C + E +++ NVV+SLA LQ+LS +F+ QS YLKR
Sbjct: 75 PPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKR 186
The following BLAST results are available for this feature:
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